Wall clock time and date at job start Tue Mar 31 2020 11:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38355 * 119.45961 * 2 1 4 4 C 1.38355 * 119.30120 * 180.23388 * 3 2 1 5 5 C 1.40017 * 118.29013 * 359.52411 * 4 3 2 6 6 C 1.47843 * 120.56205 * 180.27008 * 5 4 3 7 7 O 1.21547 * 120.00102 * 173.76148 * 6 5 4 8 8 N 1.34773 * 119.99628 * 353.77344 * 6 5 4 9 9 C 1.46505 * 119.99775 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46949 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.43861 * 307.54212 * 10 9 8 12 12 C 1.54891 * 110.48373 * 70.22641 * 10 9 8 13 13 C 1.54895 * 102.74806 * 156.62145 * 12 10 9 14 14 C 1.54272 * 104.19142 * 322.05471 * 13 12 10 15 15 H 1.09000 * 110.06874 * 142.91525 * 14 13 12 16 16 N 1.46493 * 110.03273 * 264.32458 * 14 13 12 17 17 C 1.36940 * 120.00123 * 272.16651 * 16 14 13 18 18 H 1.07995 * 119.99975 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99869 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00246 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00111 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47250 * 90.00185 * 21 19 17 23 23 H 1.48493 * 109.47526 * 210.00826 * 21 19 17 24 24 H 1.48511 * 109.47028 * 330.00493 * 21 19 17 25 25 C 1.53869 * 106.59830 * 23.61333 * 14 13 12 26 26 C 1.39521 * 118.88184 * 0.25474 * 5 4 3 27 27 C 1.50703 * 119.71860 * 179.97438 * 26 5 4 28 28 N 1.31697 * 120.56796 * 359.97438 * 26 5 4 29 29 H 1.09010 * 109.47030 * 270.24762 * 1 2 3 30 30 H 1.08999 * 109.47267 * 30.24992 * 1 2 3 31 31 H 1.08996 * 109.47325 * 150.24912 * 1 2 3 32 32 H 1.08001 * 120.34582 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.85311 * 179.80405 * 4 3 2 34 34 H 0.97003 * 120.00412 * 359.97438 * 8 6 5 35 35 H 1.08996 * 109.46741 * 299.99487 * 9 8 6 36 36 H 1.08994 * 109.46899 * 60.00021 * 9 8 6 37 37 H 1.09001 * 110.75835 * 274.93131 * 12 10 9 38 38 H 1.08996 * 110.76142 * 38.30741 * 12 10 9 39 39 H 1.08996 * 110.48846 * 203.37995 * 13 12 10 40 40 H 1.08996 * 110.60302 * 80.78902 * 13 12 10 41 41 H 0.97004 * 120.00240 * 92.17149 * 16 14 13 42 42 H 0.96997 * 120.00300 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.03239 * 240.71264 * 25 14 13 44 44 H 1.09002 * 110.03225 * 119.28658 * 25 14 13 45 45 H 1.09002 * 109.46664 * 83.42951 * 27 26 5 46 46 H 1.09000 * 109.47179 * 203.42181 * 27 26 5 47 47 H 1.09001 * 109.47002 * 323.43028 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2008 -0.0049 5 6 4.2312 -0.0339 0.0005 6 6 5.7083 -0.0966 0.0016 7 8 6.2711 -1.1673 0.1207 8 7 6.4307 1.0337 -0.1292 9 6 7.8945 0.9717 -0.1275 10 6 8.4648 2.3820 -0.2902 11 1 8.0262 2.8721 -1.1594 12 6 8.2164 3.2181 0.9898 13 6 9.3207 4.3014 0.9102 14 6 10.5456 3.5520 0.3464 15 1 11.1005 4.1997 -0.3323 16 7 11.4132 3.1127 1.4420 17 6 12.3870 3.9478 1.9212 18 1 12.5151 4.9303 1.4918 19 6 13.2087 3.5316 2.9598 20 7 13.0522 2.3343 3.4835 21 14 14.5366 4.6709 3.6140 22 1 13.9811 5.4974 4.7156 23 1 15.6734 3.8640 4.1254 24 1 15.0110 5.5573 2.5210 25 6 10.0014 2.3318 -0.4168 26 6 3.4716 -1.2042 0.0051 27 6 4.1627 -2.5434 0.0104 28 7 2.1558 -1.1487 0.0050 29 1 -0.3633 0.0044 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3634 -0.8922 -0.5099 32 1 1.6443 2.1381 0.0004 33 1 4.1274 2.1265 -0.0082 34 1 5.9816 1.8881 -0.2244 35 1 8.2390 0.5465 0.8151 36 1 8.2325 0.3460 -0.9535 37 1 7.2263 3.6735 0.9677 38 1 8.3407 2.6047 1.8822 39 1 9.5390 4.6972 1.9020 40 1 9.0219 5.1049 0.2371 41 1 11.2979 2.2303 1.8280 42 1 13.6261 2.0437 4.2095 43 1 10.3828 1.4126 0.0280 44 1 10.2916 2.3877 -1.4660 45 1 4.4338 -2.8082 1.0324 46 1 3.4914 -3.3003 -0.3951 47 1 5.0628 -2.4902 -0.6021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086882019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:09 Heat of formation + Delta-G solvation = -6.241813 kcal Electronic energy + Delta-G solvation = -25772.075259 eV Core-core repulsion = 22147.177625 eV Total energy + Delta-G solvation = -3624.897634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08308 -39.39273 -38.11106 -35.16062 -33.83461 -33.63704 -32.89995 -30.69521 -29.35643 -29.10734 -27.82879 -26.94167 -24.34770 -23.26173 -23.17946 -22.28387 -20.87908 -19.94597 -19.21044 -17.94161 -17.11970 -17.10046 -15.87828 -15.75900 -15.72077 -15.21355 -15.00657 -14.62154 -14.56490 -13.89489 -13.64563 -13.62798 -13.50577 -13.25074 -13.13942 -12.66419 -12.64120 -12.52218 -12.24093 -12.19935 -12.10384 -11.42320 -11.22496 -10.81871 -10.74933 -10.60729 -10.51558 -10.28383 -10.23378 -10.20818 -10.14611 -9.95430 -9.64417 -9.58688 -9.30477 -8.99102 -8.88204 -6.93634 -5.75998 -3.04433 0.33447 0.84195 2.65769 2.98068 3.43163 3.47955 3.48391 3.50202 3.81805 4.23265 4.34024 4.41410 4.59126 4.63832 4.82622 4.92682 4.99274 5.05591 5.09599 5.15457 5.22207 5.42586 5.53629 5.54419 5.55506 5.60250 5.62843 5.70757 5.72201 5.85165 5.88457 5.97374 6.00102 6.07343 6.09460 6.19833 6.32152 6.32919 6.39710 6.45052 6.64176 6.73283 6.90054 7.08854 7.32197 7.60935 7.71261 8.05004 8.43204 9.53763 10.13317 10.47107 11.46549 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025453 B = 0.002204 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.811605 B =12698.579430 C =13051.259436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.154 3.846 3 C -0.189 4.189 4 C -0.035 4.035 5 C -0.197 4.197 6 C 0.560 3.440 7 O -0.527 6.527 8 N -0.720 5.720 9 C 0.126 3.874 10 C -0.104 4.104 11 H 0.074 0.926 12 C -0.113 4.113 13 C -0.146 4.146 14 C 0.174 3.826 15 H 0.048 0.952 16 N -0.721 5.721 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.121 4.121 26 C 0.196 3.804 27 C -0.111 4.111 28 N -0.492 5.492 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.397 0.603 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.046 -2.249 -10.239 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.016 3.984 3 C -0.209 4.209 4 C -0.061 4.061 5 C -0.202 4.202 6 C 0.346 3.654 7 O -0.405 6.405 8 N -0.371 5.371 9 C 0.004 3.996 10 C -0.123 4.123 11 H 0.092 0.908 12 C -0.150 4.150 13 C -0.187 4.187 14 C 0.064 3.936 15 H 0.066 0.934 16 N -0.362 5.362 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.160 4.160 26 C 0.057 3.943 27 C -0.167 4.167 28 N -0.203 5.203 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.232 0.768 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.923 -3.665 -10.120 27.148 hybrid contribution 0.927 1.770 0.612 2.090 sum -23.996 -1.894 -9.508 25.880 Atomic orbital electron populations 1.20795 0.88445 1.03800 1.03463 1.21552 0.97306 0.88281 0.91281 1.21881 0.94490 0.99555 1.04995 1.21763 0.94742 0.97251 0.92377 1.20797 0.94618 0.94913 1.09876 1.17970 0.86143 0.84299 0.76945 1.90751 1.72284 1.28187 1.49287 1.45956 1.07963 1.09084 1.74130 1.21583 0.77620 0.97662 1.02779 1.22244 0.97292 0.93818 0.98910 0.90750 1.22504 0.97898 0.97647 0.96991 1.23123 0.96780 0.96904 1.01882 1.20795 0.90310 0.92672 0.89831 0.93372 1.42546 1.37168 1.17864 1.38594 1.19251 1.08060 0.96879 1.12832 0.91237 1.24747 1.00063 0.96883 0.99362 1.69658 1.41702 1.18225 1.28475 0.86211 0.81577 0.79725 0.78800 1.21805 1.21818 1.20808 1.22467 0.92399 1.00734 1.00412 1.21541 0.88466 0.95531 0.88732 1.21072 1.00587 0.90635 1.04438 1.67515 1.09070 1.29077 1.14629 0.89935 0.90364 0.90157 0.84141 0.84333 0.76802 0.90673 0.91356 0.93115 0.91237 0.90962 0.93342 0.78254 0.93526 0.90827 0.92014 0.89726 0.91289 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.22 16 2 C 0.15 1.35 6.78 -82.51 -0.56 0.79 16 3 C -0.19 -1.41 9.72 -39.49 -0.38 -1.79 16 4 C -0.04 -0.29 9.63 -38.87 -0.37 -0.67 16 5 C -0.20 -2.18 5.89 -104.82 -0.62 -2.79 16 6 C 0.56 7.07 7.70 -12.33 -0.10 6.98 16 7 O -0.53 -8.21 13.38 5.32 0.07 -8.13 16 8 N -0.72 -7.79 5.40 -61.25 -0.33 -8.12 16 9 C 0.13 1.58 4.96 -4.04 -0.02 1.56 16 10 C -0.10 -1.29 2.89 -88.96 -0.26 -1.54 16 11 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 12 C -0.11 -1.56 6.19 -24.73 -0.15 -1.71 16 13 C -0.15 -2.44 6.54 -25.07 -0.16 -2.60 16 14 C 0.17 3.31 3.55 -66.82 -0.24 3.08 16 15 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 16 N -0.72 -17.64 5.08 -52.35 -0.27 -17.91 16 17 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 21 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.12 -1.87 6.14 -25.62 -0.16 -2.03 16 26 C 0.20 2.31 6.82 -82.17 -0.56 1.75 16 27 C -0.11 -1.24 8.87 36.01 0.32 -0.92 16 28 N -0.49 -5.56 10.17 -5.42 -0.06 -5.62 16 29 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.08 0.26 8.08 -51.93 -0.42 -0.15 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 33 H 0.14 0.77 6.57 -52.49 -0.34 0.42 16 34 H 0.40 3.25 6.59 -40.82 -0.27 2.98 16 35 H 0.07 1.10 8.02 -51.93 -0.42 0.69 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.11 7.97 -51.93 -0.41 0.69 16 39 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.38 10.05 7.52 -40.82 -0.31 9.75 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 1.25 7.31 -51.93 -0.38 0.87 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.27 5.86 -51.93 -0.30 0.97 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -32.72 380.76 -9.75 -42.46 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.46 Total: 8.99 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.14 Total: -7.32 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.07 Total: -59.06 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.07 Total: -8.13 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.72 -9.75 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086882019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.221 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds