Wall clock time and date at job start Tue Mar 31 2020 11:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.54093 * 112.58800 * 2 1 4 4 N 1.48335 * 104.50422 * 97.42189 * 3 2 1 5 5 C 1.36935 * 128.19746 * 221.81578 * 4 3 2 6 6 H 1.08000 * 120.00024 * 15.58086 * 5 4 3 7 7 C 1.38811 * 120.00051 * 195.30453 * 5 4 3 8 8 N 1.31628 * 119.99855 * 9.59201 * 7 5 4 9 9 Si 1.86796 * 120.00167 * 189.58959 * 7 5 4 10 10 H 1.48499 * 109.47184 * 94.80465 * 9 7 5 11 11 H 1.48499 * 109.47256 * 214.80249 * 9 7 5 12 12 H 1.48493 * 109.47202 * 334.80483 * 9 7 5 13 13 C 1.48339 * 103.60037 * 41.55240 * 4 3 2 14 14 C 1.54446 * 104.32434 * 318.41478 * 13 4 3 15 15 H 1.09000 * 112.29932 * 263.01771 * 14 13 4 16 16 C 1.53744 * 109.01390 * 137.36278 * 14 13 4 17 17 N 1.47197 * 106.42834 * 229.45436 * 16 14 13 18 18 C 1.34775 * 126.70384 * 211.36715 * 17 16 14 19 19 O 1.21281 * 120.00069 * 179.97438 * 18 17 16 20 20 C 1.50702 * 120.00083 * 0.02562 * 18 17 16 21 21 C 1.52994 * 109.47176 * 179.97438 * 20 18 17 22 22 N 1.46501 * 109.46986 * 180.02562 * 21 20 18 23 23 C 1.36343 * 125.63636 * 269.69381 * 22 21 20 24 24 C 1.34849 * 108.21978 * 179.83164 * 23 22 21 25 25 C 1.40893 * 107.41720 * 0.42364 * 24 23 22 26 26 C 1.34849 * 107.41753 * 359.73945 * 25 24 23 27 27 C 1.47196 * 106.59097 * 31.37173 * 17 16 14 28 28 H 1.09006 * 109.47482 * 302.10951 * 1 2 3 29 29 H 1.09003 * 109.47193 * 62.11130 * 1 2 3 30 30 H 1.09006 * 109.47256 * 182.10712 * 1 2 3 31 31 H 1.08998 * 110.40051 * 338.63787 * 3 2 1 32 32 H 1.09003 * 110.34787 * 216.17842 * 3 2 1 33 33 H 0.96994 * 119.99502 * 180.02562 * 8 7 5 34 34 H 1.08999 * 110.46176 * 77.12903 * 13 4 3 35 35 H 1.09004 * 110.45640 * 199.70681 * 13 4 3 36 36 H 1.08998 * 110.05911 * 348.69537 * 16 14 13 37 37 H 1.09001 * 110.06459 * 110.21235 * 16 14 13 38 38 H 1.08994 * 109.46947 * 299.99863 * 20 18 17 39 39 H 1.09002 * 109.46953 * 59.99714 * 20 18 17 40 40 H 1.09002 * 109.47128 * 299.99706 * 21 20 18 41 41 H 1.08994 * 109.47237 * 59.99850 * 21 20 18 42 42 H 1.07998 * 125.88921 * 359.95934 * 23 22 21 43 43 H 1.07993 * 126.29624 * 180.15720 * 24 23 22 44 44 H 1.08005 * 126.29611 * 179.73720 * 25 24 23 45 45 H 1.08004 * 125.89364 * 180.02562 * 26 25 24 46 46 H 1.09004 * 110.05883 * 209.38333 * 27 17 16 47 47 H 1.09003 * 110.10905 * 87.89822 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1218 1.4227 0.0000 4 7 2.4358 1.6945 1.4240 5 6 2.2324 2.8498 2.1304 6 1 1.5755 3.6130 1.7399 7 6 2.8660 3.0376 3.3512 8 7 3.8028 2.1997 3.7422 9 14 2.3892 4.4794 4.4389 10 1 1.3754 4.0377 5.4300 11 1 3.5918 4.9811 5.1511 12 1 1.8214 5.5655 3.6005 13 6 3.0162 0.4163 1.9033 14 6 2.1221 -0.6713 1.2684 15 1 1.3493 -1.0224 1.9521 16 6 3.0132 -1.8093 0.7444 17 7 2.5822 -2.0726 -0.6382 18 6 2.6116 -3.2578 -1.2792 19 8 2.2237 -3.3370 -2.4256 20 6 3.1253 -4.4850 -0.5711 21 6 3.0509 -5.6869 -1.5148 22 7 3.5498 -6.8799 -0.8262 23 6 4.8435 -7.3101 -0.8186 24 6 4.9096 -8.4347 -0.0775 25 6 3.6072 -8.7145 0.3814 26 6 2.7959 -7.7469 -0.0919 27 6 2.1130 -0.7886 -1.1839 28 1 -0.3634 0.5463 0.8705 29 1 -0.3634 0.4807 -0.9083 30 1 -0.3634 -1.0270 0.0378 31 1 1.3893 2.1390 -0.3721 32 1 3.0291 1.4558 -0.6033 33 1 4.2452 2.3307 4.5954 34 1 4.0453 0.3123 1.5593 35 1 2.9696 0.3608 2.9910 36 1 4.0589 -1.5019 0.7581 37 1 2.8773 -2.7020 1.3550 38 1 4.1599 -4.3235 -0.2687 39 1 2.5147 -4.6777 0.3111 40 1 2.0161 -5.8483 -1.8168 41 1 3.6611 -5.4944 -2.3971 42 1 5.6728 -6.8314 -1.3181 43 1 5.7968 -9.0167 0.1234 44 1 3.3126 -9.5503 0.9988 45 1 1.7325 -7.6714 0.0812 46 1 1.3417 -0.9610 -1.9346 47 1 2.9467 -0.2413 -1.6237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092133921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:06 Heat of formation + Delta-G solvation = 48.188676 kcal Electronic energy + Delta-G solvation = -26663.506544 eV Core-core repulsion = 23040.969193 eV Total energy + Delta-G solvation = -3622.537351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28912 -40.36244 -38.57881 -35.10638 -34.21719 -32.81146 -31.03429 -30.14655 -29.69703 -28.90560 -26.78702 -25.86267 -25.22126 -23.95617 -22.31661 -20.60318 -20.58394 -20.07996 -19.25785 -18.54092 -17.80622 -16.79547 -16.46858 -16.08463 -15.67332 -15.01681 -14.66412 -14.46664 -14.32899 -13.95407 -13.72439 -13.49677 -13.23496 -13.15896 -12.85028 -12.49329 -12.40799 -12.28696 -12.18559 -12.16652 -11.75712 -11.70726 -11.50201 -11.40183 -11.06629 -10.89394 -10.72568 -10.29610 -10.17528 -10.07915 -9.90509 -9.76840 -9.72751 -8.76630 -8.75738 -8.60034 -8.29814 -6.94267 -5.86638 -3.21206 2.11601 2.53647 2.64012 2.93673 3.16409 3.33325 3.39468 3.41034 4.38791 4.40764 4.46118 4.53049 4.80260 4.87736 4.97696 5.07539 5.08839 5.13392 5.20217 5.38792 5.41643 5.47499 5.52269 5.53020 5.55395 5.59360 5.64514 5.85412 5.96693 5.99930 6.05171 6.15355 6.18631 6.21162 6.27761 6.34923 6.47520 6.59376 6.67186 6.81215 6.86008 7.10173 7.19809 7.22837 7.42680 7.57744 7.63274 8.07379 8.12034 9.02848 9.66174 10.43590 11.27252 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.002697 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.223833 B =10380.106969 C =11257.691327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 C 0.137 3.863 4 N -0.592 5.592 5 C -0.225 4.225 6 H 0.077 0.923 7 C -0.005 4.005 8 N -0.915 5.915 9 Si 0.912 3.088 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.162 3.838 14 C -0.117 4.117 15 H 0.083 0.917 16 C 0.105 3.895 17 N -0.610 5.610 18 C 0.534 3.466 19 O -0.553 6.553 20 C -0.153 4.153 21 C 0.122 3.878 22 N -0.448 5.448 23 C -0.015 4.015 24 C -0.204 4.204 25 C -0.204 4.204 26 C -0.016 4.016 27 C 0.117 3.883 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.254 0.746 34 H 0.025 0.975 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.159 0.841 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.159 0.841 46 H 0.075 0.925 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -16.215 -7.530 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.089 4.089 3 C 0.010 3.990 4 N -0.315 5.315 5 C -0.353 4.353 6 H 0.094 0.906 7 C -0.202 4.202 8 N -0.561 5.561 9 Si 0.742 3.258 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.205 1.205 13 C 0.035 3.965 14 C -0.138 4.138 15 H 0.102 0.898 16 C -0.018 4.018 17 N -0.342 5.342 18 C 0.322 3.678 19 O -0.432 6.432 20 C -0.193 4.193 21 C 0.000 4.000 22 N -0.123 5.123 23 C -0.145 4.145 24 C -0.229 4.229 25 C -0.229 4.229 26 C -0.146 4.146 27 C -0.006 4.006 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.177 0.823 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.177 0.823 46 H 0.093 0.907 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.586 -15.857 -8.137 17.894 hybrid contribution -0.067 0.750 0.776 1.082 sum -1.653 -15.107 -7.361 16.886 Atomic orbital electron populations 1.21583 0.93438 1.00733 1.01945 1.22321 0.95726 0.97435 0.93464 1.21794 0.96654 0.92005 0.88594 1.45035 1.72445 1.09895 1.04146 1.18996 1.21445 0.94164 1.00684 0.90570 1.24879 0.97197 0.98840 0.99318 1.69876 1.25936 1.38345 1.21989 0.86108 0.77439 0.81675 0.80589 1.21548 1.21685 1.20508 1.21760 0.92000 0.82261 1.00446 1.23273 0.98431 0.95530 0.96607 0.89826 1.22372 0.99375 0.98946 0.81095 1.48661 1.62473 1.08002 1.15101 1.19916 0.78488 0.83209 0.86221 1.90704 1.49407 1.85376 1.17718 1.21976 1.04380 0.92712 1.00277 1.21547 1.02320 0.81733 0.94381 1.44216 1.07746 1.20434 1.39940 1.21870 0.86558 0.99383 1.06705 1.20899 0.97914 0.99343 1.04722 1.20900 0.93586 1.01476 1.06909 1.21865 0.97575 0.93700 1.01418 1.22208 0.99006 0.82867 0.96501 0.91665 0.93010 0.93553 0.93137 0.95517 0.93571 0.95755 0.89157 0.90599 0.91147 0.88138 0.88184 0.88478 0.88442 0.82318 0.84904 0.84910 0.82343 0.90702 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.59 37.15 0.32 -1.45 16 2 C -0.09 -1.40 1.08 -152.37 -0.16 -1.56 16 3 C 0.14 2.63 6.38 -2.46 -0.02 2.61 16 4 N -0.59 -14.06 3.38 -168.69 -0.57 -14.63 16 5 C -0.22 -5.94 10.37 -15.06 -0.16 -6.09 16 6 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 7 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16 8 N -0.92 -25.55 10.88 55.49 0.60 -24.95 16 9 Si 0.91 21.21 29.56 -169.99 -5.03 16.18 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.16 3.49 5.50 -2.27 -0.01 3.48 16 14 C -0.12 -1.96 3.74 -88.29 -0.33 -2.29 16 15 H 0.08 1.39 7.93 -51.93 -0.41 0.98 16 16 C 0.10 1.44 6.38 -3.27 -0.02 1.42 16 17 N -0.61 -8.51 3.32 -171.65 -0.57 -9.08 16 18 C 0.53 7.11 7.88 -10.99 -0.09 7.02 16 19 O -0.55 -8.93 16.21 5.56 0.09 -8.84 16 20 C -0.15 -1.51 5.00 -27.89 -0.14 -1.65 16 21 C 0.12 1.15 5.38 -4.04 -0.02 1.13 16 22 N -0.45 -4.47 2.75 -117.13 -0.32 -4.79 16 23 C -0.02 -0.15 11.43 -16.75 -0.19 -0.35 16 24 C -0.20 -2.09 10.86 -39.78 -0.43 -2.53 16 25 C -0.20 -2.09 10.86 -39.78 -0.43 -2.52 16 26 C -0.02 -0.16 11.43 -16.75 -0.19 -0.35 16 27 C 0.12 1.73 6.21 -3.28 -0.02 1.71 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 32 H 0.03 0.52 7.16 -51.93 -0.37 0.15 16 33 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.02 0.55 7.17 -51.93 -0.37 0.18 16 35 H 0.09 2.22 6.44 -51.93 -0.33 1.89 16 36 H 0.08 1.08 7.10 -51.93 -0.37 0.71 16 37 H 0.07 0.82 7.31 -51.93 -0.38 0.44 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 0.92 7.86 -51.93 -0.41 0.51 16 40 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.16 1.23 8.06 -52.48 -0.42 0.80 16 46 H 0.07 1.11 7.61 -51.93 -0.40 0.71 16 47 H 0.07 1.05 7.10 -51.93 -0.37 0.68 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -30.50 374.67 -9.73 -40.23 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.59 Total: 1.86 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.99 Total: -1.63 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.86 Total: -53.45 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.50 -9.73 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092133921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.419 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds