Wall clock time and date at job start Tue Mar 31 2020 11:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38679 * 119.27584 * 2 1 4 4 C 1.38006 * 119.62834 * 179.72270 * 3 2 1 5 5 C 1.41004 * 118.27954 * 359.97438 * 4 3 2 6 6 C 1.41016 * 120.70799 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00616 * 204.90191 * 6 5 4 8 8 C 1.39952 * 119.99690 * 24.89755 * 6 5 4 9 9 N 1.30861 * 119.99977 * 14.50903 * 8 6 5 10 10 Si 1.86802 * 120.00094 * 194.50791 * 8 6 5 11 11 H 1.48498 * 109.46840 * 59.99873 * 10 8 6 12 12 H 1.48498 * 109.47122 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47035 * 300.00434 * 10 8 6 14 14 C 1.41708 * 118.59184 * 0.02562 * 5 4 3 15 15 N 1.38084 * 119.91065 * 179.97438 * 14 5 4 16 16 C 1.46499 * 120.00496 * 180.02562 * 15 14 5 17 17 C 1.53002 * 109.47399 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46867 * 179.97438 * 17 16 15 19 19 H 1.08998 * 110.49060 * 305.69607 * 18 17 16 20 20 C 1.54986 * 110.55227 * 68.40736 * 18 17 16 21 21 C 1.55304 * 102.00253 * 139.40952 * 20 18 17 22 22 O 1.44567 * 103.73255 * 323.56220 * 21 20 18 23 23 C 1.42970 * 106.78953 * 39.11215 * 22 21 20 24 24 C 1.53212 * 115.36124 * 104.65069 * 23 22 21 25 25 N 1.48099 * 85.96718 * 93.38078 * 24 23 22 26 26 C 1.48089 * 90.88126 * 24.17034 * 25 24 23 27 27 N 1.31968 * 119.27539 * 179.73080 * 2 1 3 28 28 H 1.08998 * 109.47327 * 89.99867 * 1 2 3 29 29 H 1.09005 * 109.46984 * 209.99675 * 1 2 3 30 30 H 1.09000 * 109.47261 * 330.00034 * 1 2 3 31 31 H 1.07999 * 120.18700 * 359.74582 * 3 2 1 32 32 H 1.08000 * 120.86435 * 179.97438 * 4 3 2 33 33 H 0.96996 * 120.00427 * 180.02562 * 9 8 6 34 34 H 0.97001 * 119.99591 * 359.97438 * 15 14 5 35 35 H 1.09006 * 109.46815 * 299.99895 * 16 15 14 36 36 H 1.09002 * 109.47184 * 59.99796 * 16 15 14 37 37 H 1.08992 * 109.47094 * 300.00001 * 17 16 15 38 38 H 1.09002 * 109.46925 * 59.99875 * 17 16 15 39 39 H 1.08999 * 110.87210 * 257.65149 * 20 18 17 40 40 H 1.08995 * 110.87159 * 21.33335 * 20 18 17 41 41 H 1.08997 * 110.61487 * 204.96296 * 21 20 18 42 42 H 1.08996 * 110.61220 * 82.16256 * 21 20 18 43 43 H 1.09004 * 113.79276 * 207.64686 * 24 23 22 44 44 H 1.09001 * 113.79389 * 339.11653 * 24 23 22 45 45 H 1.00903 * 110.99745 * 271.22902 * 25 24 23 46 46 H 1.09000 * 113.79486 * 221.57182 * 26 25 24 47 47 H 1.09004 * 113.79888 * 90.09753 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 0.0058 5 6 4.2409 -0.0194 0.0121 6 6 5.6501 -0.0705 0.0177 7 1 6.1606 -0.9390 -0.3715 8 6 6.3872 1.0044 0.5275 9 7 5.7941 1.9206 1.2495 10 14 8.2177 1.1312 0.1775 11 1 8.4369 1.2095 -1.2892 12 1 8.7622 2.3513 0.8257 13 1 8.9092 -0.0666 0.7181 14 6 3.4737 -1.2109 0.0117 15 7 4.1073 -2.4378 0.0173 16 6 3.3162 -3.6709 0.0163 17 6 4.2549 -4.8791 0.0226 18 6 3.4287 -6.1668 0.0222 19 1 2.7180 -6.1643 0.8486 20 6 2.6906 -6.3392 -1.3297 21 6 2.8523 -7.8610 -1.5941 22 8 4.1758 -8.1575 -1.0937 23 6 4.3451 -7.3948 0.1036 24 6 4.2465 -8.1914 1.4086 25 7 5.7196 -8.3169 1.3210 26 6 5.7972 -7.0941 0.4894 27 7 2.1524 -1.1511 0.0054 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6365 2.1399 -0.0041 32 1 4.1135 2.1486 0.0055 33 1 6.3048 2.6658 1.6026 34 1 5.0762 -2.4832 0.0211 35 1 2.6835 -3.6973 0.9035 36 1 2.6917 -3.7011 -0.8766 37 1 4.8873 -4.8524 -0.8647 38 1 4.8798 -4.8490 0.9152 39 1 1.6389 -6.0687 -1.2353 40 1 3.1739 -5.7557 -2.1132 41 1 2.7894 -8.0739 -2.6613 42 1 2.0996 -8.4278 -1.0464 43 1 3.9052 -7.6013 2.2592 44 1 3.7175 -9.1389 1.3065 45 1 5.9819 -9.1332 0.7891 46 1 6.4981 -7.1713 -0.3418 47 1 5.9182 -6.1769 1.0660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155479328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:54 Heat of formation + Delta-G solvation = 18.058093 kcal Electronic energy + Delta-G solvation = -26631.083297 eV Core-core repulsion = 23007.239386 eV Total energy + Delta-G solvation = -3623.843911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14977 -38.59354 -37.10461 -35.79098 -34.15571 -33.37644 -30.87916 -30.21330 -29.13483 -27.87993 -26.96497 -26.29228 -24.14244 -23.71243 -22.75466 -21.07254 -20.72527 -20.31138 -19.50342 -17.22995 -16.87748 -16.64621 -16.11566 -15.66953 -15.37417 -15.08459 -14.77639 -14.58283 -13.90738 -13.85372 -13.76950 -13.33978 -13.22268 -13.03205 -12.72028 -12.51929 -12.17229 -12.01944 -11.74234 -11.68972 -11.56900 -11.43551 -11.41153 -11.24904 -11.14282 -10.84883 -10.74815 -10.71212 -10.60906 -10.47561 -9.88465 -9.76747 -9.26975 -8.83703 -8.72803 -8.06925 -7.85743 -6.78281 -6.48168 -4.21660 2.72938 3.05604 3.07155 3.11951 3.24004 3.33847 3.85630 3.91999 4.02840 4.37840 4.49184 4.58466 4.67839 4.81690 4.97022 5.06615 5.18542 5.26799 5.37784 5.41287 5.45328 5.51189 5.59907 5.64232 5.72267 5.76372 5.80624 5.84568 5.89585 5.90187 6.07733 6.14072 6.40320 6.42948 6.45443 6.46452 6.57607 6.64854 6.82409 6.96031 7.09587 7.13215 7.23361 7.67749 7.79971 8.01750 8.29806 8.53568 8.66776 8.79778 9.00945 9.80143 10.21713 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.003597 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.173599 B = 7782.002252 C = 9660.787422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.025 3.975 3 C -0.187 4.187 4 C -0.123 4.123 5 C 0.028 3.972 6 C -0.455 4.455 7 H 0.073 0.927 8 C 0.075 3.925 9 N -0.800 5.800 10 Si 0.907 3.093 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.266 1.266 14 C 0.308 3.692 15 N -0.731 5.731 16 C 0.149 3.851 17 C -0.124 4.124 18 C -0.102 4.102 19 H 0.089 0.911 20 C -0.150 4.150 21 C 0.046 3.954 22 O -0.357 6.357 23 C 0.041 3.959 24 C 0.007 3.993 25 N -0.657 5.657 26 C 0.024 3.976 27 N -0.529 5.529 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.280 0.720 34 H 0.402 0.598 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.338 0.662 46 H 0.080 0.920 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 -14.597 -2.532 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C -0.209 4.209 4 C -0.149 4.149 5 C 0.021 3.979 6 C -0.486 4.486 7 H 0.091 0.909 8 C -0.142 4.142 9 N -0.427 5.427 10 Si 0.732 3.268 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.191 1.191 14 C 0.070 3.930 15 N -0.371 5.371 16 C 0.024 3.976 17 C -0.161 4.161 18 C -0.122 4.122 19 H 0.107 0.893 20 C -0.188 4.188 21 C -0.030 4.030 22 O -0.276 6.276 23 C -0.001 4.001 24 C -0.123 4.123 25 N -0.283 5.283 26 C -0.105 4.105 27 N -0.247 5.247 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.238 0.762 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.153 0.847 46 H 0.098 0.902 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.160 -15.189 -1.709 15.608 hybrid contribution 1.069 0.861 -0.964 1.677 sum -2.090 -14.329 -2.673 14.725 Atomic orbital electron populations 1.20283 0.91883 1.00710 1.00235 1.19955 0.94248 0.88047 1.08659 1.21232 0.95412 0.96613 1.07688 1.21404 0.92088 0.98360 1.03087 1.17918 0.93879 0.90122 0.95931 1.19102 0.90788 1.02516 1.36227 0.90865 1.25799 1.00765 0.94889 0.92748 1.69785 1.38351 1.10334 1.24219 0.86380 0.82210 0.78493 0.79696 1.19002 1.20408 1.19105 1.18414 0.87906 0.85563 1.01134 1.43682 1.07400 1.01348 1.84695 1.20852 0.93133 0.83006 1.00657 1.21919 0.98442 0.93002 1.02764 1.22316 0.97115 0.94259 0.98538 0.89317 1.23314 1.01857 0.96014 0.97573 1.23684 0.84339 0.95176 0.99793 1.88724 1.33508 1.66457 1.38875 1.24652 0.97419 0.91326 0.86683 1.24171 0.90835 1.00546 0.96772 1.65127 1.13356 1.04951 1.44881 1.24064 0.93840 0.96237 0.96396 1.66338 1.08380 1.29811 1.20213 0.93310 0.92843 0.92923 0.88826 0.85455 0.90942 0.76179 0.93476 0.93391 0.91225 0.90840 0.89781 0.89988 0.88913 0.92153 0.87568 0.90634 0.84726 0.90182 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.15 36.01 0.37 -0.97 16 2 C 0.03 0.59 6.79 -82.37 -0.56 0.03 16 3 C -0.19 -4.45 9.69 -39.50 -0.38 -4.83 16 4 C -0.12 -3.20 8.79 -38.62 -0.34 -3.54 16 5 C 0.03 0.74 5.60 -106.47 -0.60 0.15 16 6 C -0.45 -11.48 8.54 -37.89 -0.32 -11.80 16 7 H 0.07 1.73 6.67 -52.48 -0.35 1.38 16 8 C 0.07 1.82 5.23 -17.32 -0.09 1.73 16 9 N -0.80 -20.37 10.83 55.55 0.60 -19.77 16 10 Si 0.91 18.27 29.58 -169.99 -5.03 13.24 16 11 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 12 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 14 C 0.31 7.49 7.52 -155.03 -1.17 6.32 16 15 N -0.73 -14.77 5.61 -59.97 -0.34 -15.11 16 16 C 0.15 2.43 5.54 -4.04 -0.02 2.41 16 17 C -0.12 -1.53 3.73 -26.73 -0.10 -1.63 16 18 C -0.10 -1.08 2.78 -89.34 -0.25 -1.33 16 19 H 0.09 0.91 7.89 -51.93 -0.41 0.50 16 20 C -0.15 -1.49 5.98 -24.46 -0.15 -1.63 16 21 C 0.05 0.42 7.73 38.38 0.30 0.72 16 22 O -0.36 -4.04 11.29 -35.23 -0.40 -4.43 16 23 C 0.04 0.42 1.47 -90.25 -0.13 0.29 16 24 C 0.01 0.07 8.31 -3.06 -0.03 0.04 16 25 N -0.66 -7.02 8.55 -120.21 -1.03 -8.05 16 26 C 0.02 0.26 7.58 -3.05 -0.02 0.23 16 27 N -0.53 -12.73 9.44 -8.11 -0.08 -12.80 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.13 3.39 6.17 -52.49 -0.32 3.07 16 33 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 34 H 0.40 7.79 6.67 -40.82 -0.27 7.51 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 37 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 38 H 0.07 0.89 6.20 -51.93 -0.32 0.57 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.89 7.80 -51.93 -0.41 0.48 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.11 1.00 8.07 -51.93 -0.42 0.58 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.34 3.34 8.89 -39.29 -0.35 2.99 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.12 1.26 5.85 -51.93 -0.30 0.96 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -28.77 371.42 -11.49 -40.26 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -7.32 Total: 14.89 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -3.49 Total: -13.82 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.84 Total: -55.74 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.40 Total: -4.43 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.77 -11.49 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155479328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.317 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds