Wall clock time and date at job start Tue Mar 31 2020 11:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38360 * 119.45714 * 2 1 4 4 C 1.38352 * 119.30155 * 179.97438 * 3 2 1 5 5 C 1.40016 * 118.29017 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.56182 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00338 * 175.19401 * 6 5 4 8 8 N 1.34782 * 119.99292 * 355.19251 * 6 5 4 9 9 C 1.46506 * 119.99334 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.52658 * 34.91594 * 9 8 6 11 11 C 1.53042 * 109.49603 * 154.99956 * 9 8 6 12 12 C 1.53045 * 109.53708 * 181.31268 * 11 9 8 13 13 C 1.53190 * 109.31349 * 298.63410 * 12 11 9 14 14 H 1.09002 * 109.58748 * 294.85244 * 13 12 11 15 15 C 1.52997 * 109.58730 * 174.56455 * 13 12 11 16 16 N 1.46931 * 108.77679 * 54.63475 * 13 12 11 17 17 C 1.36936 * 120.62896 * 126.36731 * 16 13 12 18 18 H 1.08001 * 120.00224 * 321.23872 * 17 16 13 19 19 C 1.38813 * 119.99708 * 141.24571 * 17 16 13 20 20 N 1.31620 * 119.99908 * 346.29452 * 19 17 16 21 21 Si 1.86795 * 119.99846 * 166.29374 * 19 17 16 22 22 H 1.48501 * 109.47573 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47295 * 119.99933 * 21 19 17 24 24 H 1.48507 * 109.47262 * 239.99731 * 21 19 17 25 25 C 1.46927 * 118.73551 * 306.39527 * 16 13 12 26 26 C 1.39519 * 118.88177 * 0.26865 * 5 4 3 27 27 C 1.50708 * 119.71788 * 179.72704 * 26 5 4 28 28 N 1.31693 * 120.56392 * 359.46100 * 26 5 4 29 29 H 1.09005 * 109.46942 * 90.00472 * 1 2 3 30 30 H 1.09001 * 109.47301 * 209.99652 * 1 2 3 31 31 H 1.09001 * 109.47771 * 330.00517 * 1 2 3 32 32 H 1.08002 * 120.34731 * 0.02562 * 3 2 1 33 33 H 1.08005 * 120.85223 * 180.02562 * 4 3 2 34 34 H 0.96991 * 120.00499 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.45941 * 61.29234 * 11 9 8 36 36 H 1.09005 * 109.46045 * 301.33391 * 11 9 8 37 37 H 1.08993 * 109.49465 * 178.68415 * 12 11 9 38 38 H 1.08994 * 109.49629 * 58.58539 * 12 11 9 39 39 H 1.09002 * 109.46883 * 60.28425 * 15 13 12 40 40 H 1.09003 * 109.47258 * 180.28271 * 15 13 12 41 41 H 1.09000 * 109.46914 * 300.28308 * 15 13 12 42 42 H 0.97000 * 119.99691 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.58563 * 293.80992 * 25 16 13 44 44 H 1.09008 * 109.70170 * 173.46554 * 25 16 13 45 45 H 1.09000 * 109.46751 * 83.39833 * 27 26 5 46 46 H 1.09000 * 109.47023 * 203.40131 * 27 26 5 47 47 H 1.09008 * 109.46853 * 323.39785 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2010 0.0005 5 6 4.2311 -0.0338 0.0005 6 6 5.7083 -0.0964 0.0016 7 8 6.2710 -1.1701 0.0898 8 7 6.4308 1.0373 -0.0951 9 6 7.8945 0.9752 -0.0946 10 1 8.2210 0.0723 -0.6104 11 6 8.4582 2.2048 -0.8106 12 6 9.9862 2.1246 -0.8394 13 6 10.5201 2.1143 0.5965 14 1 10.2921 3.0653 1.0779 15 6 12.0346 1.8982 0.5790 16 7 9.8723 1.0211 1.3341 17 6 10.6220 0.0843 1.9940 18 1 11.5381 -0.2816 1.5543 19 6 10.2045 -0.3951 3.2279 20 7 9.2519 0.2285 3.8882 21 14 10.9946 -1.9254 3.9513 22 1 12.0317 -2.4351 3.0187 23 1 11.6223 -1.5895 5.2545 24 1 9.9576 -2.9685 4.1557 25 6 8.4047 0.9519 1.3497 26 6 3.4716 -1.2041 -0.0058 27 6 4.1628 -2.5433 -0.0121 28 7 2.1559 -1.1485 -0.0009 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3635 0.8900 0.5137 32 1 1.6442 2.1382 0.0004 33 1 4.1273 2.1267 0.0010 34 1 5.9817 1.8942 -0.1651 35 1 8.1517 3.1062 -0.2801 36 1 8.0769 2.2371 -1.8314 37 1 10.3859 2.9887 -1.3699 38 1 10.2931 1.2108 -1.3481 39 1 12.5107 2.7077 0.0257 40 1 12.4118 1.8862 1.6016 41 1 12.2604 0.9469 0.0973 42 1 8.9599 -0.1067 4.7503 43 1 8.0043 1.8081 1.8927 44 1 8.0854 0.0297 1.8352 45 1 4.4339 -2.8170 1.0075 46 1 3.4916 -3.2966 -0.4245 47 1 5.0630 -2.4846 -0.6242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072096188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:27 Heat of formation + Delta-G solvation = -11.430952 kcal Electronic energy + Delta-G solvation = -27152.065852 eV Core-core repulsion = 23526.943200 eV Total energy + Delta-G solvation = -3625.122652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88215 -40.44855 -39.12668 -36.18299 -34.71438 -34.53348 -34.00005 -32.04696 -31.78028 -29.99747 -28.53801 -27.56145 -26.53923 -24.19872 -23.83316 -23.33912 -22.23604 -21.56040 -20.95948 -18.78757 -18.33552 -17.85462 -17.08195 -16.65028 -16.40098 -16.24407 -15.92020 -15.72679 -15.30877 -15.26192 -14.95173 -14.60672 -14.38670 -14.28628 -14.12838 -13.98159 -13.49546 -13.31721 -13.10871 -13.03615 -12.90830 -12.86290 -12.75038 -12.72082 -12.57015 -12.38867 -12.12150 -11.95803 -11.65070 -11.40127 -11.13755 -10.96336 -10.90790 -10.58335 -10.44059 -10.16269 -9.78189 -8.51466 -7.86856 -5.44124 -0.38843 0.16991 1.38554 1.42913 1.51258 1.81958 2.08960 2.48100 2.73370 3.15167 3.28630 3.56113 3.67628 3.69066 3.76557 3.95504 4.03025 4.09947 4.25235 4.35624 4.40141 4.54223 4.59830 4.62862 4.67178 4.72328 4.74530 4.80176 4.81981 4.90282 4.95839 5.02603 5.05648 5.08041 5.14432 5.18734 5.24438 5.31007 5.33582 5.43880 5.56061 5.59631 5.65759 5.70923 5.75525 6.44434 6.55082 6.89092 7.15960 7.24727 7.86438 8.41618 9.16145 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003737 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.553080 B = 7491.821267 C = 8654.652498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.141 3.859 3 C -0.177 4.177 4 C -0.032 4.032 5 C -0.212 4.212 6 C 0.553 3.447 7 O -0.567 6.567 8 N -0.702 5.702 9 C 0.133 3.867 10 H 0.056 0.944 11 C -0.107 4.107 12 C -0.118 4.118 13 C 0.154 3.846 14 H 0.020 0.980 15 C -0.127 4.127 16 N -0.600 5.600 17 C -0.254 4.254 18 H 0.065 0.935 19 C -0.041 4.041 20 N -0.929 5.929 21 Si 0.953 3.047 22 H -0.262 1.262 23 H -0.286 1.286 24 H -0.299 1.299 25 C 0.188 3.812 26 C 0.173 3.827 27 C -0.104 4.104 28 N -0.514 5.514 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.184 0.816 33 H 0.168 0.832 34 H 0.411 0.589 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.035 0.965 41 H 0.044 0.956 42 H 0.246 0.754 43 H 0.000 1.000 44 H 0.022 0.978 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.869 8.125 -12.572 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.003 3.997 3 C -0.197 4.197 4 C -0.058 4.058 5 C -0.218 4.218 6 C 0.341 3.659 7 O -0.447 6.447 8 N -0.354 5.354 9 C 0.027 3.973 10 H 0.074 0.926 11 C -0.145 4.145 12 C -0.157 4.157 13 C 0.049 3.951 14 H 0.037 0.963 15 C -0.185 4.185 16 N -0.325 5.325 17 C -0.385 4.385 18 H 0.082 0.918 19 C -0.238 4.238 20 N -0.574 5.574 21 Si 0.781 3.219 22 H -0.186 1.186 23 H -0.213 1.213 24 H -0.227 1.227 25 C 0.061 3.939 26 C 0.035 3.965 27 C -0.161 4.161 28 N -0.225 5.225 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.201 0.799 33 H 0.186 0.814 34 H 0.248 0.752 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.041 0.959 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.951 6.583 -12.364 20.488 hybrid contribution 0.775 -0.159 1.202 1.439 sum -14.177 6.424 -11.161 19.153 Atomic orbital electron populations 1.20900 0.85781 1.04808 1.04550 1.22287 0.99091 0.88131 0.90210 1.22323 0.93879 1.00663 1.02792 1.22122 0.95644 0.96874 0.91131 1.20726 0.93124 0.96407 1.11518 1.18450 0.87243 0.84194 0.76025 1.90744 1.73260 1.29828 1.50914 1.45779 1.06912 1.08942 1.73726 1.21550 0.78192 0.99644 0.97927 0.92598 1.21649 0.96314 0.95909 1.00605 1.21949 0.94580 1.02347 0.96834 1.20813 0.93070 0.89689 0.91558 0.96254 1.21698 0.94886 1.01092 1.00781 1.44207 1.00723 1.28333 1.59228 1.19301 1.06387 1.15422 0.97408 0.91763 1.26000 0.99555 1.01730 0.96489 1.70145 1.33107 1.40196 1.13954 0.85428 0.78006 0.80082 0.78355 1.18639 1.21251 1.22663 1.20637 0.83996 0.97370 0.91943 1.21482 0.89227 0.95507 0.90283 1.20915 1.00233 0.91806 1.03180 1.67500 1.08432 1.30932 1.15666 0.88499 0.90925 0.87633 0.79915 0.81425 0.75172 0.90702 0.89455 0.88588 0.92882 0.90368 0.94556 0.93655 0.94539 0.98168 0.95926 0.91511 0.90177 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.16 71.24 0.72 -0.48 16 2 C 0.14 2.83 6.78 42.57 0.29 3.12 16 3 C -0.18 -2.88 9.72 22.33 0.22 -2.66 16 4 C -0.03 -0.65 9.64 22.73 0.22 -0.43 16 5 C -0.21 -6.31 5.89 -19.99 -0.12 -6.43 16 6 C 0.55 20.07 7.69 86.79 0.67 20.74 16 7 O -0.57 -25.73 13.01 -3.88 -0.05 -25.78 16 8 N -0.70 -22.17 5.03 -445.02 -2.24 -24.41 16 9 C 0.13 5.04 2.60 45.07 0.12 5.15 16 10 H 0.06 2.46 7.58 -2.39 -0.02 2.45 16 11 C -0.11 -3.02 5.35 30.62 0.16 -2.86 16 12 C -0.12 -3.58 5.37 30.67 0.16 -3.42 16 13 C 0.15 6.11 3.49 44.97 0.16 6.27 16 14 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 15 C -0.13 -4.63 8.05 71.98 0.58 -4.05 16 16 N -0.60 -30.40 2.93 -675.21 -1.98 -32.37 16 17 C -0.25 -14.34 8.27 84.03 0.70 -13.65 16 18 H 0.06 3.55 6.55 -2.91 -0.02 3.53 16 19 C -0.04 -2.42 4.94 84.86 0.42 -2.00 16 20 N -0.93 -57.81 11.83 21.65 0.26 -57.56 16 21 Si 0.95 47.61 29.57 68.60 2.03 49.64 16 22 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 24 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 25 C 0.19 9.31 4.83 86.36 0.42 9.72 16 26 C 0.17 5.42 6.82 42.89 0.29 5.71 16 27 C -0.10 -3.39 8.89 71.24 0.63 -2.76 16 28 N -0.51 -14.28 10.17 -171.06 -1.74 -16.02 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.65 8.07 -2.39 -0.02 0.63 16 32 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 33 H 0.17 2.26 6.55 -2.91 -0.02 2.24 16 34 H 0.41 9.31 6.73 -92.71 -0.62 8.68 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.04 1.48 7.70 -2.39 -0.02 1.46 16 41 H 0.04 1.69 7.40 -2.39 -0.02 1.67 16 42 H 0.25 14.94 8.31 -92.71 -0.77 14.16 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.02 1.34 6.80 -2.38 -0.02 1.33 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.09 3.13 5.82 -2.38 -0.01 3.11 16 Total: -1.00 -78.79 371.51 2.26 -76.53 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.35 Total: 18.01 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.64 Total: 11.97 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -5.70 Total: -130.36 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -78.79 2.26 -76.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072096188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.095 kcal (2) G-P(sol) polarization free energy of solvation -78.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds