Wall clock time and date at job start Tue Mar 31 2020 12:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31491 * 119.81753 * 2 1 4 4 C 1.32739 * 121.73055 * 179.97438 * 3 2 1 5 5 N 1.38370 * 119.42920 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00350 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47367 * 179.97438 * 6 5 4 8 8 H 1.08992 * 109.97238 * 306.06093 * 7 6 5 9 9 O 1.43365 * 109.86681 * 67.11348 * 7 6 5 10 10 C 1.43992 * 109.97925 * 119.56150 * 9 7 6 11 11 C 1.53824 * 104.50130 * 23.53940 * 10 9 7 12 12 H 1.09000 * 109.07621 * 78.33674 * 11 10 9 13 13 C 1.50846 * 112.84599 * 200.44097 * 11 10 9 14 14 N 1.46649 * 111.81286 * 65.03941 * 13 11 10 15 15 C 1.47211 * 109.68003 * 60.74826 * 14 13 11 16 16 C 1.52648 * 108.37703 * 293.92107 * 15 14 13 17 17 C 1.53060 * 110.80047 * 61.55282 * 16 15 14 18 18 H 1.08997 * 112.25708 * 76.68668 * 17 16 15 19 19 C 1.39706 * 121.14293 * 0.25734 * 4 3 2 20 20 C 1.36563 * 119.49007 * 359.48390 * 19 4 3 21 21 C 1.40756 * 119.81815 * 179.97438 * 2 1 3 22 22 C 1.41197 * 120.56727 * 0.04437 * 21 2 1 23 23 H 1.08001 * 120.00290 * 24.87794 * 22 21 2 24 24 C 1.39877 * 120.00101 * 204.88032 * 22 21 2 25 25 N 1.30902 * 119.99634 * 14.68124 * 24 22 21 26 26 Si 1.86795 * 119.99997 * 194.67729 * 24 22 21 27 27 H 1.48495 * 109.47366 * 60.00087 * 26 24 22 28 28 H 1.48504 * 109.46908 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47401 * 299.99870 * 26 24 22 30 30 H 1.08996 * 109.47049 * 89.99939 * 1 2 3 31 31 H 1.09002 * 109.46954 * 209.99995 * 1 2 3 32 32 H 1.09004 * 109.46902 * 330.00015 * 1 2 3 33 33 H 0.97006 * 120.00127 * 0.02562 * 5 4 3 34 34 H 1.08998 * 109.46969 * 59.99891 * 6 5 4 35 35 H 1.08997 * 109.46840 * 299.99964 * 6 5 4 36 36 H 1.09002 * 110.43054 * 142.34235 * 10 9 7 37 37 H 1.09007 * 110.42975 * 264.70868 * 10 9 7 38 38 H 1.09006 * 108.99698 * 304.46910 * 13 11 10 39 39 H 1.08990 * 109.00174 * 185.62120 * 13 11 10 40 40 H 1.00903 * 110.99616 * 183.76756 * 14 13 11 41 41 H 1.08997 * 109.67891 * 53.63743 * 15 14 13 42 42 H 1.08996 * 109.67865 * 174.15827 * 15 14 13 43 43 H 1.08997 * 109.21009 * 181.89277 * 16 15 14 44 44 H 1.08999 * 109.21195 * 301.21112 * 16 15 14 45 45 H 1.07997 * 120.25816 * 179.72307 * 19 4 3 46 46 H 1.08002 * 120.79720 * 180.25022 * 20 19 4 47 47 H 0.96995 * 119.99776 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1851 0.0005 5 7 4.1267 2.4123 -0.0001 6 6 5.5903 2.4759 0.0011 7 6 6.0373 3.9392 -0.0005 8 1 5.5701 4.4703 -0.8297 9 8 5.6771 4.5600 1.2406 10 6 6.8583 5.0312 1.9159 11 6 7.8956 5.2147 0.7950 12 1 7.6889 6.1457 0.2672 13 6 9.3147 5.2264 1.3064 14 7 9.6963 3.9337 1.8843 15 6 9.6028 2.8841 0.8563 16 6 8.1358 2.7208 0.4673 17 6 7.5831 4.0187 -0.1266 18 1 7.9115 4.1751 -1.1541 19 6 4.2495 0.0142 -0.0043 20 6 3.6199 -1.1976 0.0011 21 6 2.2069 -1.2212 0.0005 22 6 1.5091 -2.4487 0.0002 23 1 0.5048 -2.4990 -0.3940 24 6 2.1185 -3.5998 0.5103 25 7 3.2000 -3.4987 1.2408 26 14 1.3890 -5.2810 0.1491 27 1 1.3680 -5.5067 -1.3184 28 1 2.2154 -6.3293 0.7999 29 1 0.0033 -5.3438 0.6795 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.6057 3.2306 -0.0004 34 1 5.9763 1.9775 -0.8882 35 1 5.9748 1.9791 0.8918 36 1 6.6598 5.9819 2.4109 37 1 7.2040 4.2919 2.6385 38 1 9.4103 5.9984 2.0700 39 1 9.9875 5.4586 0.4810 40 1 10.6248 3.9733 2.2772 41 1 10.1844 3.1745 -0.0186 42 1 9.9843 1.9444 1.2554 43 1 8.0469 1.9227 -0.2696 44 1 7.5573 2.4566 1.3526 45 1 5.3281 0.0670 -0.0083 46 1 4.1882 -2.1160 0.0016 47 1 3.6228 -4.2969 1.5942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155526128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:28 Heat of formation + Delta-G solvation = -31.035184 kcal Electronic energy + Delta-G solvation = -26789.801871 eV Core-core repulsion = 23163.829115 eV Total energy + Delta-G solvation = -3625.972756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73309 -40.42315 -37.80157 -36.84978 -35.42654 -33.68189 -32.85550 -32.53298 -31.83161 -29.47416 -28.66148 -26.60828 -25.74216 -25.35822 -23.76001 -23.03089 -22.21776 -21.00311 -20.07505 -19.09220 -18.22832 -18.12422 -17.30968 -16.80050 -16.73293 -16.35214 -15.97357 -15.40284 -15.39120 -15.21989 -14.97217 -14.72886 -14.37111 -14.36136 -13.93147 -13.77699 -13.62265 -13.46962 -13.36900 -13.22458 -12.96618 -12.80066 -12.77255 -12.67513 -12.58306 -12.19454 -11.98518 -11.69376 -11.53693 -11.22882 -11.20286 -11.12706 -10.50067 -10.33741 -9.99464 -9.87540 -9.37749 -8.60632 -8.34348 -6.07578 0.90161 1.15824 1.42678 1.53401 1.60306 2.26682 2.53495 2.86196 2.96089 3.30913 3.32732 3.58617 3.77837 3.79436 4.03741 4.15216 4.19784 4.26465 4.28365 4.41838 4.45343 4.49123 4.60392 4.62358 4.65916 4.70376 4.75020 4.78806 4.80280 4.90501 4.95481 5.00943 5.02364 5.07471 5.11591 5.21205 5.22906 5.39270 5.40277 5.56679 5.67900 5.91486 6.02667 6.03236 6.07784 6.52643 6.53131 6.66967 6.88013 6.98098 7.16863 7.90211 8.44881 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.002883 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.587864 B = 9708.605320 C =10711.763257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.021 3.979 3 N -0.540 5.540 4 C 0.289 3.711 5 N -0.733 5.733 6 C 0.135 3.865 7 C 0.078 3.922 8 H 0.088 0.912 9 O -0.400 6.400 10 C 0.056 3.944 11 C -0.108 4.108 12 H 0.098 0.902 13 C 0.072 3.928 14 N -0.696 5.696 15 C 0.058 3.942 16 C -0.123 4.123 17 C -0.098 4.098 18 H 0.117 0.883 19 C -0.217 4.217 20 C -0.108 4.108 21 C -0.003 4.003 22 C -0.481 4.481 23 H 0.083 0.917 24 C 0.030 3.970 25 N -0.842 5.842 26 Si 0.982 3.018 27 H -0.262 1.262 28 H -0.273 1.273 29 H -0.260 1.260 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.393 0.607 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.355 0.645 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.323 13.910 -1.894 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 N -0.258 5.258 4 C 0.055 3.945 5 N -0.371 5.371 6 C 0.010 3.990 7 C 0.020 3.980 8 H 0.106 0.894 9 O -0.320 6.320 10 C -0.020 4.020 11 C -0.127 4.127 12 H 0.116 0.884 13 C -0.058 4.058 14 N -0.328 5.328 15 C -0.071 4.071 16 C -0.161 4.161 17 C -0.117 4.117 18 H 0.135 0.865 19 C -0.241 4.241 20 C -0.135 4.135 21 C -0.008 4.008 22 C -0.512 4.512 23 H 0.101 0.899 24 C -0.182 4.182 25 N -0.470 5.470 26 Si 0.803 3.197 27 H -0.186 1.186 28 H -0.197 1.197 29 H -0.184 1.184 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.174 0.826 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.364 14.353 -1.391 20.354 hybrid contribution 0.914 -1.249 -0.440 1.608 sum 15.278 13.105 -1.830 20.211 Atomic orbital electron populations 1.20237 0.88991 1.01522 1.01336 1.21323 0.96510 0.87286 1.06605 1.66458 1.08160 1.31129 1.20021 1.18082 0.88117 0.86519 1.01819 1.43717 1.05051 1.03526 1.84828 1.21766 0.79747 0.96936 1.00551 1.23190 0.96013 0.91430 0.87381 0.89435 1.88549 1.31872 1.77211 1.34367 1.23329 0.84019 0.99477 0.95182 1.22011 0.95964 0.98931 0.95826 0.88427 1.21224 0.93686 0.91857 0.98999 1.60716 1.33353 1.04982 1.33776 1.21926 0.95544 0.95767 0.93905 1.21758 0.96704 0.96861 1.00742 1.22675 0.92133 0.95745 1.01134 0.86477 1.20949 0.99218 0.92425 1.11490 1.21355 0.95122 0.96581 1.00430 1.18505 0.92824 0.94086 0.95432 1.19543 1.01886 0.92702 1.37065 0.89909 1.26712 0.94792 1.04734 0.91989 1.69874 1.19120 1.32556 1.25405 0.85253 0.79096 0.75863 0.79477 1.18603 1.19723 1.18386 0.91852 0.91441 0.92306 0.77347 0.91656 0.93466 0.89045 0.92471 0.89316 0.93448 0.82575 0.93543 0.90414 0.90894 0.92663 0.86577 0.86509 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.80 9.58 71.23 0.68 -2.11 16 2 C 0.02 1.11 6.86 43.22 0.30 1.40 16 3 N -0.54 -28.05 10.29 -179.37 -1.85 -29.90 16 4 C 0.29 14.02 7.64 133.32 1.02 15.04 16 5 N -0.73 -28.89 5.68 -344.86 -1.96 -30.85 16 6 C 0.13 4.18 3.35 86.38 0.29 4.47 16 7 C 0.08 1.89 3.35 31.38 0.11 2.00 16 8 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 9 O -0.40 -11.34 11.02 -148.98 -1.64 -12.98 16 10 C 0.06 1.19 6.78 72.26 0.49 1.68 16 11 C -0.11 -1.65 2.96 -10.81 -0.03 -1.68 16 12 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 13 C 0.07 0.84 5.91 85.65 0.51 1.34 16 14 N -0.70 -9.69 6.55 -518.19 -3.40 -13.08 16 15 C 0.06 0.86 6.55 86.13 0.56 1.42 16 16 C -0.12 -2.37 3.83 30.50 0.12 -2.26 16 17 C -0.10 -1.71 3.62 -9.58 -0.03 -1.74 16 18 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.22 -10.70 9.24 22.23 0.21 -10.49 16 20 C -0.11 -5.92 8.73 22.64 0.20 -5.72 16 21 C 0.00 -0.19 5.59 -21.18 -0.12 -0.31 16 22 C -0.48 -26.03 8.16 23.39 0.19 -25.84 16 23 H 0.08 4.24 6.84 -2.91 -0.02 4.22 16 24 C 0.03 1.53 5.22 85.23 0.45 1.98 16 25 N -0.84 -44.95 10.83 21.82 0.24 -44.71 16 26 Si 0.98 38.84 29.58 68.60 2.03 40.87 16 27 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 28 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 29 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 30 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.07 2.94 6.75 -2.39 -0.02 2.92 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.39 15.11 8.59 -92.70 -0.80 14.31 16 34 H 0.07 1.92 7.42 -2.39 -0.02 1.90 16 35 H 0.05 1.61 5.90 -2.39 -0.01 1.60 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.40 7.41 -2.38 -0.02 1.38 16 38 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.05 0.45 8.10 -2.39 -0.02 0.43 16 40 H 0.36 3.53 8.90 -89.69 -0.80 2.73 16 41 H 0.05 0.57 8.07 -2.39 -0.02 0.55 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.40 7.44 -2.39 -0.02 1.38 16 44 H 0.05 1.40 5.62 -2.39 -0.01 1.39 16 45 H 0.12 5.05 6.64 -2.91 -0.02 5.03 16 46 H 0.12 6.55 6.17 -2.91 -0.02 6.54 16 47 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 Total: -1.00 -66.67 359.91 -2.25 -68.92 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -0.59 Total: 42.56 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.92 Total: -20.82 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.97 Total: -118.55 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.64 Total: -12.98 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -66.67 -2.25 -68.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155526128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.885 kcal (2) G-P(sol) polarization free energy of solvation -66.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds