Wall clock time and date at job start Tue Mar 31 2020 11:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38679 * 119.27584 * 2 1 4 4 C 1.38006 * 119.62834 * 179.72270 * 3 2 1 5 5 C 1.41004 * 118.27954 * 359.97438 * 4 3 2 6 6 C 1.41016 * 120.70799 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00616 * 204.90191 * 6 5 4 8 8 C 1.39952 * 119.99690 * 24.89755 * 6 5 4 9 9 N 1.30861 * 119.99977 * 14.50903 * 8 6 5 10 10 Si 1.86802 * 120.00094 * 194.50791 * 8 6 5 11 11 H 1.48498 * 109.46840 * 59.99873 * 10 8 6 12 12 H 1.48498 * 109.47122 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47035 * 300.00434 * 10 8 6 14 14 C 1.41708 * 118.59184 * 0.02562 * 5 4 3 15 15 N 1.38084 * 119.91065 * 179.97438 * 14 5 4 16 16 C 1.46499 * 120.00496 * 180.02562 * 15 14 5 17 17 C 1.53002 * 109.47399 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46867 * 179.97438 * 17 16 15 19 19 H 1.08998 * 110.49060 * 305.69607 * 18 17 16 20 20 C 1.54986 * 110.55227 * 68.40736 * 18 17 16 21 21 C 1.55304 * 102.00253 * 139.40952 * 20 18 17 22 22 O 1.44567 * 103.73255 * 323.56220 * 21 20 18 23 23 C 1.42970 * 106.78953 * 39.11215 * 22 21 20 24 24 C 1.53212 * 115.36124 * 104.65069 * 23 22 21 25 25 N 1.48099 * 85.96718 * 93.38078 * 24 23 22 26 26 C 1.48089 * 90.88126 * 24.17034 * 25 24 23 27 27 N 1.31968 * 119.27539 * 179.73080 * 2 1 3 28 28 H 1.08998 * 109.47327 * 89.99867 * 1 2 3 29 29 H 1.09005 * 109.46984 * 209.99675 * 1 2 3 30 30 H 1.09000 * 109.47261 * 330.00034 * 1 2 3 31 31 H 1.07999 * 120.18700 * 359.74582 * 3 2 1 32 32 H 1.08000 * 120.86435 * 179.97438 * 4 3 2 33 33 H 0.96996 * 120.00427 * 180.02562 * 9 8 6 34 34 H 0.97001 * 119.99591 * 359.97438 * 15 14 5 35 35 H 1.09006 * 109.46815 * 299.99895 * 16 15 14 36 36 H 1.09002 * 109.47184 * 59.99796 * 16 15 14 37 37 H 1.08992 * 109.47094 * 300.00001 * 17 16 15 38 38 H 1.09002 * 109.46925 * 59.99875 * 17 16 15 39 39 H 1.08999 * 110.87210 * 257.65149 * 20 18 17 40 40 H 1.08995 * 110.87159 * 21.33335 * 20 18 17 41 41 H 1.08997 * 110.61487 * 204.96296 * 21 20 18 42 42 H 1.08996 * 110.61220 * 82.16256 * 21 20 18 43 43 H 1.09004 * 113.79276 * 207.64686 * 24 23 22 44 44 H 1.09001 * 113.79389 * 339.11653 * 24 23 22 45 45 H 1.00903 * 110.99745 * 271.22902 * 25 24 23 46 46 H 1.09000 * 113.79486 * 221.57182 * 26 25 24 47 47 H 1.09004 * 113.79888 * 90.09753 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 0.0058 5 6 4.2409 -0.0194 0.0121 6 6 5.6501 -0.0705 0.0177 7 1 6.1606 -0.9390 -0.3715 8 6 6.3872 1.0044 0.5275 9 7 5.7941 1.9206 1.2495 10 14 8.2177 1.1312 0.1775 11 1 8.4369 1.2095 -1.2892 12 1 8.7622 2.3513 0.8257 13 1 8.9092 -0.0666 0.7181 14 6 3.4737 -1.2109 0.0117 15 7 4.1073 -2.4378 0.0173 16 6 3.3162 -3.6709 0.0163 17 6 4.2549 -4.8791 0.0226 18 6 3.4287 -6.1668 0.0222 19 1 2.7180 -6.1643 0.8486 20 6 2.6906 -6.3392 -1.3297 21 6 2.8523 -7.8610 -1.5941 22 8 4.1758 -8.1575 -1.0937 23 6 4.3451 -7.3948 0.1036 24 6 4.2465 -8.1914 1.4086 25 7 5.7196 -8.3169 1.3210 26 6 5.7972 -7.0941 0.4894 27 7 2.1524 -1.1511 0.0054 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6365 2.1399 -0.0041 32 1 4.1135 2.1486 0.0055 33 1 6.3048 2.6658 1.6026 34 1 5.0762 -2.4832 0.0211 35 1 2.6835 -3.6973 0.9035 36 1 2.6917 -3.7011 -0.8766 37 1 4.8873 -4.8524 -0.8647 38 1 4.8798 -4.8490 0.9152 39 1 1.6389 -6.0687 -1.2353 40 1 3.1739 -5.7557 -2.1132 41 1 2.7894 -8.0739 -2.6613 42 1 2.0996 -8.4278 -1.0464 43 1 3.9052 -7.6013 2.2592 44 1 3.7175 -9.1389 1.3065 45 1 5.9819 -9.1332 0.7891 46 1 6.4981 -7.1713 -0.3418 47 1 5.9182 -6.1769 1.0660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155479328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:53 Heat of formation + Delta-G solvation = -0.858078 kcal Electronic energy + Delta-G solvation = -26631.903564 eV Core-core repulsion = 23007.239386 eV Total energy + Delta-G solvation = -3624.664178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97360 -40.39873 -37.92881 -37.15157 -35.96985 -34.66168 -32.60313 -31.70972 -30.26461 -29.45414 -28.19772 -27.17658 -25.71537 -24.68686 -23.99952 -22.55347 -22.36774 -21.60378 -20.37989 -19.10787 -17.79328 -17.64371 -17.54786 -17.14876 -16.47959 -16.37909 -16.17540 -15.57023 -15.44526 -15.21707 -14.95501 -14.58746 -14.45066 -14.28557 -14.02581 -13.73678 -13.62108 -13.33389 -13.16972 -13.09994 -12.92971 -12.84255 -12.60800 -12.54721 -12.38022 -12.26185 -12.14082 -11.72373 -11.65478 -11.56856 -11.51310 -11.08147 -10.67274 -10.54026 -9.94360 -9.74150 -9.54367 -8.61051 -8.27327 -6.11389 0.93048 1.24383 1.40991 1.50717 1.55021 2.22994 2.56413 2.74230 2.84890 3.06995 3.34799 3.56051 3.77262 3.80054 3.92376 4.17279 4.20314 4.26397 4.31873 4.35957 4.46258 4.53177 4.57918 4.64238 4.68447 4.74210 4.74851 4.80603 4.84834 4.91405 4.97655 4.99526 5.01449 5.04688 5.07102 5.12645 5.19742 5.24734 5.27837 5.30354 5.45115 5.83494 5.86858 5.92393 6.15466 6.32222 6.44000 6.78999 6.87557 6.94158 7.17544 7.96188 8.41161 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.003597 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.173599 B = 7782.002252 C = 9660.787422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.021 3.979 3 C -0.202 4.202 4 C -0.147 4.147 5 C -0.006 4.006 6 C -0.479 4.479 7 H 0.081 0.919 8 C 0.033 3.967 9 N -0.835 5.835 10 Si 0.979 3.021 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.257 1.257 14 C 0.300 3.700 15 N -0.727 5.727 16 C 0.154 3.846 17 C -0.109 4.109 18 C -0.099 4.099 19 H 0.095 0.905 20 C -0.150 4.150 21 C 0.046 3.954 22 O -0.373 6.373 23 C 0.045 3.955 24 C 0.011 3.989 25 N -0.666 5.666 26 C 0.020 3.980 27 N -0.540 5.540 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.284 0.716 34 H 0.404 0.596 35 H 0.037 0.963 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.342 0.658 46 H 0.078 0.922 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -16.017 -2.728 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C -0.225 4.225 4 C -0.173 4.173 5 C -0.013 4.013 6 C -0.511 4.511 7 H 0.099 0.901 8 C -0.180 4.180 9 N -0.462 5.462 10 Si 0.801 3.199 11 H -0.188 1.188 12 H -0.199 1.199 13 H -0.182 1.182 14 C 0.061 3.939 15 N -0.366 5.366 16 C 0.030 3.970 17 C -0.147 4.147 18 C -0.119 4.119 19 H 0.114 0.886 20 C -0.187 4.187 21 C -0.029 4.029 22 O -0.292 6.292 23 C 0.004 3.996 24 C -0.119 4.119 25 N -0.293 5.293 26 C -0.110 4.110 27 N -0.259 5.259 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.240 0.760 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.157 0.843 46 H 0.097 0.903 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.519 -16.646 -1.907 17.120 hybrid contribution 1.069 1.273 -0.909 1.895 sum -2.451 -15.372 -2.816 15.819 Atomic orbital electron populations 1.20337 0.88246 1.02125 1.01850 1.20787 0.96742 0.87498 1.06320 1.21486 0.94833 0.98112 1.08042 1.21433 0.93260 0.97974 1.04669 1.18274 0.94832 0.90940 0.97298 1.19366 0.90942 1.03591 1.37152 0.90109 1.26642 1.05242 0.94155 0.91992 1.69866 1.40216 1.11011 1.25106 0.85282 0.76464 0.78761 0.79394 1.18790 1.19879 1.18161 1.18725 0.88287 0.86621 1.00277 1.43837 1.07800 1.01398 1.83560 1.20932 0.93458 0.82820 0.99791 1.21786 0.97808 0.92179 1.02934 1.22278 0.97081 0.93246 0.99296 0.88649 1.23302 1.02038 0.96706 0.96696 1.23817 0.83818 0.94504 1.00799 1.88711 1.34685 1.66629 1.39169 1.24592 0.96956 0.91158 0.86895 1.24199 0.90366 1.00988 0.96391 1.65123 1.14095 1.05086 1.45023 1.24067 0.94216 0.96263 0.96410 1.66517 1.08130 1.30242 1.21021 0.91454 0.92116 0.90825 0.86694 0.87113 0.90519 0.75966 0.94421 0.93932 0.91265 0.90481 0.89042 0.91141 0.87720 0.90650 0.87179 0.89625 0.84301 0.90315 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.32 10.15 71.24 0.72 -1.60 16 2 C 0.02 0.95 6.79 42.64 0.29 1.24 16 3 C -0.20 -9.69 9.69 22.32 0.22 -9.47 16 4 C -0.15 -7.87 8.79 22.89 0.20 -7.67 16 5 C -0.01 -0.35 5.60 -21.06 -0.12 -0.46 16 6 C -0.48 -24.72 8.54 23.37 0.20 -24.52 16 7 H 0.08 3.87 6.67 -2.91 -0.02 3.85 16 8 C 0.03 1.63 5.23 85.25 0.45 2.08 16 9 N -0.83 -43.59 10.83 21.83 0.24 -43.35 16 10 Si 0.98 37.63 29.58 68.60 2.03 39.65 16 11 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 12 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 13 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 14 C 0.30 14.77 7.52 134.05 1.01 15.78 16 15 N -0.73 -29.52 5.61 -343.64 -1.93 -31.45 16 16 C 0.15 4.97 5.54 86.38 0.48 5.45 16 17 C -0.11 -2.60 3.73 30.59 0.11 -2.49 16 18 C -0.10 -1.94 2.78 -9.96 -0.03 -1.96 16 19 H 0.10 1.77 7.89 -2.39 -0.02 1.75 16 20 C -0.15 -2.73 5.98 32.06 0.19 -2.53 16 21 C 0.05 0.74 7.73 72.77 0.56 1.31 16 22 O -0.37 -7.75 11.29 -148.98 -1.68 -9.43 16 23 C 0.05 0.87 1.47 -10.46 -0.02 0.85 16 24 C 0.01 0.19 8.31 86.14 0.72 0.90 16 25 N -0.67 -13.31 8.55 -538.90 -4.61 -17.92 16 26 C 0.02 0.40 7.58 86.15 0.65 1.06 16 27 N -0.54 -25.87 9.44 -179.57 -1.70 -27.57 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 31 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.11 6.18 6.17 -2.91 -0.02 6.16 16 33 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 34 H 0.40 15.77 6.67 -92.71 -0.62 15.15 16 35 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.04 1.43 7.56 -2.39 -0.02 1.41 16 37 H 0.07 1.67 8.03 -2.39 -0.02 1.65 16 38 H 0.08 1.80 6.20 -2.39 -0.01 1.79 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.45 7.80 -2.39 -0.02 1.43 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 1.85 8.07 -2.38 -0.02 1.84 16 44 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.34 6.29 8.89 -89.69 -0.80 5.49 16 46 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.12 2.35 5.85 -2.38 -0.01 2.34 16 Total: -1.00 -62.42 371.42 -2.43 -64.85 By element: Atomic # 1 Polarization: 47.69 SS G_CDS: -0.42 Total: 47.27 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 5.64 Total: -22.05 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -7.99 Total: -120.29 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -1.68 Total: -9.43 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.65 kcal Total: -62.42 -2.43 -64.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155479328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.992 kcal (2) G-P(sol) polarization free energy of solvation -62.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds