Wall clock time and date at job start Tue Mar 31 2020 11:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31883 * 119.61844 * 2 1 4 4 C 1.31850 * 121.73148 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.75875 * 359.97438 * 4 3 2 6 6 C 1.38635 * 119.16458 * 359.77243 * 5 4 3 7 7 C 1.38180 * 119.61561 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.42024 * 359.97438 * 7 2 1 9 9 C 1.50706 * 109.46817 * 84.99908 * 8 7 2 10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46933 * 120.62902 * 359.72617 * 11 9 8 13 13 C 1.53625 * 108.54354 * 126.36782 * 12 11 9 14 14 C 1.53042 * 109.24315 * 54.85108 * 13 12 11 15 15 C 1.52999 * 109.45778 * 178.49024 * 14 13 12 16 16 N 1.46502 * 109.47248 * 295.06997 * 15 14 13 17 17 C 1.36932 * 119.99980 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99881 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99956 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99780 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99862 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47184 * 89.99943 * 21 19 17 23 23 H 1.48507 * 109.46907 * 209.99737 * 21 19 17 24 24 H 1.48497 * 109.47237 * 329.99757 * 21 19 17 25 25 C 1.53036 * 109.53740 * 298.51425 * 14 13 12 26 26 C 1.46923 * 120.63273 * 179.97438 * 11 9 8 27 27 H 1.09000 * 109.47111 * 269.97736 * 1 2 3 28 28 H 1.09002 * 109.47212 * 29.97749 * 1 2 3 29 29 H 1.08994 * 109.47271 * 149.97942 * 1 2 3 30 30 H 1.07994 * 119.62474 * 179.97438 * 4 3 2 31 31 H 1.08002 * 120.41964 * 180.02562 * 5 4 3 32 32 H 1.07994 * 120.79386 * 180.23456 * 6 5 4 33 33 H 1.09000 * 109.46670 * 325.00131 * 8 7 2 34 34 H 1.09000 * 109.47247 * 204.99845 * 8 7 2 35 35 H 1.09005 * 109.58222 * 246.19866 * 12 11 9 36 36 H 1.08997 * 109.58563 * 6.61805 * 12 11 9 37 37 H 1.09003 * 109.63112 * 294.86217 * 13 12 11 38 38 H 1.09002 * 109.45456 * 174.73848 * 13 12 11 39 39 H 1.08999 * 109.44445 * 58.52789 * 14 13 12 40 40 H 1.09003 * 109.47176 * 55.07217 * 15 14 13 41 41 H 1.09000 * 109.47037 * 175.06633 * 15 14 13 42 42 H 0.96997 * 120.00117 * 359.97438 * 16 15 14 43 43 H 0.97004 * 120.00007 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.49703 * 301.40970 * 25 14 13 45 45 H 1.09003 * 109.51979 * 181.33539 * 25 14 13 46 46 H 1.09007 * 109.58345 * 353.37889 * 26 11 9 47 47 H 1.09004 * 109.58281 * 113.65687 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1951 -0.0005 5 6 4.2267 0.0342 -0.0005 6 6 3.5766 -1.1903 0.0048 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5068 -0.0005 9 6 1.0785 -2.8798 -1.4160 10 8 1.4017 -2.1564 -2.3342 11 7 0.3984 -4.0172 -1.6614 12 6 0.0051 -4.9067 -0.5600 13 6 -1.5077 -5.1580 -0.6514 14 6 -1.8466 -5.6947 -2.0439 15 6 -3.3470 -5.9823 -2.1281 16 7 -3.6898 -7.0632 -1.2004 17 6 -4.9853 -7.4957 -1.1019 18 1 -5.7544 -7.0398 -1.7078 19 6 -5.3100 -8.5202 -0.2233 20 7 -6.5553 -8.9357 -0.1283 21 14 -3.9799 -9.3082 0.8251 22 1 -3.8654 -8.5761 2.1121 23 1 -4.3345 -10.7255 1.0917 24 1 -2.6825 -9.2495 0.1052 25 6 -1.4669 -4.6541 -3.0999 26 6 0.0410 -4.3941 -3.0357 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 3.9753 2.1529 -0.0009 31 1 5.3057 0.0804 -0.0005 32 1 4.1367 -2.1136 0.0087 33 1 0.5267 -2.4012 0.5893 34 1 2.0628 -3.2869 0.4333 35 1 0.5411 -5.8521 -0.6446 36 1 0.2416 -4.4343 0.3934 37 1 -2.0449 -4.2251 -0.4804 38 1 -1.8003 -5.8897 0.1017 39 1 -1.2899 -6.6144 -2.2237 40 1 -3.9046 -5.0844 -1.8617 41 1 -3.6032 -6.2809 -3.1446 42 1 -2.9990 -7.4729 -0.6565 43 1 -6.7823 -9.6518 0.4854 44 1 -2.0045 -3.7260 -2.9058 45 1 -1.7301 -5.0269 -4.0898 46 1 0.3011 -3.5833 -3.7163 47 1 0.5818 -5.2970 -3.3194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206261923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:38 Heat of formation + Delta-G solvation = 3.450236 kcal Electronic energy + Delta-G solvation = -26470.498029 eV Core-core repulsion = 22846.020674 eV Total energy + Delta-G solvation = -3624.477356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98014 -39.96381 -37.86816 -35.15031 -34.16440 -33.23640 -32.91785 -31.38599 -30.71922 -29.09586 -27.65811 -26.73156 -23.90448 -23.44633 -22.91855 -22.21443 -21.40823 -20.40341 -19.08104 -17.77241 -17.23963 -17.14224 -16.67964 -16.08450 -15.47714 -15.04740 -14.71397 -14.66568 -14.43578 -14.15985 -13.96015 -13.67572 -13.52838 -13.34375 -13.20994 -12.96233 -12.69673 -12.66921 -12.45524 -12.41954 -12.27761 -11.99087 -11.68662 -11.43192 -11.27680 -10.95612 -10.61357 -10.50004 -10.29472 -10.19225 -10.11923 -9.83305 -9.68762 -9.61493 -9.02681 -8.93200 -8.77108 -7.26136 -5.79767 -3.15292 0.82597 1.03519 2.42381 2.80758 3.32156 3.33470 3.41025 3.52890 4.05084 4.26757 4.36581 4.47491 4.54979 4.59717 4.69113 4.69987 4.83315 4.89829 5.01681 5.04939 5.05993 5.19872 5.25835 5.31032 5.34675 5.38839 5.40677 5.46139 5.52841 5.65855 5.67724 5.78316 5.82334 5.85222 5.89625 5.96337 6.01692 6.07444 6.23115 6.29413 6.42758 6.46102 6.65491 6.75945 7.21475 7.76367 7.96811 7.98279 8.39270 9.18324 9.90424 10.10334 11.38811 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.002590 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.968999 B =10807.318346 C =11037.915082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.147 3.853 3 N -0.485 5.485 4 C 0.100 3.900 5 C -0.180 4.180 6 C -0.062 4.062 7 C -0.116 4.116 8 C -0.101 4.101 9 C 0.517 3.483 10 O -0.537 6.537 11 N -0.609 5.609 12 C 0.103 3.897 13 C -0.128 4.128 14 C -0.098 4.098 15 C 0.162 3.838 16 N -0.755 5.755 17 C -0.243 4.243 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.125 4.125 26 C 0.113 3.887 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.361 15.335 1.020 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 N -0.195 5.195 4 C -0.057 4.057 5 C -0.200 4.200 6 C -0.088 4.088 7 C -0.118 4.118 8 C -0.141 4.141 9 C 0.305 3.695 10 O -0.414 6.414 11 N -0.342 5.342 12 C -0.020 4.020 13 C -0.166 4.166 14 C -0.117 4.117 15 C 0.035 3.965 16 N -0.401 5.401 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.582 5.582 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.164 4.164 26 C -0.010 4.010 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.799 16.481 0.480 27.332 hybrid contribution 1.363 -1.658 0.837 2.304 sum 23.162 14.823 1.317 27.530 Atomic orbital electron populations 1.20770 0.88937 1.03873 1.02950 1.21083 0.96909 0.87671 0.93436 1.67525 1.10088 1.29085 1.12758 1.22720 0.89492 0.98441 0.95012 1.22064 1.01369 0.93373 1.03195 1.21427 0.93533 0.98585 0.95209 1.20097 0.94203 0.94905 1.02614 1.20683 1.02171 0.95627 0.95620 1.20407 0.77746 0.80472 0.90885 1.90716 1.53798 1.50662 1.46246 1.48168 1.55574 1.22131 1.08373 1.22000 0.96636 0.94121 0.89255 1.22030 0.93724 1.02396 0.98425 1.21359 0.98273 0.97965 0.94091 1.20648 0.90871 0.91344 0.93618 1.42722 1.07338 1.41663 1.48394 1.19068 0.84499 1.14320 1.19449 0.89281 1.24689 0.95928 0.98942 0.99735 1.69704 1.16406 1.31463 1.40672 0.86548 0.81901 0.79143 0.80935 1.21049 1.21745 1.20373 1.21887 0.94785 0.99822 0.99880 1.21622 0.95614 1.01003 0.82717 0.90151 0.90188 0.90844 0.82822 0.84838 0.85027 0.87299 0.87795 0.91021 0.89826 0.91176 0.90001 0.91035 0.95511 0.95522 0.80729 0.93057 0.91351 0.90430 0.89163 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.39 36.01 0.34 -0.72 16 2 C 0.15 1.68 6.78 -82.59 -0.56 1.12 16 3 N -0.49 -5.82 10.27 -9.48 -0.10 -5.92 16 4 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 5 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 6 C -0.06 -0.56 9.84 -39.27 -0.39 -0.94 16 7 C -0.12 -1.19 4.39 -104.48 -0.46 -1.64 16 8 C -0.10 -0.86 3.51 -29.03 -0.10 -0.96 16 9 C 0.52 5.93 6.92 -10.98 -0.08 5.85 16 10 O -0.54 -8.17 15.45 5.56 0.09 -8.08 16 11 N -0.61 -6.45 2.97 -172.52 -0.51 -6.96 16 12 C 0.10 0.95 6.37 -3.48 -0.02 0.93 16 13 C -0.13 -1.54 5.26 -26.39 -0.14 -1.68 16 14 C -0.10 -1.32 2.19 -90.58 -0.20 -1.52 16 15 C 0.16 2.94 5.65 -4.04 -0.02 2.92 16 16 N -0.76 -17.13 5.12 -59.91 -0.31 -17.43 16 17 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 18 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 20 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 21 Si 0.88 21.39 27.74 -169.99 -4.71 16.67 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 25 C -0.13 -1.44 5.36 -26.64 -0.14 -1.58 16 26 C 0.11 1.23 6.43 -3.74 -0.02 1.20 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.73 6.15 -51.93 -0.32 0.41 16 30 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.11 0.77 6.57 -51.93 -0.34 0.43 16 34 H 0.10 0.64 7.85 -51.93 -0.41 0.23 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.10 7.15 -51.93 -0.37 0.73 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.36 7.83 4.71 -40.82 -0.19 7.63 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 1.07 7.01 -51.92 -0.36 0.71 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -34.92 372.92 -9.18 -44.10 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.39 Total: 5.38 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.64 Total: -5.10 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.14 Total: -58.58 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.92 -9.18 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206261923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.550 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds