Wall clock time and date at job start Tue Mar 31 2020 11:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38355 * 119.45961 * 2 1 4 4 C 1.38355 * 119.30120 * 180.23388 * 3 2 1 5 5 C 1.40017 * 118.29013 * 359.52411 * 4 3 2 6 6 C 1.47843 * 120.56205 * 180.27008 * 5 4 3 7 7 O 1.21547 * 120.00102 * 173.76148 * 6 5 4 8 8 N 1.34773 * 119.99628 * 353.77344 * 6 5 4 9 9 C 1.46505 * 119.99775 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46949 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.43861 * 307.54212 * 10 9 8 12 12 C 1.54891 * 110.48373 * 70.22641 * 10 9 8 13 13 C 1.54895 * 102.74806 * 156.62145 * 12 10 9 14 14 C 1.54272 * 104.19142 * 322.05471 * 13 12 10 15 15 H 1.09000 * 110.06874 * 142.91525 * 14 13 12 16 16 N 1.46493 * 110.03273 * 264.32458 * 14 13 12 17 17 C 1.36940 * 120.00123 * 272.16651 * 16 14 13 18 18 H 1.07995 * 119.99975 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99869 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00246 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00111 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47250 * 90.00185 * 21 19 17 23 23 H 1.48493 * 109.47526 * 210.00826 * 21 19 17 24 24 H 1.48511 * 109.47028 * 330.00493 * 21 19 17 25 25 C 1.53869 * 106.59830 * 23.61333 * 14 13 12 26 26 C 1.39521 * 118.88184 * 0.25474 * 5 4 3 27 27 C 1.50703 * 119.71860 * 179.97438 * 26 5 4 28 28 N 1.31697 * 120.56796 * 359.97438 * 26 5 4 29 29 H 1.09010 * 109.47030 * 270.24762 * 1 2 3 30 30 H 1.08999 * 109.47267 * 30.24992 * 1 2 3 31 31 H 1.08996 * 109.47325 * 150.24912 * 1 2 3 32 32 H 1.08001 * 120.34582 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.85311 * 179.80405 * 4 3 2 34 34 H 0.97003 * 120.00412 * 359.97438 * 8 6 5 35 35 H 1.08996 * 109.46741 * 299.99487 * 9 8 6 36 36 H 1.08994 * 109.46899 * 60.00021 * 9 8 6 37 37 H 1.09001 * 110.75835 * 274.93131 * 12 10 9 38 38 H 1.08996 * 110.76142 * 38.30741 * 12 10 9 39 39 H 1.08996 * 110.48846 * 203.37995 * 13 12 10 40 40 H 1.08996 * 110.60302 * 80.78902 * 13 12 10 41 41 H 0.97004 * 120.00240 * 92.17149 * 16 14 13 42 42 H 0.96997 * 120.00300 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.03239 * 240.71264 * 25 14 13 44 44 H 1.09002 * 110.03225 * 119.28658 * 25 14 13 45 45 H 1.09002 * 109.46664 * 83.42951 * 27 26 5 46 46 H 1.09000 * 109.47179 * 203.42181 * 27 26 5 47 47 H 1.09001 * 109.47002 * 323.43028 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2008 -0.0049 5 6 4.2312 -0.0339 0.0005 6 6 5.7083 -0.0966 0.0016 7 8 6.2711 -1.1673 0.1207 8 7 6.4307 1.0337 -0.1292 9 6 7.8945 0.9717 -0.1275 10 6 8.4648 2.3820 -0.2902 11 1 8.0262 2.8721 -1.1594 12 6 8.2164 3.2181 0.9898 13 6 9.3207 4.3014 0.9102 14 6 10.5456 3.5520 0.3464 15 1 11.1005 4.1997 -0.3323 16 7 11.4132 3.1127 1.4420 17 6 12.3870 3.9478 1.9212 18 1 12.5151 4.9303 1.4918 19 6 13.2087 3.5316 2.9598 20 7 13.0522 2.3343 3.4835 21 14 14.5366 4.6709 3.6140 22 1 13.9811 5.4974 4.7156 23 1 15.6734 3.8640 4.1254 24 1 15.0110 5.5573 2.5210 25 6 10.0014 2.3318 -0.4168 26 6 3.4716 -1.2042 0.0051 27 6 4.1627 -2.5434 0.0104 28 7 2.1558 -1.1487 0.0050 29 1 -0.3633 0.0044 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3634 -0.8922 -0.5099 32 1 1.6443 2.1381 0.0004 33 1 4.1274 2.1265 -0.0082 34 1 5.9816 1.8881 -0.2244 35 1 8.2390 0.5465 0.8151 36 1 8.2325 0.3460 -0.9535 37 1 7.2263 3.6735 0.9677 38 1 8.3407 2.6047 1.8822 39 1 9.5390 4.6972 1.9020 40 1 9.0219 5.1049 0.2371 41 1 11.2979 2.2303 1.8280 42 1 13.6261 2.0437 4.2095 43 1 10.3828 1.4126 0.0280 44 1 10.2916 2.3877 -1.4660 45 1 4.4338 -2.8082 1.0324 46 1 3.4914 -3.3003 -0.3951 47 1 5.0628 -2.4902 -0.6021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086882019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:08 Heat of formation + Delta-G solvation = -27.707063 kcal Electronic energy + Delta-G solvation = -25773.006063 eV Core-core repulsion = 22147.177625 eV Total energy + Delta-G solvation = -3625.828437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86416 -40.33857 -39.36259 -36.41619 -35.14246 -34.53475 -33.87363 -32.42154 -30.37609 -29.99156 -29.02886 -28.04991 -25.74997 -24.91086 -23.90713 -23.06744 -21.82428 -21.07818 -20.66109 -19.16698 -18.75767 -17.93007 -16.96621 -16.73673 -16.57244 -16.37364 -16.15043 -15.88461 -15.56024 -15.26979 -15.06941 -14.53479 -14.42884 -14.28956 -14.15173 -13.98251 -13.50365 -13.26616 -13.12559 -13.07951 -12.95747 -12.89831 -12.85234 -12.47622 -12.34342 -12.15073 -11.92089 -11.70908 -11.60526 -11.48889 -11.39484 -11.02032 -10.90997 -10.88834 -10.44809 -10.20947 -9.77545 -8.95492 -7.92735 -5.20065 -0.39650 0.18279 1.46385 1.47895 1.56266 1.78527 2.05971 2.57104 2.72973 3.16521 3.39142 3.58330 3.64297 3.71983 3.73687 3.81064 3.85998 4.03331 4.21521 4.33843 4.45334 4.55689 4.55848 4.61331 4.63509 4.69788 4.70235 4.76461 4.80637 4.81033 4.85481 4.94610 4.96539 5.06918 5.09779 5.15468 5.15843 5.23725 5.24630 5.40778 5.46228 5.52665 5.59744 5.65655 5.68430 6.30821 6.47054 6.90328 7.15207 7.35285 8.16159 8.36358 9.30923 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025453 B = 0.002204 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.811605 B =12698.579430 C =13051.259436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.142 3.858 3 C -0.180 4.180 4 C -0.031 4.031 5 C -0.214 4.214 6 C 0.557 3.443 7 O -0.567 6.567 8 N -0.705 5.705 9 C 0.134 3.866 10 C -0.083 4.083 11 H 0.112 0.888 12 C -0.106 4.106 13 C -0.139 4.139 14 C 0.161 3.839 15 H 0.044 0.956 16 N -0.735 5.735 17 C -0.234 4.234 18 H 0.076 0.924 19 C -0.082 4.082 20 N -0.972 5.972 21 Si 0.971 3.029 22 H -0.289 1.289 23 H -0.299 1.299 24 H -0.268 1.268 25 C -0.117 4.117 26 C 0.173 3.827 27 C -0.105 4.105 28 N -0.517 5.517 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.180 0.820 33 H 0.171 0.829 34 H 0.414 0.586 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.584 0.642 -11.817 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.004 3.996 3 C -0.199 4.199 4 C -0.056 4.056 5 C -0.219 4.219 6 C 0.345 3.655 7 O -0.448 6.448 8 N -0.357 5.357 9 C 0.011 3.989 10 C -0.102 4.102 11 H 0.130 0.870 12 C -0.144 4.144 13 C -0.179 4.179 14 C 0.052 3.948 15 H 0.062 0.938 16 N -0.375 5.375 17 C -0.366 4.366 18 H 0.094 0.906 19 C -0.274 4.274 20 N -0.623 5.623 21 Si 0.800 3.200 22 H -0.216 1.216 23 H -0.225 1.225 24 H -0.193 1.193 25 C -0.156 4.156 26 C 0.035 3.965 27 C -0.162 4.162 28 N -0.229 5.229 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.197 0.803 33 H 0.188 0.812 34 H 0.252 0.748 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.201 0.799 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.505 -0.707 -11.747 29.917 hybrid contribution 1.600 0.914 1.037 2.114 sum -25.905 0.207 -10.711 28.032 Atomic orbital electron populations 1.20906 0.86172 1.04874 1.04343 1.22228 0.98936 0.88231 0.90177 1.22318 0.94236 1.00503 1.02887 1.22141 0.95448 0.97110 0.90935 1.20702 0.93393 0.96094 1.11750 1.18305 0.87018 0.84017 0.76176 1.90737 1.73177 1.29733 1.51105 1.45729 1.07030 1.09526 1.73437 1.21338 0.78723 0.97636 1.01241 1.22113 0.94959 0.93542 0.99580 0.86964 1.22454 0.98917 0.96572 0.96447 1.22953 0.96426 0.98174 1.00364 1.21153 0.90573 0.94420 0.88620 0.93783 1.42777 1.37778 1.17030 1.39892 1.19650 1.07831 0.97133 1.11993 0.90627 1.25556 1.02878 0.98469 1.00461 1.69826 1.43001 1.20184 1.29326 0.85170 0.78641 0.77859 0.78311 1.21595 1.22548 1.19312 1.22382 0.94660 0.97870 1.00723 1.21567 0.89115 0.95761 0.90097 1.20935 1.00166 0.91501 1.03549 1.67515 1.08793 1.30846 1.15702 0.88998 0.87606 0.90788 0.80286 0.81170 0.74813 0.93606 0.91549 0.89178 0.94163 0.94423 0.90193 0.79852 0.94260 0.93206 0.89913 0.90721 0.90623 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.16 71.24 0.72 -0.13 16 2 C 0.14 2.16 6.78 42.57 0.29 2.45 16 3 C -0.18 -1.96 9.72 22.33 0.22 -1.75 16 4 C -0.03 -0.40 9.63 22.73 0.22 -0.18 16 5 C -0.21 -4.51 5.89 -19.99 -0.12 -4.63 16 6 C 0.56 13.88 7.70 86.79 0.67 14.54 16 7 O -0.57 -18.43 13.38 -3.86 -0.05 -18.48 16 8 N -0.71 -13.85 5.40 -465.99 -2.52 -16.37 16 9 C 0.13 3.23 4.96 86.38 0.43 3.66 16 10 C -0.08 -1.84 2.89 -9.72 -0.03 -1.86 16 11 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 12 C -0.11 -2.68 6.19 31.89 0.20 -2.48 16 13 C -0.14 -4.37 6.54 31.67 0.21 -4.16 16 14 C 0.16 5.99 3.55 45.72 0.16 6.15 16 15 H 0.04 1.67 8.09 -2.39 -0.02 1.65 16 16 N -0.73 -36.77 5.08 -319.52 -1.62 -38.40 16 17 C -0.23 -12.98 9.96 84.03 0.84 -12.14 16 18 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 20 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 21 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 C -0.12 -3.49 6.14 31.32 0.19 -3.30 16 26 C 0.17 4.11 6.82 42.89 0.29 4.40 16 27 C -0.10 -2.51 8.87 71.24 0.63 -1.88 16 28 N -0.52 -11.37 10.17 -171.05 -1.74 -13.11 16 29 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.11 0.27 8.08 -2.39 -0.02 0.25 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.17 1.02 6.57 -2.91 -0.02 1.00 16 34 H 0.41 5.11 6.59 -92.71 -0.61 4.50 16 35 H 0.05 1.39 8.02 -2.39 -0.02 1.37 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.04 1.26 7.97 -2.39 -0.02 1.24 16 39 H 0.04 1.44 8.04 -2.39 -0.02 1.42 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.37 20.25 7.52 -92.71 -0.70 19.55 16 42 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.05 1.73 7.31 -2.38 -0.02 1.71 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 47 H 0.09 2.38 5.86 -2.39 -0.01 2.37 16 Total: -1.00 -75.58 380.76 1.44 -74.14 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.32 Total: 29.49 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.39 Total: -5.60 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -5.60 Total: -128.21 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -75.58 1.44 -74.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086882019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.430 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds