Wall clock time and date at job start Tue Mar 31 2020 12:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.50035 * 2 1 4 4 C 1.53033 * 109.49773 * 239.89896 * 2 1 3 5 5 C 1.53043 * 109.53987 * 301.41699 * 4 2 1 6 6 C 1.53624 * 109.24087 * 298.51017 * 5 4 2 7 7 H 1.09009 * 109.73812 * 295.12158 * 6 5 4 8 8 C 1.52998 * 109.66465 * 174.55013 * 6 5 4 9 9 N 1.46500 * 109.47027 * 180.70809 * 8 6 5 10 10 C 1.34775 * 120.00100 * 179.97438 * 9 8 6 11 11 O 1.21520 * 119.99680 * 0.02562 * 10 9 8 12 12 C 1.48144 * 120.00240 * 180.02562 * 10 9 8 13 13 C 1.39817 * 120.92382 * 359.71601 * 12 10 9 14 14 C 1.38149 * 119.00330 * 179.74945 * 13 12 10 15 15 N 1.31815 * 120.89352 * 0.55010 * 14 13 12 16 16 C 1.31807 * 122.05000 * 359.72254 * 15 14 13 17 17 C 1.38147 * 120.89562 * 359.97438 * 16 15 14 18 18 N 1.46926 * 108.54474 * 54.85539 * 6 5 4 19 19 C 1.36934 * 120.63348 * 126.36999 * 18 6 5 20 20 H 1.08003 * 119.99452 * 304.19399 * 19 18 6 21 21 C 1.38803 * 120.00199 * 124.19415 * 19 18 6 22 22 N 1.31625 * 119.99772 * 159.09582 * 21 19 18 23 23 Si 1.86803 * 120.00127 * 339.09657 * 21 19 18 24 24 H 1.48496 * 109.46873 * 275.68150 * 23 21 19 25 25 H 1.48500 * 109.46923 * 35.68200 * 23 21 19 26 26 H 1.48500 * 109.46810 * 155.68378 * 23 21 19 27 27 C 1.46932 * 118.73677 * 306.09474 * 18 6 5 28 28 H 1.09005 * 109.47010 * 299.93953 * 1 2 3 29 29 H 1.08999 * 109.46876 * 59.93771 * 1 2 3 30 30 H 1.08997 * 109.47642 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47185 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47197 * 300.06344 * 3 2 1 33 33 H 1.09002 * 109.47258 * 60.06341 * 3 2 1 34 34 H 1.09007 * 109.46281 * 61.43680 * 4 2 1 35 35 H 1.09008 * 109.46366 * 181.39573 * 4 2 1 36 36 H 1.08995 * 109.49448 * 58.58730 * 5 4 2 37 37 H 1.08996 * 109.49644 * 178.68654 * 5 4 2 38 38 H 1.08996 * 109.46867 * 300.70428 * 8 6 5 39 39 H 1.08993 * 109.47229 * 60.70988 * 8 6 5 40 40 H 0.97005 * 120.00226 * 0.02562 * 9 8 6 41 41 H 1.08007 * 120.49525 * 0.02562 * 13 12 10 42 42 H 1.08002 * 119.55133 * 180.27032 * 14 13 12 43 43 H 1.07999 * 119.54806 * 180.02562 * 16 15 14 44 44 H 1.08008 * 120.49944 * 179.97438 * 17 16 15 45 45 H 0.96997 * 120.00272 * 359.97438 * 22 21 19 46 46 H 1.08993 * 109.58513 * 173.64589 * 27 18 6 47 47 H 1.08999 * 109.58826 * 293.92947 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0408 -0.7235 -1.2480 5 6 1.5029 -2.1562 -1.2653 6 6 2.0188 -2.9055 -0.0274 7 1 3.1032 -3.0023 -0.0810 8 6 1.3796 -4.2941 0.0374 9 7 1.8613 -4.9984 1.2283 10 6 1.4297 -6.2473 1.4933 11 8 0.6411 -6.7893 0.7442 12 6 1.9164 -6.9593 2.6978 13 6 2.8282 -6.3562 3.5696 14 6 3.2517 -7.0544 4.6839 15 7 2.8164 -8.2753 4.9235 16 6 1.9613 -8.8823 4.1249 17 6 1.4812 -8.2551 2.9915 18 7 1.6514 -2.1378 1.1703 19 6 0.9638 -2.7307 2.1954 20 1 0.0201 -3.2187 2.0014 21 6 1.4797 -2.7045 3.4837 22 7 0.6829 -2.8865 4.5155 23 14 3.3047 -2.4109 3.7533 24 1 4.0373 -3.6960 3.6235 25 1 3.8067 -1.4501 2.7383 26 1 3.5208 -1.8531 5.1125 27 6 2.0413 -0.7234 1.2499 28 1 -0.3633 0.5129 0.8906 29 1 -0.3633 0.5148 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1307 1.4417 -0.0005 32 1 1.6767 1.9566 -0.8894 33 1 1.6786 1.9559 0.8906 34 1 1.6988 -0.1965 -2.1389 35 1 3.1306 -0.7449 -1.2350 36 1 0.4132 -2.1358 -1.2534 37 1 1.8480 -2.6635 -2.1661 38 1 0.2955 -4.1929 0.0889 39 1 1.6498 -4.8604 -0.8538 40 1 2.4905 -4.5655 1.8264 41 1 3.1924 -5.3578 3.3771 42 1 3.9525 -6.5954 5.3655 43 1 1.6310 -9.8832 4.3603 44 1 0.7810 -8.7587 2.3413 45 1 -0.2648 -3.0386 4.3756 46 1 1.6007 -0.2724 2.1390 47 1 3.1273 -0.6460 1.3008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089600497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:27 Heat of formation + Delta-G solvation = -6.158912 kcal Electronic energy + Delta-G solvation = -28231.286497 eV Core-core repulsion = 24606.392458 eV Total energy + Delta-G solvation = -3624.894039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62316 -40.55795 -39.75706 -36.78507 -35.02074 -34.23575 -33.31771 -32.41747 -32.22369 -29.10842 -28.09755 -27.02979 -26.09900 -24.69582 -24.20128 -23.70317 -21.86006 -21.46108 -20.00784 -19.36346 -18.66074 -17.70284 -16.97227 -16.81840 -16.53514 -16.36385 -16.04434 -15.88983 -15.78224 -15.23726 -14.90795 -14.85034 -14.78156 -14.68546 -14.37997 -14.36683 -13.81902 -13.50887 -13.16268 -12.91367 -12.81902 -12.60691 -12.50113 -12.30519 -12.19287 -12.02877 -11.74576 -11.37921 -11.31657 -11.28152 -11.04614 -11.00159 -10.93832 -10.56916 -10.42829 -10.23304 -9.96755 -8.92278 -8.02252 -5.76886 -0.36033 0.05770 1.40737 1.54688 1.73628 1.80606 2.19889 2.56895 2.82662 3.11983 3.38894 3.44727 3.56475 3.77781 3.90325 3.93046 3.95139 4.03214 4.08471 4.24520 4.33659 4.42834 4.48597 4.57575 4.64295 4.74425 4.76856 4.80800 4.83697 4.87656 4.99032 5.03104 5.03311 5.07256 5.10039 5.14059 5.20829 5.28412 5.40924 5.46195 5.51963 5.56912 5.58257 5.73501 6.03138 6.49420 6.50501 6.82964 7.05712 7.10612 7.58096 8.26338 8.85175 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.004891 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.442507 B = 5723.185108 C = 6639.869422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 C -0.133 4.133 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.150 3.850 7 H 0.052 0.948 8 C 0.142 3.858 9 N -0.678 5.678 10 C 0.543 3.457 11 O -0.583 6.583 12 C -0.100 4.100 13 C -0.147 4.147 14 C 0.094 3.906 15 N -0.481 5.481 16 C 0.099 3.901 17 C -0.124 4.124 18 N -0.604 5.604 19 C -0.316 4.316 20 H -0.001 1.001 21 C -0.026 4.026 22 N -0.936 5.936 23 Si 1.048 2.952 24 H -0.255 1.255 25 H -0.242 1.242 26 H -0.307 1.307 27 C 0.150 3.850 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.078 0.922 40 H 0.407 0.593 41 H 0.132 0.868 42 H 0.184 0.816 43 H 0.201 0.799 44 H 0.153 0.847 45 H 0.246 0.754 46 H 0.032 0.968 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.960 -0.498 -8.279 11.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C -0.190 4.190 4 C -0.128 4.128 5 C -0.164 4.164 6 C 0.045 3.955 7 H 0.069 0.931 8 C 0.018 3.982 9 N -0.327 5.327 10 C 0.330 3.670 11 O -0.466 6.466 12 C -0.111 4.111 13 C -0.168 4.168 14 C -0.062 4.062 15 N -0.191 5.191 16 C -0.058 4.058 17 C -0.145 4.145 18 N -0.330 5.330 19 C -0.446 4.446 20 H 0.016 0.984 21 C -0.225 4.225 22 N -0.574 5.574 23 Si 0.873 3.127 24 H -0.181 1.181 25 H -0.166 1.166 26 H -0.235 1.235 27 C 0.026 3.974 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.245 0.755 41 H 0.150 0.850 42 H 0.201 0.799 43 H 0.218 0.782 44 H 0.171 0.829 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.859 -1.129 -6.940 11.310 hybrid contribution -2.196 0.667 -1.043 2.521 sum 6.663 -0.462 -7.983 10.409 Atomic orbital electron populations 1.21638 0.95618 1.00487 0.99917 1.21039 0.95332 0.95780 0.96531 1.21763 1.01176 0.94365 1.01732 1.21404 1.00390 0.94345 0.96704 1.22007 1.00540 0.96717 0.97126 1.21206 0.96671 0.88961 0.88669 0.93061 1.21277 0.97972 0.92551 0.86353 1.45894 1.45933 1.13645 1.27221 1.18518 0.81189 0.82146 0.85132 1.90660 1.36563 1.68458 1.50884 1.20509 0.98453 0.96376 0.95740 1.22634 0.97109 1.01131 0.95910 1.23064 0.98009 0.90270 0.94828 1.67639 1.10817 1.10268 1.30388 1.23340 0.92138 1.01134 0.89202 1.22470 0.99651 0.93356 0.99010 1.44319 1.65859 1.05636 1.17141 1.19298 1.00465 1.36277 0.88573 0.98352 1.27546 1.07776 0.95470 0.91727 1.71013 1.05242 1.48426 1.32675 0.84152 0.73314 0.79210 0.76064 1.18130 1.16638 1.23495 1.21473 0.96576 0.83824 0.95542 0.95242 0.92167 0.94416 0.91958 0.91399 0.93612 0.90739 0.91393 0.93039 0.90035 0.94705 0.90409 0.75534 0.85044 0.79946 0.78242 0.82912 0.94474 0.94950 0.94548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 7.99 71.98 0.57 -3.26 16 2 C -0.09 -2.50 0.77 -52.11 -0.04 -2.54 16 3 C -0.13 -3.15 8.48 71.98 0.61 -2.54 16 4 C -0.09 -2.26 4.71 30.62 0.14 -2.12 16 5 C -0.12 -3.49 5.05 30.82 0.16 -3.34 16 6 C 0.15 5.14 3.03 45.12 0.14 5.28 16 7 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 8 C 0.14 5.36 4.55 86.38 0.39 5.75 16 9 N -0.68 -27.46 4.13 -465.70 -1.92 -29.38 16 10 C 0.54 22.81 7.80 86.88 0.68 23.49 16 11 O -0.58 -26.77 16.45 -3.78 -0.06 -26.83 16 12 C -0.10 -3.72 5.91 -19.88 -0.12 -3.84 16 13 C -0.15 -5.23 9.62 22.63 0.22 -5.01 16 14 C 0.09 2.93 11.17 84.67 0.95 3.88 16 15 N -0.48 -14.50 10.33 -196.01 -2.03 -16.52 16 16 C 0.10 2.64 11.17 84.67 0.95 3.58 16 17 C -0.12 -3.89 9.68 22.63 0.22 -3.67 16 18 N -0.60 -24.55 1.59 -674.41 -1.08 -25.62 16 19 C -0.32 -15.78 6.26 84.03 0.53 -15.25 16 20 H 0.00 -0.06 7.41 -2.91 -0.02 -0.08 16 21 C -0.03 -1.33 5.03 84.86 0.43 -0.90 16 22 N -0.94 -54.72 13.71 21.65 0.30 -54.42 16 23 Si 1.05 44.30 26.06 68.60 1.79 46.09 16 24 H -0.26 -9.34 5.51 99.48 0.55 -8.80 16 25 H -0.24 -9.15 4.87 99.48 0.48 -8.66 16 26 H -0.31 -13.98 7.11 99.48 0.71 -13.28 16 27 C 0.15 5.58 3.30 86.36 0.29 5.86 16 28 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.42 5.97 -2.39 -0.01 1.40 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.05 1.62 6.33 -2.39 -0.02 1.61 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.03 1.53 7.55 -2.39 -0.02 1.52 16 39 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.41 16.47 4.10 -92.70 -0.38 16.09 16 41 H 0.13 4.86 4.02 -2.91 -0.01 4.84 16 42 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 43 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 44 H 0.15 4.43 7.74 -2.91 -0.02 4.41 16 45 H 0.25 15.13 8.73 -92.71 -0.81 14.32 16 46 H 0.03 1.38 7.67 -2.39 -0.02 1.36 16 47 H 0.04 1.30 6.43 -2.39 -0.02 1.29 16 Total: -1.00 -65.00 357.78 3.27 -61.72 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: 0.17 Total: 39.60 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.10 Total: 5.37 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -4.73 Total: -125.95 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.06 Total: -26.83 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.79 Total: 46.09 kcal Total: -65.00 3.27 -61.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089600497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.565 kcal (2) G-P(sol) polarization free energy of solvation -64.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds