Wall clock time and date at job start Tue Mar 31 2020 12:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.50035 * 2 1 4 4 C 1.53033 * 109.49773 * 239.89896 * 2 1 3 5 5 C 1.53043 * 109.53987 * 301.41699 * 4 2 1 6 6 C 1.53624 * 109.24087 * 298.51017 * 5 4 2 7 7 H 1.09009 * 109.73812 * 295.12158 * 6 5 4 8 8 C 1.52998 * 109.66465 * 174.55013 * 6 5 4 9 9 N 1.46500 * 109.47027 * 180.70809 * 8 6 5 10 10 C 1.34775 * 120.00100 * 179.97438 * 9 8 6 11 11 O 1.21520 * 119.99680 * 0.02562 * 10 9 8 12 12 C 1.48144 * 120.00240 * 180.02562 * 10 9 8 13 13 C 1.39817 * 120.92382 * 359.71601 * 12 10 9 14 14 C 1.38149 * 119.00330 * 179.74945 * 13 12 10 15 15 N 1.31815 * 120.89352 * 0.55010 * 14 13 12 16 16 C 1.31807 * 122.05000 * 359.72254 * 15 14 13 17 17 C 1.38147 * 120.89562 * 359.97438 * 16 15 14 18 18 N 1.46926 * 108.54474 * 54.85539 * 6 5 4 19 19 C 1.36934 * 120.63348 * 126.36999 * 18 6 5 20 20 H 1.08003 * 119.99452 * 304.19399 * 19 18 6 21 21 C 1.38803 * 120.00199 * 124.19415 * 19 18 6 22 22 N 1.31625 * 119.99772 * 159.09582 * 21 19 18 23 23 Si 1.86803 * 120.00127 * 339.09657 * 21 19 18 24 24 H 1.48496 * 109.46873 * 275.68150 * 23 21 19 25 25 H 1.48500 * 109.46923 * 35.68200 * 23 21 19 26 26 H 1.48500 * 109.46810 * 155.68378 * 23 21 19 27 27 C 1.46932 * 118.73677 * 306.09474 * 18 6 5 28 28 H 1.09005 * 109.47010 * 299.93953 * 1 2 3 29 29 H 1.08999 * 109.46876 * 59.93771 * 1 2 3 30 30 H 1.08997 * 109.47642 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47185 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47197 * 300.06344 * 3 2 1 33 33 H 1.09002 * 109.47258 * 60.06341 * 3 2 1 34 34 H 1.09007 * 109.46281 * 61.43680 * 4 2 1 35 35 H 1.09008 * 109.46366 * 181.39573 * 4 2 1 36 36 H 1.08995 * 109.49448 * 58.58730 * 5 4 2 37 37 H 1.08996 * 109.49644 * 178.68654 * 5 4 2 38 38 H 1.08996 * 109.46867 * 300.70428 * 8 6 5 39 39 H 1.08993 * 109.47229 * 60.70988 * 8 6 5 40 40 H 0.97005 * 120.00226 * 0.02562 * 9 8 6 41 41 H 1.08007 * 120.49525 * 0.02562 * 13 12 10 42 42 H 1.08002 * 119.55133 * 180.27032 * 14 13 12 43 43 H 1.07999 * 119.54806 * 180.02562 * 16 15 14 44 44 H 1.08008 * 120.49944 * 179.97438 * 17 16 15 45 45 H 0.96997 * 120.00272 * 359.97438 * 22 21 19 46 46 H 1.08993 * 109.58513 * 173.64589 * 27 18 6 47 47 H 1.08999 * 109.58826 * 293.92947 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0408 -0.7235 -1.2480 5 6 1.5029 -2.1562 -1.2653 6 6 2.0188 -2.9055 -0.0274 7 1 3.1032 -3.0023 -0.0810 8 6 1.3796 -4.2941 0.0374 9 7 1.8613 -4.9984 1.2283 10 6 1.4297 -6.2473 1.4933 11 8 0.6411 -6.7893 0.7442 12 6 1.9164 -6.9593 2.6978 13 6 2.8282 -6.3562 3.5696 14 6 3.2517 -7.0544 4.6839 15 7 2.8164 -8.2753 4.9235 16 6 1.9613 -8.8823 4.1249 17 6 1.4812 -8.2551 2.9915 18 7 1.6514 -2.1378 1.1703 19 6 0.9638 -2.7307 2.1954 20 1 0.0201 -3.2187 2.0014 21 6 1.4797 -2.7045 3.4837 22 7 0.6829 -2.8865 4.5155 23 14 3.3047 -2.4109 3.7533 24 1 4.0373 -3.6960 3.6235 25 1 3.8067 -1.4501 2.7383 26 1 3.5208 -1.8531 5.1125 27 6 2.0413 -0.7234 1.2499 28 1 -0.3633 0.5129 0.8906 29 1 -0.3633 0.5148 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1307 1.4417 -0.0005 32 1 1.6767 1.9566 -0.8894 33 1 1.6786 1.9559 0.8906 34 1 1.6988 -0.1965 -2.1389 35 1 3.1306 -0.7449 -1.2350 36 1 0.4132 -2.1358 -1.2534 37 1 1.8480 -2.6635 -2.1661 38 1 0.2955 -4.1929 0.0889 39 1 1.6498 -4.8604 -0.8538 40 1 2.4905 -4.5655 1.8264 41 1 3.1924 -5.3578 3.3771 42 1 3.9525 -6.5954 5.3655 43 1 1.6310 -9.8832 4.3603 44 1 0.7810 -8.7587 2.3413 45 1 -0.2648 -3.0386 4.3756 46 1 1.6007 -0.2724 2.1390 47 1 3.1273 -0.6460 1.3008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089600497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:28 Heat of formation + Delta-G solvation = 10.187951 kcal Electronic energy + Delta-G solvation = -28230.577644 eV Core-core repulsion = 24606.392458 eV Total energy + Delta-G solvation = -3624.185186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.21844 -39.14117 -38.27610 -35.26149 -33.26614 -32.74612 -31.91731 -30.95474 -30.77073 -27.73234 -26.82138 -25.35350 -24.70376 -23.35615 -22.76351 -22.25466 -20.25665 -19.98195 -18.45604 -17.87555 -17.04464 -16.28536 -15.51671 -15.40324 -15.08599 -14.90493 -14.59940 -14.38127 -14.23883 -13.79407 -13.58095 -13.45582 -13.37962 -13.29521 -12.92877 -12.74640 -12.24771 -12.12294 -11.73142 -11.59873 -11.56138 -11.37127 -11.04829 -10.85365 -10.70460 -10.49750 -10.28047 -9.95996 -9.80532 -9.70517 -9.67468 -9.60806 -9.30984 -9.14538 -8.98097 -8.59098 -8.29116 -6.99946 -6.17026 -3.78888 1.02436 1.31402 3.12650 3.31189 3.34173 3.48541 3.69487 4.16671 4.37966 4.59585 4.83195 4.95633 5.07088 5.11813 5.23766 5.24807 5.27485 5.32475 5.34539 5.56235 5.68172 5.75083 5.81939 5.91621 5.94103 5.98127 6.03083 6.07271 6.12782 6.18784 6.27022 6.27404 6.30433 6.34540 6.35289 6.48116 6.57431 6.70337 6.72453 6.79984 6.81371 6.91531 7.03991 7.08293 8.07321 8.12072 8.15483 8.47403 8.71457 8.91597 9.38893 10.15945 10.88348 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.004891 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.442507 B = 5723.185108 C = 6639.869422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.096 4.096 5 C -0.129 4.129 6 C 0.151 3.849 7 H 0.033 0.967 8 C 0.141 3.859 9 N -0.677 5.677 10 C 0.550 3.450 11 O -0.556 6.556 12 C -0.076 4.076 13 C -0.134 4.134 14 C 0.095 3.905 15 N -0.475 5.475 16 C 0.086 3.914 17 C -0.121 4.121 18 N -0.595 5.595 19 C -0.348 4.348 20 H 0.052 0.948 21 C 0.013 3.987 22 N -0.897 5.897 23 Si 1.019 2.981 24 H -0.288 1.288 25 H -0.267 1.267 26 H -0.290 1.290 27 C 0.152 3.848 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.408 0.592 41 H 0.142 0.858 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.144 0.856 45 H 0.269 0.731 46 H 0.062 0.938 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 -0.682 -6.609 8.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.089 4.089 3 C -0.196 4.196 4 C -0.133 4.133 5 C -0.169 4.169 6 C 0.044 3.956 7 H 0.051 0.949 8 C 0.017 3.983 9 N -0.326 5.326 10 C 0.335 3.665 11 O -0.437 6.437 12 C -0.088 4.088 13 C -0.154 4.154 14 C -0.061 4.061 15 N -0.185 5.185 16 C -0.071 4.071 17 C -0.142 4.142 18 N -0.320 5.320 19 C -0.478 4.478 20 H 0.069 0.931 21 C -0.194 4.194 22 N -0.532 5.532 23 Si 0.849 3.151 24 H -0.217 1.217 25 H -0.193 1.193 26 H -0.216 1.216 27 C 0.027 3.973 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.246 0.754 41 H 0.160 0.840 42 H 0.177 0.823 43 H 0.176 0.824 44 H 0.162 0.838 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.344 -1.326 -5.221 8.322 hybrid contribution -1.299 0.755 -1.507 2.128 sum 5.045 -0.571 -6.728 8.429 Atomic orbital electron populations 1.21705 0.94684 1.02322 0.99528 1.21083 0.96175 0.94209 0.97430 1.21815 1.00412 0.96362 1.00967 1.21408 0.99642 0.95431 0.96867 1.22048 1.01443 0.95827 0.97550 1.21053 0.95840 0.89799 0.88869 0.94896 1.21220 0.99853 0.91348 0.85860 1.45835 1.46183 1.13649 1.26972 1.18106 0.81659 0.82003 0.84695 1.90696 1.35375 1.67817 1.49767 1.20475 0.97159 0.95167 0.95962 1.22680 0.96423 1.01292 0.95017 1.22683 0.98008 0.90200 0.95235 1.67515 1.10430 1.10376 1.30169 1.22691 0.93775 0.99924 0.90691 1.22247 0.99582 0.94187 0.98191 1.44294 1.66020 1.04616 1.17079 1.19812 1.02630 1.37871 0.87461 0.93058 1.26588 1.05051 0.95781 0.91986 1.70867 1.06368 1.44410 1.31506 0.84482 0.76971 0.77167 0.76526 1.21671 1.19269 1.21577 1.21470 0.96373 0.84683 0.94782 0.93543 0.94698 0.91484 0.93224 0.93491 0.92951 0.93218 0.92793 0.91464 0.92923 0.91388 0.92508 0.75405 0.84014 0.82342 0.82426 0.83827 0.92073 0.91922 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.99 37.16 0.30 -1.75 16 2 C -0.09 -1.38 0.77 -154.39 -0.12 -1.49 16 3 C -0.14 -1.86 8.48 37.16 0.32 -1.55 16 4 C -0.10 -1.38 4.71 -26.69 -0.13 -1.51 16 5 C -0.13 -1.97 5.05 -26.38 -0.13 -2.10 16 6 C 0.15 2.67 3.03 -67.37 -0.20 2.46 16 7 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 8 C 0.14 2.63 4.55 -4.04 -0.02 2.61 16 9 N -0.68 -13.40 4.13 -61.16 -0.25 -13.66 16 10 C 0.55 11.22 7.80 -12.19 -0.10 11.12 16 11 O -0.56 -12.39 16.45 5.35 0.09 -12.30 16 12 C -0.08 -1.41 5.91 -104.65 -0.62 -2.03 16 13 C -0.13 -2.39 9.62 -39.02 -0.38 -2.76 16 14 C 0.10 1.55 11.17 -17.59 -0.20 1.35 16 15 N -0.48 -7.65 10.33 -13.31 -0.14 -7.78 16 16 C 0.09 1.25 11.17 -17.60 -0.20 1.05 16 17 C -0.12 -1.95 9.68 -39.02 -0.38 -2.33 16 18 N -0.59 -12.06 1.59 -164.52 -0.26 -12.32 16 19 C -0.35 -8.30 6.26 -15.06 -0.09 -8.40 16 20 H 0.05 1.43 7.41 -52.48 -0.39 1.04 16 21 C 0.01 0.31 5.03 -17.43 -0.09 0.22 16 22 N -0.90 -24.84 13.71 55.49 0.76 -24.08 16 23 Si 1.02 22.01 26.06 -169.99 -4.43 17.58 16 24 H -0.29 -5.61 5.51 56.52 0.31 -5.30 16 25 H -0.27 -5.41 4.87 56.52 0.28 -5.13 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.15 2.89 3.30 -3.70 -0.01 2.88 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.24 5.97 -51.93 -0.31 0.93 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.07 1.09 6.33 -51.93 -0.33 0.76 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.42 7.55 -51.93 -0.39 1.02 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.41 8.18 4.10 -40.82 -0.17 8.01 16 41 H 0.14 2.63 4.02 -52.48 -0.21 2.42 16 42 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 44 H 0.14 2.13 7.74 -52.48 -0.41 1.72 16 45 H 0.27 7.66 8.73 -40.82 -0.36 7.31 16 46 H 0.06 1.32 7.67 -51.93 -0.40 0.92 16 47 H 0.03 0.53 6.43 -51.93 -0.33 0.19 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -27.82 357.78 -8.26 -36.09 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -7.38 Total: 13.29 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.04 Total: -2.22 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.11 Total: -57.84 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.43 Total: 17.58 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.82 -8.26 -36.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089600497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.276 kcal (2) G-P(sol) polarization free energy of solvation -27.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds