Wall clock time and date at job start Tue Mar 31 2020 11:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31883 * 119.61844 * 2 1 4 4 C 1.31850 * 121.73148 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.75875 * 359.97438 * 4 3 2 6 6 C 1.38635 * 119.16458 * 359.77243 * 5 4 3 7 7 C 1.38180 * 119.61561 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.42024 * 359.97438 * 7 2 1 9 9 C 1.50706 * 109.46817 * 84.99908 * 8 7 2 10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46933 * 120.62902 * 359.72617 * 11 9 8 13 13 C 1.53625 * 108.54354 * 126.36782 * 12 11 9 14 14 C 1.53042 * 109.24315 * 54.85108 * 13 12 11 15 15 C 1.52999 * 109.45778 * 178.49024 * 14 13 12 16 16 N 1.46502 * 109.47248 * 295.06997 * 15 14 13 17 17 C 1.36932 * 119.99980 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99881 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99956 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99780 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99862 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47184 * 89.99943 * 21 19 17 23 23 H 1.48507 * 109.46907 * 209.99737 * 21 19 17 24 24 H 1.48497 * 109.47237 * 329.99757 * 21 19 17 25 25 C 1.53036 * 109.53740 * 298.51425 * 14 13 12 26 26 C 1.46923 * 120.63273 * 179.97438 * 11 9 8 27 27 H 1.09000 * 109.47111 * 269.97736 * 1 2 3 28 28 H 1.09002 * 109.47212 * 29.97749 * 1 2 3 29 29 H 1.08994 * 109.47271 * 149.97942 * 1 2 3 30 30 H 1.07994 * 119.62474 * 179.97438 * 4 3 2 31 31 H 1.08002 * 120.41964 * 180.02562 * 5 4 3 32 32 H 1.07994 * 120.79386 * 180.23456 * 6 5 4 33 33 H 1.09000 * 109.46670 * 325.00131 * 8 7 2 34 34 H 1.09000 * 109.47247 * 204.99845 * 8 7 2 35 35 H 1.09005 * 109.58222 * 246.19866 * 12 11 9 36 36 H 1.08997 * 109.58563 * 6.61805 * 12 11 9 37 37 H 1.09003 * 109.63112 * 294.86217 * 13 12 11 38 38 H 1.09002 * 109.45456 * 174.73848 * 13 12 11 39 39 H 1.08999 * 109.44445 * 58.52789 * 14 13 12 40 40 H 1.09003 * 109.47176 * 55.07217 * 15 14 13 41 41 H 1.09000 * 109.47037 * 175.06633 * 15 14 13 42 42 H 0.96997 * 120.00117 * 359.97438 * 16 15 14 43 43 H 0.97004 * 120.00007 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.49703 * 301.40970 * 25 14 13 45 45 H 1.09003 * 109.51979 * 181.33539 * 25 14 13 46 46 H 1.09007 * 109.58345 * 353.37889 * 26 11 9 47 47 H 1.09004 * 109.58281 * 113.65687 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1951 -0.0005 5 6 4.2267 0.0342 -0.0005 6 6 3.5766 -1.1903 0.0048 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5068 -0.0005 9 6 1.0785 -2.8798 -1.4160 10 8 1.4017 -2.1564 -2.3342 11 7 0.3984 -4.0172 -1.6614 12 6 0.0051 -4.9067 -0.5600 13 6 -1.5077 -5.1580 -0.6514 14 6 -1.8466 -5.6947 -2.0439 15 6 -3.3470 -5.9823 -2.1281 16 7 -3.6898 -7.0632 -1.2004 17 6 -4.9853 -7.4957 -1.1019 18 1 -5.7544 -7.0398 -1.7078 19 6 -5.3100 -8.5202 -0.2233 20 7 -6.5553 -8.9357 -0.1283 21 14 -3.9799 -9.3082 0.8251 22 1 -3.8654 -8.5761 2.1121 23 1 -4.3345 -10.7255 1.0917 24 1 -2.6825 -9.2495 0.1052 25 6 -1.4669 -4.6541 -3.0999 26 6 0.0410 -4.3941 -3.0357 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 3.9753 2.1529 -0.0009 31 1 5.3057 0.0804 -0.0005 32 1 4.1367 -2.1136 0.0087 33 1 0.5267 -2.4012 0.5893 34 1 2.0628 -3.2869 0.4333 35 1 0.5411 -5.8521 -0.6446 36 1 0.2416 -4.4343 0.3934 37 1 -2.0449 -4.2251 -0.4804 38 1 -1.8003 -5.8897 0.1017 39 1 -1.2899 -6.6144 -2.2237 40 1 -3.9046 -5.0844 -1.8617 41 1 -3.6032 -6.2809 -3.1446 42 1 -2.9990 -7.4729 -0.6565 43 1 -6.7823 -9.6518 0.4854 44 1 -2.0045 -3.7260 -2.9058 45 1 -1.7301 -5.0269 -4.0898 46 1 0.3011 -3.5833 -3.7163 47 1 0.5818 -5.2970 -3.3194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206261923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:38 Heat of formation + Delta-G solvation = -19.126563 kcal Electronic energy + Delta-G solvation = -26471.477033 eV Core-core repulsion = 22846.020674 eV Total energy + Delta-G solvation = -3625.456359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73461 -40.76970 -38.92444 -36.66049 -34.92000 -34.42229 -33.90168 -32.81289 -31.99832 -29.87736 -28.58577 -27.86071 -25.29900 -24.34664 -23.85272 -23.17957 -22.59762 -21.48342 -20.03346 -19.56858 -18.19820 -17.83991 -17.35358 -16.89121 -16.60884 -16.30871 -15.92348 -15.74772 -15.44142 -15.38440 -15.03803 -14.71895 -14.57483 -14.28000 -14.02998 -14.00011 -13.96260 -13.70286 -13.37129 -13.29153 -13.20610 -13.08821 -12.95884 -12.76658 -12.35838 -12.16424 -12.12506 -11.86538 -11.67393 -11.49318 -11.37577 -11.00884 -10.93501 -10.58817 -10.39440 -9.71334 -9.64676 -9.27603 -8.00850 -5.34814 0.14412 0.36465 1.39220 1.45034 1.52495 1.60004 2.01996 2.51217 2.83202 3.30381 3.40064 3.55611 3.59640 3.65229 3.83122 3.86671 3.92378 3.97712 4.11357 4.11574 4.18282 4.38664 4.44050 4.46649 4.52018 4.58094 4.60984 4.67005 4.68481 4.73822 4.79187 4.83368 4.86772 4.94646 5.06671 5.09402 5.12089 5.15910 5.24174 5.28353 5.30406 5.52005 5.58584 5.77247 5.81468 6.22797 6.40840 7.06461 7.10325 7.15707 7.85637 8.07082 9.20951 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.002590 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.968999 B =10807.318346 C =11037.915082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.120 3.880 3 N -0.518 5.518 4 C 0.084 3.916 5 C -0.178 4.178 6 C -0.071 4.071 7 C -0.128 4.128 8 C -0.096 4.096 9 C 0.517 3.483 10 O -0.581 6.581 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.127 4.127 14 C -0.087 4.087 15 C 0.159 3.841 16 N -0.754 5.754 17 C -0.237 4.237 18 H 0.049 0.951 19 C -0.069 4.069 20 N -0.987 5.987 21 Si 0.960 3.040 22 H -0.272 1.272 23 H -0.300 1.300 24 H -0.244 1.244 25 C -0.117 4.117 26 C 0.116 3.884 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.369 0.631 43 H 0.258 0.742 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.977 14.781 2.369 29.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.018 4.018 3 N -0.228 5.228 4 C -0.073 4.073 5 C -0.197 4.197 6 C -0.096 4.096 7 C -0.130 4.130 8 C -0.136 4.136 9 C 0.306 3.694 10 O -0.461 6.461 11 N -0.340 5.340 12 C -0.015 4.015 13 C -0.166 4.166 14 C -0.106 4.106 15 C 0.033 3.967 16 N -0.400 5.400 17 C -0.368 4.368 18 H 0.067 0.933 19 C -0.260 4.260 20 N -0.638 5.638 21 Si 0.786 3.214 22 H -0.198 1.198 23 H -0.227 1.227 24 H -0.169 1.169 25 C -0.155 4.155 26 C -0.007 4.007 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.193 0.807 31 H 0.181 0.819 32 H 0.174 0.826 33 H 0.142 0.858 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.203 0.797 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 25.447 15.949 1.817 30.087 hybrid contribution 0.169 -1.394 0.312 1.439 sum 25.616 14.555 2.128 29.539 Atomic orbital electron populations 1.20748 0.88688 1.03070 1.03679 1.21351 0.97509 0.88327 0.94569 1.67496 1.11491 1.29873 1.13979 1.23206 0.89063 1.00148 0.94855 1.22431 1.02885 0.92755 1.01676 1.21841 0.93395 0.99903 0.94491 1.20313 0.95005 0.95097 1.02578 1.20750 1.03313 0.95718 0.93773 1.20899 0.76987 0.79856 0.91646 1.90702 1.55636 1.51925 1.47842 1.48240 1.55088 1.22157 1.08516 1.22102 0.94312 0.94996 0.90052 1.22000 0.96081 1.01692 0.96803 1.21246 0.94448 0.98945 0.95961 1.20801 0.94428 0.89471 0.92014 1.42659 1.05517 1.42530 1.49277 1.19024 0.85940 1.13684 1.18151 0.93258 1.25621 0.98641 0.99993 1.01766 1.69913 1.19289 1.32487 1.42098 0.85339 0.79737 0.77108 0.79201 1.19820 1.22661 1.16856 1.21794 0.95448 0.98734 0.99557 1.21547 0.94811 1.01174 0.83129 0.88638 0.91352 0.91195 0.80718 0.81860 0.82586 0.85770 0.84635 0.89326 0.86839 0.91796 0.90869 0.90340 0.96433 0.96364 0.79730 0.93374 0.92270 0.89880 0.90395 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 9.39 71.24 0.67 -1.36 16 2 C 0.12 2.66 6.78 42.54 0.29 2.95 16 3 N -0.52 -12.31 10.27 -183.89 -1.89 -14.20 16 4 C 0.08 1.50 11.18 84.69 0.95 2.45 16 5 C -0.18 -2.56 10.11 22.36 0.23 -2.33 16 6 C -0.07 -1.09 9.84 22.47 0.22 -0.87 16 7 C -0.13 -2.36 4.39 -19.77 -0.09 -2.45 16 8 C -0.10 -1.32 3.51 29.10 0.10 -1.22 16 9 C 0.52 10.64 6.92 87.66 0.61 11.24 16 10 O -0.58 -17.12 15.45 -3.03 -0.05 -17.16 16 11 N -0.61 -11.08 2.97 -818.12 -2.43 -13.51 16 12 C 0.11 1.53 6.37 86.51 0.55 2.08 16 13 C -0.13 -2.71 5.26 30.82 0.16 -2.55 16 14 C -0.09 -2.17 2.19 -10.77 -0.02 -2.19 16 15 C 0.16 5.69 5.65 86.38 0.49 6.18 16 16 N -0.75 -33.44 5.12 -343.44 -1.76 -35.20 16 17 C -0.24 -13.37 10.47 84.04 0.88 -12.49 16 18 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 19 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 20 N -0.99 -62.98 13.97 21.65 0.30 -62.68 16 21 Si 0.96 43.38 27.74 68.60 1.90 45.28 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 24 H -0.24 -9.60 6.52 99.48 0.65 -8.95 16 25 C -0.12 -2.51 5.36 30.65 0.16 -2.34 16 26 C 0.12 2.28 6.43 86.35 0.55 2.84 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.35 6.15 -2.39 -0.01 1.34 16 30 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.12 1.33 6.57 -2.39 -0.02 1.31 16 34 H 0.14 1.00 7.85 -2.39 -0.02 0.98 16 35 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.11 0.99 5.93 -2.39 -0.01 0.98 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.73 7.15 -2.39 -0.02 1.71 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.37 15.04 4.71 -92.71 -0.44 14.60 16 43 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.08 1.78 7.01 -2.38 -0.02 1.76 16 47 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -78.83 372.92 2.77 -76.06 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.47 Total: 25.01 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 6.22 Total: -3.60 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -5.77 Total: -125.59 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.05 Total: -17.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.90 Total: 45.28 kcal Total: -78.83 2.77 -76.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206261923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.937 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds