Wall clock time and date at job start Tue Mar 31 2020 12:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31491 * 119.81753 * 2 1 4 4 C 1.32739 * 121.73055 * 179.97438 * 3 2 1 5 5 N 1.38370 * 119.42920 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00350 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47367 * 179.97438 * 6 5 4 8 8 H 1.08992 * 109.97238 * 306.06093 * 7 6 5 9 9 O 1.43365 * 109.86681 * 67.11348 * 7 6 5 10 10 C 1.43992 * 109.97925 * 119.56150 * 9 7 6 11 11 C 1.53824 * 104.50130 * 23.53940 * 10 9 7 12 12 H 1.09000 * 109.07621 * 78.33674 * 11 10 9 13 13 C 1.50846 * 112.84599 * 200.44097 * 11 10 9 14 14 N 1.46649 * 111.81286 * 65.03941 * 13 11 10 15 15 C 1.47211 * 109.68003 * 60.74826 * 14 13 11 16 16 C 1.52648 * 108.37703 * 293.92107 * 15 14 13 17 17 C 1.53060 * 110.80047 * 61.55282 * 16 15 14 18 18 H 1.08997 * 112.25708 * 76.68668 * 17 16 15 19 19 C 1.39706 * 121.14293 * 0.25734 * 4 3 2 20 20 C 1.36563 * 119.49007 * 359.48390 * 19 4 3 21 21 C 1.40756 * 119.81815 * 179.97438 * 2 1 3 22 22 C 1.41197 * 120.56727 * 0.04437 * 21 2 1 23 23 H 1.08001 * 120.00290 * 24.87794 * 22 21 2 24 24 C 1.39877 * 120.00101 * 204.88032 * 22 21 2 25 25 N 1.30902 * 119.99634 * 14.68124 * 24 22 21 26 26 Si 1.86795 * 119.99997 * 194.67729 * 24 22 21 27 27 H 1.48495 * 109.47366 * 60.00087 * 26 24 22 28 28 H 1.48504 * 109.46908 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47401 * 299.99870 * 26 24 22 30 30 H 1.08996 * 109.47049 * 89.99939 * 1 2 3 31 31 H 1.09002 * 109.46954 * 209.99995 * 1 2 3 32 32 H 1.09004 * 109.46902 * 330.00015 * 1 2 3 33 33 H 0.97006 * 120.00127 * 0.02562 * 5 4 3 34 34 H 1.08998 * 109.46969 * 59.99891 * 6 5 4 35 35 H 1.08997 * 109.46840 * 299.99964 * 6 5 4 36 36 H 1.09002 * 110.43054 * 142.34235 * 10 9 7 37 37 H 1.09007 * 110.42975 * 264.70868 * 10 9 7 38 38 H 1.09006 * 108.99698 * 304.46910 * 13 11 10 39 39 H 1.08990 * 109.00174 * 185.62120 * 13 11 10 40 40 H 1.00903 * 110.99616 * 183.76756 * 14 13 11 41 41 H 1.08997 * 109.67891 * 53.63743 * 15 14 13 42 42 H 1.08996 * 109.67865 * 174.15827 * 15 14 13 43 43 H 1.08997 * 109.21009 * 181.89277 * 16 15 14 44 44 H 1.08999 * 109.21195 * 301.21112 * 16 15 14 45 45 H 1.07997 * 120.25816 * 179.72307 * 19 4 3 46 46 H 1.08002 * 120.79720 * 180.25022 * 20 19 4 47 47 H 0.96995 * 119.99776 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1851 0.0005 5 7 4.1267 2.4123 -0.0001 6 6 5.5903 2.4759 0.0011 7 6 6.0373 3.9392 -0.0005 8 1 5.5701 4.4703 -0.8297 9 8 5.6771 4.5600 1.2406 10 6 6.8583 5.0312 1.9159 11 6 7.8956 5.2147 0.7950 12 1 7.6889 6.1457 0.2672 13 6 9.3147 5.2264 1.3064 14 7 9.6963 3.9337 1.8843 15 6 9.6028 2.8841 0.8563 16 6 8.1358 2.7208 0.4673 17 6 7.5831 4.0187 -0.1266 18 1 7.9115 4.1751 -1.1541 19 6 4.2495 0.0142 -0.0043 20 6 3.6199 -1.1976 0.0011 21 6 2.2069 -1.2212 0.0005 22 6 1.5091 -2.4487 0.0002 23 1 0.5048 -2.4990 -0.3940 24 6 2.1185 -3.5998 0.5103 25 7 3.2000 -3.4987 1.2408 26 14 1.3890 -5.2810 0.1491 27 1 1.3680 -5.5067 -1.3184 28 1 2.2154 -6.3293 0.7999 29 1 0.0033 -5.3438 0.6795 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.6057 3.2306 -0.0004 34 1 5.9763 1.9775 -0.8882 35 1 5.9748 1.9791 0.8918 36 1 6.6598 5.9819 2.4109 37 1 7.2040 4.2919 2.6385 38 1 9.4103 5.9984 2.0700 39 1 9.9875 5.4586 0.4810 40 1 10.6248 3.9733 2.2772 41 1 10.1844 3.1745 -0.0186 42 1 9.9843 1.9444 1.2554 43 1 8.0469 1.9227 -0.2696 44 1 7.5573 2.4566 1.3526 45 1 5.3281 0.0670 -0.0083 46 1 4.1882 -2.1160 0.0016 47 1 3.6228 -4.2969 1.5942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155526128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:29 Heat of formation + Delta-G solvation = -10.582794 kcal Electronic energy + Delta-G solvation = -26788.914989 eV Core-core repulsion = 23163.829115 eV Total energy + Delta-G solvation = -3625.085873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84936 -38.53967 -36.94219 -35.27369 -33.65093 -32.56388 -31.75991 -30.95097 -30.20485 -28.31302 -26.78727 -25.31832 -24.66523 -23.97126 -22.92918 -21.17054 -20.78199 -19.53202 -19.30484 -17.46990 -17.14231 -16.57633 -16.14283 -15.56105 -15.25692 -15.01727 -14.77817 -14.50346 -14.01893 -13.77953 -13.61556 -13.57107 -13.14921 -12.99912 -12.84925 -12.44846 -12.36231 -12.13714 -11.92089 -11.69022 -11.51880 -11.35236 -11.23948 -11.10512 -11.04361 -10.77682 -10.74734 -10.50650 -10.45762 -10.41409 -9.61910 -9.46164 -9.28988 -8.80072 -8.51623 -8.05408 -7.89848 -6.70987 -6.47779 -4.09748 2.82276 3.05667 3.12029 3.15436 3.37566 3.66847 3.88969 4.01498 4.07815 4.23932 4.45389 4.67058 4.78840 4.82435 4.97493 5.03361 5.11183 5.17582 5.21534 5.27850 5.41794 5.46431 5.55228 5.61882 5.70245 5.76096 5.85212 5.88539 5.98484 6.03910 6.10480 6.33652 6.47209 6.59489 6.62152 6.64451 6.75816 6.88552 7.01103 7.03814 7.13567 7.30865 7.48760 7.57315 7.86723 7.99211 8.38418 8.54519 8.76973 8.93774 9.03231 9.84701 10.32752 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.002883 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.587864 B = 9708.605320 C =10711.763257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.038 3.962 3 N -0.523 5.523 4 C 0.290 3.710 5 N -0.740 5.740 6 C 0.136 3.864 7 C 0.075 3.925 8 H 0.081 0.919 9 O -0.371 6.371 10 C 0.061 3.939 11 C -0.117 4.117 12 H 0.082 0.918 13 C 0.070 3.930 14 N -0.682 5.682 15 C 0.054 3.946 16 C -0.123 4.123 17 C -0.107 4.107 18 H 0.095 0.905 19 C -0.211 4.211 20 C -0.090 4.090 21 C 0.030 3.970 22 C -0.453 4.453 23 H 0.078 0.922 24 C 0.072 3.928 25 N -0.810 5.810 26 Si 0.907 3.093 27 H -0.266 1.266 28 H -0.281 1.281 29 H -0.267 1.267 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.390 0.610 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.032 0.968 40 H 0.343 0.657 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.129 0.871 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.226 13.046 -1.171 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 N -0.239 5.239 4 C 0.057 3.943 5 N -0.379 5.379 6 C 0.010 3.990 7 C 0.017 3.983 8 H 0.098 0.902 9 O -0.290 6.290 10 C -0.015 4.015 11 C -0.136 4.136 12 H 0.100 0.900 13 C -0.059 4.059 14 N -0.313 5.313 15 C -0.075 4.075 16 C -0.160 4.160 17 C -0.126 4.126 18 H 0.113 0.887 19 C -0.235 4.235 20 C -0.117 4.117 21 C 0.025 3.975 22 C -0.485 4.485 23 H 0.096 0.904 24 C -0.143 4.143 25 N -0.437 5.437 26 Si 0.732 3.268 27 H -0.191 1.191 28 H -0.206 1.206 29 H -0.191 1.191 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.224 0.776 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.161 0.839 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.146 0.854 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.235 13.447 -0.674 18.879 hybrid contribution 1.194 -1.098 -0.721 1.775 sum 14.429 12.349 -1.395 19.043 Atomic orbital electron populations 1.20250 0.91291 1.01067 1.00179 1.20745 0.94660 0.87438 1.07194 1.66322 1.07414 1.31229 1.18977 1.17711 0.88210 0.85021 1.03367 1.43535 1.03382 1.04951 1.86023 1.21561 0.82302 0.94324 1.00843 1.23191 0.93763 0.93768 0.87600 0.90165 1.88581 1.29852 1.77030 1.33575 1.23212 0.84071 0.99578 0.94680 1.22011 0.95652 0.98849 0.97080 0.89961 1.21203 0.94691 0.91942 0.98097 1.60757 1.32297 1.04680 1.33602 1.22000 0.96954 0.95388 0.93205 1.21806 0.95611 0.96559 1.02040 1.22638 0.94732 0.95535 0.99684 0.88716 1.20777 0.98034 0.92939 1.11770 1.21324 0.94922 0.96188 0.99243 1.18145 0.92220 0.93031 0.94086 1.19301 1.01312 0.91985 1.35859 0.90358 1.25847 0.94530 1.01107 0.92837 1.69804 1.17888 1.31198 1.24800 0.86385 0.79764 0.80989 0.79622 1.19071 1.20567 1.19125 0.93478 0.91371 0.93433 0.77606 0.92594 0.92182 0.90341 0.90787 0.90529 0.94991 0.83901 0.94979 0.90359 0.90714 0.89708 0.88751 0.85351 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 9.58 36.00 0.34 -1.21 16 2 C 0.04 0.99 6.86 -81.79 -0.56 0.43 16 3 N -0.52 -13.43 10.29 -8.05 -0.08 -13.51 16 4 C 0.29 6.95 7.64 -155.13 -1.19 5.77 16 5 N -0.74 -14.58 5.68 -60.36 -0.34 -14.92 16 6 C 0.14 2.12 3.35 -4.04 -0.01 2.11 16 7 C 0.07 0.95 3.35 -25.51 -0.09 0.87 16 8 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 9 O -0.37 -5.36 11.02 -35.23 -0.39 -5.74 16 10 C 0.06 0.68 6.78 37.59 0.25 0.94 16 11 C -0.12 -1.04 2.96 -90.65 -0.27 -1.30 16 12 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 13 C 0.07 0.51 5.91 -5.04 -0.03 0.48 16 14 N -0.68 -5.42 6.55 -115.14 -0.75 -6.18 16 15 C 0.05 0.45 6.55 -3.83 -0.03 0.42 16 16 C -0.12 -1.24 3.83 -26.88 -0.10 -1.35 16 17 C -0.11 -1.04 3.62 -88.75 -0.32 -1.36 16 18 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.21 -5.11 9.24 -39.64 -0.37 -5.47 16 20 C -0.09 -2.39 8.73 -39.01 -0.34 -2.73 16 21 C 0.03 0.82 5.59 -106.65 -0.60 0.23 16 22 C -0.45 -12.04 8.16 -37.85 -0.31 -12.35 16 23 H 0.08 1.98 6.84 -52.49 -0.36 1.62 16 24 C 0.07 1.83 5.22 -17.33 -0.09 1.73 16 25 N -0.81 -21.19 10.83 55.54 0.60 -20.59 16 26 Si 0.91 18.95 29.58 -169.99 -5.03 13.92 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 28 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 29 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.48 6.75 -51.93 -0.35 1.13 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.39 7.54 8.59 -40.82 -0.35 7.19 16 34 H 0.06 0.84 7.42 -51.93 -0.39 0.46 16 35 H 0.06 1.01 5.90 -51.93 -0.31 0.70 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.91 7.41 -51.92 -0.38 0.52 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.03 0.21 8.10 -51.93 -0.42 -0.21 16 40 H 0.34 2.08 8.90 -39.29 -0.35 1.73 16 41 H 0.03 0.24 8.07 -51.93 -0.42 -0.17 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.74 7.44 -51.93 -0.39 0.36 16 44 H 0.08 1.06 5.62 -51.93 -0.29 0.77 16 45 H 0.09 2.02 6.64 -52.49 -0.35 1.67 16 46 H 0.13 3.46 6.17 -52.49 -0.32 3.13 16 47 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -30.34 359.91 -11.46 -41.80 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.19 Total: 12.60 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -3.69 Total: -12.80 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.58 Total: -55.20 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.39 Total: -5.74 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.34 -11.46 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155526128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.213 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds