Wall clock time and date at job start Tue Mar 31 2020 11:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38165 * 119.55181 * 2 1 4 4 C 1.39795 * 119.00000 * 179.71158 * 3 2 1 5 5 C 1.48152 * 120.92414 * 180.30651 * 4 3 2 6 6 O 1.21521 * 119.99976 * 219.91519 * 5 4 3 7 7 N 1.34776 * 120.00154 * 39.91882 * 5 4 3 8 8 C 1.46930 * 120.62641 * 5.81462 * 7 5 4 9 9 C 1.53195 * 108.77473 * 126.37166 * 8 7 5 10 10 C 1.53042 * 109.31190 * 54.63268 * 9 8 7 11 11 C 1.53041 * 109.53887 * 298.63555 * 10 9 8 12 12 H 1.09005 * 109.49840 * 301.38117 * 11 10 9 13 13 C 1.52999 * 109.49882 * 181.31684 * 11 10 9 14 14 H 1.09003 * 109.46958 * 300.00426 * 13 11 10 15 15 C 1.52998 * 109.46977 * 60.00037 * 13 11 10 16 16 N 1.46499 * 109.47089 * 180.02562 * 13 11 10 17 17 C 1.36943 * 119.99760 * 155.00128 * 16 13 11 18 18 H 1.07997 * 119.99984 * 359.97438 * 17 16 13 19 19 C 1.38816 * 119.99582 * 179.97438 * 17 16 13 20 20 N 1.31608 * 120.00261 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99453 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47572 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46906 * 120.00245 * 21 19 17 24 24 H 1.48505 * 109.47081 * 240.00032 * 21 19 17 25 25 C 1.46924 * 120.63324 * 185.53446 * 7 5 4 26 26 C 1.39838 * 118.15648 * 0.55332 * 4 3 2 27 27 C 1.38133 * 118.99851 * 359.73239 * 26 4 3 28 28 N 1.31802 * 119.55115 * 180.27862 * 2 1 3 29 29 H 1.09000 * 109.46641 * 269.72406 * 1 2 3 30 30 H 1.08995 * 109.46529 * 29.72241 * 1 2 3 31 31 H 1.09003 * 109.46679 * 149.72730 * 1 2 3 32 32 H 1.08006 * 120.49879 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.58792 * 246.15675 * 8 7 5 34 34 H 1.08998 * 109.58900 * 6.58597 * 8 7 5 35 35 H 1.08997 * 109.49987 * 174.58989 * 9 8 7 36 36 H 1.09001 * 109.49587 * 294.68231 * 9 8 7 37 37 H 1.08995 * 109.46098 * 58.65865 * 10 9 8 38 38 H 1.09004 * 109.45980 * 178.63084 * 10 9 8 39 39 H 1.09001 * 109.47211 * 299.99945 * 15 13 11 40 40 H 1.08998 * 109.47433 * 60.00395 * 15 13 11 41 41 H 1.09005 * 109.47329 * 179.97438 * 15 13 11 42 42 H 0.96996 * 120.00506 * 334.99852 * 16 13 11 43 43 H 0.97004 * 120.00162 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58621 * 353.42096 * 25 7 5 45 45 H 1.09001 * 109.58279 * 113.84368 * 25 7 5 46 46 H 1.07997 * 120.50222 * 179.70963 * 26 4 3 47 47 H 1.08000 * 119.54805 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1885 0.0062 5 6 4.3599 2.4520 0.0132 6 8 5.3686 2.5507 -0.6573 7 7 3.9450 3.4920 0.7633 8 6 2.8023 3.3481 1.6757 9 6 3.2315 3.7929 3.0774 10 6 3.8038 5.2105 3.0054 11 6 5.0357 5.2196 2.0975 12 1 5.7804 4.5258 2.4876 13 6 5.6263 6.6303 2.0523 14 1 4.8817 7.3236 1.6611 15 6 6.0306 7.0594 3.4641 16 7 6.8051 6.6385 1.1825 17 6 7.1995 7.8006 0.5747 18 1 6.6412 8.7109 0.7362 19 6 8.3168 7.8084 -0.2490 20 7 8.9968 6.6990 -0.4463 21 14 8.8543 9.3934 -1.0786 22 1 7.9285 10.4902 -0.6977 23 1 10.2324 9.7365 -0.6448 24 1 8.8296 9.2137 -2.5526 25 6 4.6306 4.7894 0.6889 26 6 4.2344 -0.0507 0.0002 27 6 3.4741 -1.2040 -0.0059 28 7 2.1571 -1.1466 -0.0056 29 1 -0.3632 -0.0049 1.0277 30 1 -0.3632 0.8925 -0.5095 31 1 -0.3633 -0.8876 -0.5181 32 1 1.6493 2.1378 -0.0004 33 1 1.9783 3.9724 1.3305 34 1 2.4864 2.3053 1.7040 35 1 2.3681 3.7824 3.7427 36 1 3.9929 3.1121 3.4580 37 1 3.0500 5.8863 2.6016 38 1 4.0875 5.5388 4.0054 39 1 5.1532 7.0534 4.1109 40 1 6.7752 6.3662 3.8554 41 1 6.4518 8.0642 3.4319 42 1 7.3064 5.8209 1.0371 43 1 9.7774 6.7044 -1.0222 44 1 5.5205 4.6972 0.0662 45 1 3.9586 5.5336 0.2615 46 1 5.3130 -0.1053 -0.0001 47 1 3.9654 -2.1657 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753798919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:33 Heat of formation + Delta-G solvation = 8.980206 kcal Electronic energy + Delta-G solvation = -27005.732568 eV Core-core repulsion = 23381.495010 eV Total energy + Delta-G solvation = -3624.237558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02250 -39.60176 -37.78065 -35.54194 -33.40587 -33.19661 -32.43565 -31.80471 -29.86291 -28.31112 -27.84921 -25.95378 -24.49581 -23.72792 -23.23007 -22.45658 -21.05482 -19.62493 -19.19859 -17.56339 -17.00669 -16.90379 -16.24890 -15.84392 -15.12032 -14.98773 -14.82826 -14.68785 -14.35935 -13.91485 -13.76618 -13.61141 -13.43393 -13.12303 -12.95700 -12.81148 -12.66885 -12.56805 -12.36296 -12.04684 -11.91889 -11.35376 -11.15766 -11.03137 -10.86273 -10.72982 -10.64671 -10.29507 -10.26898 -10.13842 -9.98377 -9.82436 -9.57240 -9.47219 -9.19980 -8.89127 -8.52901 -6.91593 -5.70848 -3.00392 0.62421 0.79905 2.71167 2.95077 3.46068 3.51044 3.51986 3.53871 3.98715 4.17863 4.47538 4.59843 4.64679 4.75488 4.78693 4.88179 4.97175 5.12245 5.20332 5.23139 5.26140 5.30926 5.35242 5.41694 5.59460 5.60567 5.66176 5.73939 5.75739 5.78196 5.84904 5.90879 5.99233 6.09215 6.18095 6.20348 6.34573 6.41467 6.46274 6.48857 6.68541 6.71696 6.91268 7.09994 7.41778 7.66188 7.74435 8.15241 8.46524 9.57800 10.15412 10.49695 11.51334 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.003244 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.912839 B = 8628.612544 C = 9577.119196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.121 3.879 3 C -0.146 4.146 4 C -0.070 4.070 5 C 0.551 3.449 6 O -0.514 6.514 7 N -0.601 5.601 8 C 0.096 3.904 9 C -0.134 4.134 10 C -0.115 4.115 11 C -0.103 4.103 12 H 0.070 0.930 13 C 0.181 3.819 14 H 0.047 0.953 15 C -0.165 4.165 16 N -0.725 5.725 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.928 5.928 21 Si 0.903 3.097 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.122 3.878 26 C -0.130 4.130 27 C 0.103 3.897 28 N -0.476 5.476 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.145 0.855 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.989 -13.174 6.494 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.166 4.166 4 C -0.081 4.081 5 C 0.337 3.663 6 O -0.389 6.389 7 N -0.334 5.334 8 C -0.027 4.027 9 C -0.172 4.172 10 C -0.153 4.153 11 C -0.123 4.123 12 H 0.088 0.912 13 C 0.070 3.930 14 H 0.065 0.935 15 C -0.225 4.225 16 N -0.366 5.366 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.576 5.576 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 C 0.001 3.999 26 C -0.150 4.150 27 C -0.054 4.054 28 N -0.186 5.186 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.127 0.873 45 H 0.085 0.915 46 H 0.163 0.837 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.887 -13.683 6.031 24.090 hybrid contribution 1.166 1.432 -0.432 1.896 sum -17.721 -12.252 5.599 22.259 Atomic orbital electron populations 1.20730 0.88392 1.03702 1.03275 1.21261 0.97199 0.87875 0.95265 1.22252 0.93418 1.00028 1.00912 1.20444 0.93951 0.94575 0.99136 1.18274 0.84500 0.82926 0.80557 1.90886 1.24029 1.81963 1.42066 1.48093 1.32328 1.12017 1.40987 1.22089 0.88497 1.02149 0.89932 1.21929 1.01241 0.98157 0.95880 1.21636 0.97456 0.95658 1.00550 1.21688 0.96844 0.99302 0.94500 0.91171 1.20165 0.90153 0.92075 0.90590 0.93502 1.22481 0.99616 1.01753 0.98620 1.42468 1.29698 1.10279 1.54173 1.19231 1.08000 0.88625 1.21146 0.91240 1.24740 0.98433 0.96895 1.00791 1.69675 1.20520 1.25475 1.41963 0.86174 0.78182 0.82936 0.79219 1.20633 1.21980 1.21919 1.21688 0.98644 0.81334 0.98238 1.22285 1.02341 0.91731 0.98667 1.22745 0.89057 0.98418 0.95179 1.67392 1.10321 1.29399 1.11504 0.90198 0.90543 0.90284 0.83954 0.91120 0.89572 0.90870 0.91607 0.91792 0.91097 0.94283 0.93620 0.92853 0.78176 0.93570 0.87305 0.91450 0.83716 0.81978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.17 36.01 0.37 -0.29 16 2 C 0.12 1.17 6.78 -82.63 -0.56 0.61 16 3 C -0.15 -1.47 7.12 -39.03 -0.28 -1.75 16 4 C -0.07 -0.88 5.15 -104.65 -0.54 -1.42 16 5 C 0.55 8.83 7.38 -12.19 -0.09 8.74 16 6 O -0.51 -10.70 16.37 5.35 0.09 -10.62 16 7 N -0.60 -8.55 2.98 -174.03 -0.52 -9.07 16 8 C 0.10 0.96 4.94 -3.71 -0.02 0.95 16 9 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 10 C -0.12 -1.36 4.85 -26.69 -0.13 -1.49 16 11 C -0.10 -1.64 1.96 -90.72 -0.18 -1.82 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 13 C 0.18 3.45 2.48 -67.93 -0.17 3.28 16 14 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 15 C -0.16 -2.88 9.14 37.16 0.34 -2.54 16 16 N -0.72 -17.95 4.52 -53.42 -0.24 -18.19 16 17 C -0.24 -6.59 9.93 -15.05 -0.15 -6.74 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 21 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 C 0.12 2.07 5.45 -3.94 -0.02 2.05 16 26 C -0.13 -1.50 9.77 -39.02 -0.38 -1.88 16 27 C 0.10 1.03 11.17 -17.59 -0.20 0.83 16 28 N -0.48 -5.16 10.25 -9.52 -0.10 -5.26 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.14 1.17 6.65 -52.48 -0.35 0.82 16 33 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 34 H 0.09 0.76 4.73 -51.93 -0.25 0.52 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 39 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.38 10.40 7.61 -40.82 -0.31 10.09 16 43 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 44 H 0.11 2.36 6.49 -51.93 -0.34 2.02 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 47 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -33.85 373.98 -9.06 -42.90 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.36 Total: 8.26 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.26 Total: -3.41 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.13 Total: -60.43 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.85 -9.06 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753798919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.884 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds