Wall clock time and date at job start Tue Mar 31 2020 11:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38360 * 119.45714 * 2 1 4 4 C 1.38352 * 119.30155 * 179.97438 * 3 2 1 5 5 C 1.40016 * 118.29017 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.56182 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00338 * 175.19401 * 6 5 4 8 8 N 1.34782 * 119.99292 * 355.19251 * 6 5 4 9 9 C 1.46506 * 119.99334 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.52658 * 34.91594 * 9 8 6 11 11 C 1.53042 * 109.49603 * 154.99956 * 9 8 6 12 12 C 1.53045 * 109.53708 * 181.31268 * 11 9 8 13 13 C 1.53190 * 109.31349 * 298.63410 * 12 11 9 14 14 H 1.09002 * 109.58748 * 294.85244 * 13 12 11 15 15 C 1.52997 * 109.58730 * 174.56455 * 13 12 11 16 16 N 1.46931 * 108.77679 * 54.63475 * 13 12 11 17 17 C 1.36936 * 120.62896 * 126.36731 * 16 13 12 18 18 H 1.08001 * 120.00224 * 321.23872 * 17 16 13 19 19 C 1.38813 * 119.99708 * 141.24571 * 17 16 13 20 20 N 1.31620 * 119.99908 * 346.29452 * 19 17 16 21 21 Si 1.86795 * 119.99846 * 166.29374 * 19 17 16 22 22 H 1.48501 * 109.47573 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47295 * 119.99933 * 21 19 17 24 24 H 1.48507 * 109.47262 * 239.99731 * 21 19 17 25 25 C 1.46927 * 118.73551 * 306.39527 * 16 13 12 26 26 C 1.39519 * 118.88177 * 0.26865 * 5 4 3 27 27 C 1.50708 * 119.71788 * 179.72704 * 26 5 4 28 28 N 1.31693 * 120.56392 * 359.46100 * 26 5 4 29 29 H 1.09005 * 109.46942 * 90.00472 * 1 2 3 30 30 H 1.09001 * 109.47301 * 209.99652 * 1 2 3 31 31 H 1.09001 * 109.47771 * 330.00517 * 1 2 3 32 32 H 1.08002 * 120.34731 * 0.02562 * 3 2 1 33 33 H 1.08005 * 120.85223 * 180.02562 * 4 3 2 34 34 H 0.96991 * 120.00499 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.45941 * 61.29234 * 11 9 8 36 36 H 1.09005 * 109.46045 * 301.33391 * 11 9 8 37 37 H 1.08993 * 109.49465 * 178.68415 * 12 11 9 38 38 H 1.08994 * 109.49629 * 58.58539 * 12 11 9 39 39 H 1.09002 * 109.46883 * 60.28425 * 15 13 12 40 40 H 1.09003 * 109.47258 * 180.28271 * 15 13 12 41 41 H 1.09000 * 109.46914 * 300.28308 * 15 13 12 42 42 H 0.97000 * 119.99691 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.58563 * 293.80992 * 25 16 13 44 44 H 1.09008 * 109.70170 * 173.46554 * 25 16 13 45 45 H 1.09000 * 109.46751 * 83.39833 * 27 26 5 46 46 H 1.09000 * 109.47023 * 203.40131 * 27 26 5 47 47 H 1.09008 * 109.46853 * 323.39785 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2010 0.0005 5 6 4.2311 -0.0338 0.0005 6 6 5.7083 -0.0964 0.0016 7 8 6.2710 -1.1701 0.0898 8 7 6.4308 1.0373 -0.0951 9 6 7.8945 0.9752 -0.0946 10 1 8.2210 0.0723 -0.6104 11 6 8.4582 2.2048 -0.8106 12 6 9.9862 2.1246 -0.8394 13 6 10.5201 2.1143 0.5965 14 1 10.2921 3.0653 1.0779 15 6 12.0346 1.8982 0.5790 16 7 9.8723 1.0211 1.3341 17 6 10.6220 0.0843 1.9940 18 1 11.5381 -0.2816 1.5543 19 6 10.2045 -0.3951 3.2279 20 7 9.2519 0.2285 3.8882 21 14 10.9946 -1.9254 3.9513 22 1 12.0317 -2.4351 3.0187 23 1 11.6223 -1.5895 5.2545 24 1 9.9576 -2.9685 4.1557 25 6 8.4047 0.9519 1.3497 26 6 3.4716 -1.2041 -0.0058 27 6 4.1628 -2.5433 -0.0121 28 7 2.1559 -1.1485 -0.0009 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3635 0.8900 0.5137 32 1 1.6442 2.1382 0.0004 33 1 4.1273 2.1267 0.0010 34 1 5.9817 1.8942 -0.1651 35 1 8.1517 3.1062 -0.2801 36 1 8.0769 2.2371 -1.8314 37 1 10.3859 2.9887 -1.3699 38 1 10.2931 1.2108 -1.3481 39 1 12.5107 2.7077 0.0257 40 1 12.4118 1.8862 1.6016 41 1 12.2604 0.9469 0.0973 42 1 8.9599 -0.1067 4.7503 43 1 8.0043 1.8081 1.8927 44 1 8.0854 0.0297 1.8352 45 1 4.4339 -2.8170 1.0075 46 1 3.4916 -3.2966 -0.4245 47 1 5.0630 -2.4846 -0.6242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072096188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:27 Heat of formation + Delta-G solvation = 10.139931 kcal Electronic energy + Delta-G solvation = -27151.130468 eV Core-core repulsion = 23526.943200 eV Total energy + Delta-G solvation = -3624.187269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.78030 -39.11430 -37.55725 -34.66255 -33.54725 -33.12673 -32.64945 -30.57709 -29.93207 -29.08188 -27.40159 -25.83966 -24.85262 -23.04117 -22.35209 -22.18538 -20.85933 -20.11628 -19.32282 -17.56613 -16.79551 -16.32518 -15.49962 -15.35997 -15.27537 -14.99371 -14.46122 -14.16705 -13.83439 -13.80423 -13.39497 -13.37893 -13.31458 -13.07071 -12.72624 -12.45030 -12.41565 -12.26966 -11.96693 -11.92426 -11.75715 -11.40586 -11.09996 -10.89994 -10.75130 -10.55518 -10.41104 -10.24457 -9.97242 -9.93424 -9.84974 -9.73698 -9.43683 -9.19750 -8.93294 -8.52362 -8.41656 -6.47904 -5.75151 -3.29441 0.63248 1.10174 3.04280 3.38121 3.42941 3.49526 3.50942 3.80948 4.07251 4.47839 4.52846 4.62888 4.73199 4.91185 5.20037 5.29185 5.32919 5.33902 5.36220 5.46466 5.50223 5.55905 5.65207 5.67938 5.78020 5.86665 5.93185 5.96998 6.09131 6.11990 6.26941 6.29391 6.31646 6.41182 6.46325 6.49215 6.63322 6.63850 6.73494 6.91187 7.07942 7.16728 7.27057 7.62245 7.79409 7.88390 7.90719 8.53189 8.57431 9.25042 9.86296 10.48228 11.31898 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003737 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.553080 B = 7491.821267 C = 8654.652498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.148 3.852 3 C -0.191 4.191 4 C -0.037 4.037 5 C -0.189 4.189 6 C 0.558 3.442 7 O -0.520 6.520 8 N -0.715 5.715 9 C 0.117 3.883 10 H 0.085 0.915 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.024 0.976 15 C -0.134 4.134 16 N -0.580 5.580 17 C -0.258 4.258 18 H 0.064 0.936 19 C 0.016 3.984 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.174 3.826 26 C 0.195 3.805 27 C -0.111 4.111 28 N -0.493 5.493 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.390 0.610 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.019 0.981 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 5.250 -10.415 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.010 3.990 3 C -0.211 4.211 4 C -0.063 4.063 5 C -0.195 4.195 6 C 0.344 3.656 7 O -0.397 6.397 8 N -0.365 5.365 9 C 0.012 3.988 10 H 0.103 0.897 11 C -0.154 4.154 12 C -0.166 4.166 13 C 0.059 3.941 14 H 0.042 0.958 15 C -0.191 4.191 16 N -0.304 5.304 17 C -0.388 4.388 18 H 0.082 0.918 19 C -0.184 4.184 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.200 1.200 23 H -0.217 1.217 24 H -0.214 1.214 25 C 0.047 3.953 26 C 0.056 3.944 27 C -0.168 4.168 28 N -0.203 5.203 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.224 0.776 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.539 3.662 -10.170 17.324 hybrid contribution 0.430 0.671 0.560 0.974 sum -13.108 4.333 -9.610 16.822 Atomic orbital electron populations 1.20762 0.88658 1.03676 1.03196 1.21491 0.97154 0.88365 0.91990 1.21838 0.94506 0.99388 1.05335 1.21754 0.94624 0.97347 0.92556 1.20908 0.95075 0.94750 1.08727 1.17914 0.85840 0.84658 0.77209 1.90764 1.72030 1.28025 1.48864 1.46022 1.08095 1.08144 1.74268 1.22037 0.76521 0.98700 1.01528 0.89730 1.21677 0.97102 0.97644 0.98982 1.22049 0.93949 1.00901 0.99691 1.20511 0.92188 0.91612 0.89831 0.95823 1.21763 0.95700 0.99841 1.01840 1.43913 1.00419 1.27191 1.58851 1.19020 1.06648 1.15392 0.97727 0.91834 1.25310 0.98472 0.98986 0.95643 1.70012 1.31240 1.38658 1.13770 0.86316 0.78905 0.83334 0.78755 1.20037 1.21687 1.21429 1.20954 0.83918 1.01133 0.89306 1.21534 0.88371 0.95622 0.88851 1.21090 1.00581 0.90495 1.04620 1.67482 1.09162 1.29036 1.14664 0.90174 0.90271 0.90518 0.84380 0.84410 0.77612 0.92286 0.93066 0.92685 0.92063 0.94485 0.91938 0.92899 0.93756 0.96306 0.90399 0.89680 0.91547 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.16 36.00 0.37 -0.44 16 2 C 0.15 1.68 6.78 -82.51 -0.56 1.12 16 3 C -0.19 -1.92 9.72 -39.49 -0.38 -2.31 16 4 C -0.04 -0.42 9.64 -38.87 -0.37 -0.79 16 5 C -0.19 -2.81 5.89 -104.82 -0.62 -3.43 16 6 C 0.56 9.75 7.69 -12.33 -0.09 9.65 16 7 O -0.52 -10.91 13.01 5.32 0.07 -10.84 16 8 N -0.71 -11.39 5.03 -54.63 -0.28 -11.66 16 9 C 0.12 2.21 2.60 -67.81 -0.18 2.03 16 10 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 11 C -0.12 -1.82 5.35 -26.69 -0.14 -1.96 16 12 C -0.13 -2.11 5.37 -26.61 -0.14 -2.25 16 13 C 0.16 3.37 3.49 -67.60 -0.24 3.13 16 14 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 15 C -0.13 -2.53 8.05 37.16 0.30 -2.23 16 16 N -0.58 -14.33 2.93 -164.77 -0.48 -14.81 16 17 C -0.26 -7.04 8.27 -15.06 -0.12 -7.16 16 18 H 0.06 1.71 6.55 -52.49 -0.34 1.37 16 19 C 0.02 0.46 4.94 -17.43 -0.09 0.38 16 20 N -0.89 -26.45 11.83 55.49 0.66 -25.79 16 21 Si 0.90 22.25 29.57 -169.99 -5.03 17.22 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 25 C 0.17 4.14 4.83 -3.71 -0.02 4.12 16 26 C 0.19 2.96 6.82 -82.17 -0.56 2.40 16 27 C -0.11 -1.66 8.89 36.01 0.32 -1.34 16 28 N -0.49 -6.97 10.17 -5.42 -0.06 -7.03 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.14 1.20 6.55 -52.48 -0.34 0.86 16 34 H 0.39 4.85 6.73 -40.82 -0.27 4.58 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 1.29 7.70 -51.93 -0.40 0.89 16 41 H 0.05 1.01 7.40 -51.93 -0.38 0.63 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 2.19 6.80 -51.92 -0.35 1.84 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.11 1.72 5.82 -51.92 -0.30 1.42 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -32.73 371.51 -9.47 -42.20 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.42 Total: 4.19 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -2.53 Total: 0.93 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.16 Total: -59.29 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.73 -9.47 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072096188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.338 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds