Wall clock time and date at job start Tue Mar 31 2020 11:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38165 * 119.55181 * 2 1 4 4 C 1.39795 * 119.00000 * 179.71158 * 3 2 1 5 5 C 1.48152 * 120.92414 * 180.30651 * 4 3 2 6 6 O 1.21521 * 119.99976 * 219.91519 * 5 4 3 7 7 N 1.34776 * 120.00154 * 39.91882 * 5 4 3 8 8 C 1.46930 * 120.62641 * 5.81462 * 7 5 4 9 9 C 1.53195 * 108.77473 * 126.37166 * 8 7 5 10 10 C 1.53042 * 109.31190 * 54.63268 * 9 8 7 11 11 C 1.53041 * 109.53887 * 298.63555 * 10 9 8 12 12 H 1.09005 * 109.49840 * 301.38117 * 11 10 9 13 13 C 1.52999 * 109.49882 * 181.31684 * 11 10 9 14 14 H 1.09003 * 109.46958 * 300.00426 * 13 11 10 15 15 C 1.52998 * 109.46977 * 60.00037 * 13 11 10 16 16 N 1.46499 * 109.47089 * 180.02562 * 13 11 10 17 17 C 1.36943 * 119.99760 * 155.00128 * 16 13 11 18 18 H 1.07997 * 119.99984 * 359.97438 * 17 16 13 19 19 C 1.38816 * 119.99582 * 179.97438 * 17 16 13 20 20 N 1.31608 * 120.00261 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99453 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47572 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46906 * 120.00245 * 21 19 17 24 24 H 1.48505 * 109.47081 * 240.00032 * 21 19 17 25 25 C 1.46924 * 120.63324 * 185.53446 * 7 5 4 26 26 C 1.39838 * 118.15648 * 0.55332 * 4 3 2 27 27 C 1.38133 * 118.99851 * 359.73239 * 26 4 3 28 28 N 1.31802 * 119.55115 * 180.27862 * 2 1 3 29 29 H 1.09000 * 109.46641 * 269.72406 * 1 2 3 30 30 H 1.08995 * 109.46529 * 29.72241 * 1 2 3 31 31 H 1.09003 * 109.46679 * 149.72730 * 1 2 3 32 32 H 1.08006 * 120.49879 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.58792 * 246.15675 * 8 7 5 34 34 H 1.08998 * 109.58900 * 6.58597 * 8 7 5 35 35 H 1.08997 * 109.49987 * 174.58989 * 9 8 7 36 36 H 1.09001 * 109.49587 * 294.68231 * 9 8 7 37 37 H 1.08995 * 109.46098 * 58.65865 * 10 9 8 38 38 H 1.09004 * 109.45980 * 178.63084 * 10 9 8 39 39 H 1.09001 * 109.47211 * 299.99945 * 15 13 11 40 40 H 1.08998 * 109.47433 * 60.00395 * 15 13 11 41 41 H 1.09005 * 109.47329 * 179.97438 * 15 13 11 42 42 H 0.96996 * 120.00506 * 334.99852 * 16 13 11 43 43 H 0.97004 * 120.00162 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58621 * 353.42096 * 25 7 5 45 45 H 1.09001 * 109.58279 * 113.84368 * 25 7 5 46 46 H 1.07997 * 120.50222 * 179.70963 * 26 4 3 47 47 H 1.08000 * 119.54805 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1885 0.0062 5 6 4.3599 2.4520 0.0132 6 8 5.3686 2.5507 -0.6573 7 7 3.9450 3.4920 0.7633 8 6 2.8023 3.3481 1.6757 9 6 3.2315 3.7929 3.0774 10 6 3.8038 5.2105 3.0054 11 6 5.0357 5.2196 2.0975 12 1 5.7804 4.5258 2.4876 13 6 5.6263 6.6303 2.0523 14 1 4.8817 7.3236 1.6611 15 6 6.0306 7.0594 3.4641 16 7 6.8051 6.6385 1.1825 17 6 7.1995 7.8006 0.5747 18 1 6.6412 8.7109 0.7362 19 6 8.3168 7.8084 -0.2490 20 7 8.9968 6.6990 -0.4463 21 14 8.8543 9.3934 -1.0786 22 1 7.9285 10.4902 -0.6977 23 1 10.2324 9.7365 -0.6448 24 1 8.8296 9.2137 -2.5526 25 6 4.6306 4.7894 0.6889 26 6 4.2344 -0.0507 0.0002 27 6 3.4741 -1.2040 -0.0059 28 7 2.1571 -1.1466 -0.0056 29 1 -0.3632 -0.0049 1.0277 30 1 -0.3632 0.8925 -0.5095 31 1 -0.3633 -0.8876 -0.5181 32 1 1.6493 2.1378 -0.0004 33 1 1.9783 3.9724 1.3305 34 1 2.4864 2.3053 1.7040 35 1 2.3681 3.7824 3.7427 36 1 3.9929 3.1121 3.4580 37 1 3.0500 5.8863 2.6016 38 1 4.0875 5.5388 4.0054 39 1 5.1532 7.0534 4.1109 40 1 6.7752 6.3662 3.8554 41 1 6.4518 8.0642 3.4319 42 1 7.3064 5.8209 1.0371 43 1 9.7774 6.7044 -1.0222 44 1 5.5205 4.6972 0.0662 45 1 3.9586 5.5336 0.2615 46 1 5.3130 -0.1053 -0.0001 47 1 3.9654 -2.1657 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753798919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:32 Heat of formation + Delta-G solvation = -13.342921 kcal Electronic energy + Delta-G solvation = -27006.700571 eV Core-core repulsion = 23381.495010 eV Total energy + Delta-G solvation = -3625.205561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01763 -40.63098 -39.10991 -37.05512 -34.86898 -34.03770 -33.57364 -33.10597 -31.38785 -29.88969 -28.55385 -27.06396 -26.11128 -24.80684 -24.56417 -23.40770 -22.25695 -21.08895 -20.25045 -19.17510 -18.48896 -17.83534 -17.16635 -16.93998 -16.73524 -16.26445 -15.90446 -15.58201 -15.53613 -15.34408 -15.23749 -14.76270 -14.37994 -14.32078 -14.24888 -14.04759 -13.87019 -13.42381 -13.27358 -13.05384 -13.03294 -12.82915 -12.74081 -12.54181 -12.38529 -12.11627 -12.04538 -11.86370 -11.71224 -11.52237 -11.32639 -11.19930 -10.96551 -10.87249 -10.46777 -9.95387 -9.73176 -8.99660 -7.92301 -5.20966 -0.29658 0.02009 1.44491 1.45900 1.54180 1.55608 1.82225 2.55867 2.68296 3.19770 3.32635 3.41394 3.66988 3.76226 3.81605 3.87858 3.93747 3.98116 4.08751 4.17204 4.26369 4.39892 4.43507 4.53798 4.56212 4.61779 4.66264 4.73738 4.84038 4.86575 4.89827 4.90172 4.96924 5.00946 5.02472 5.05636 5.15251 5.22889 5.27126 5.35924 5.44770 5.48936 5.55655 5.61456 5.63252 6.25904 6.28830 6.88326 6.94224 7.33851 8.11911 8.33288 9.31505 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.003244 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.912839 B = 8628.612544 C = 9577.119196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.123 3.877 3 C -0.138 4.138 4 C -0.086 4.086 5 C 0.544 3.456 6 O -0.581 6.581 7 N -0.595 5.595 8 C 0.089 3.911 9 C -0.128 4.128 10 C -0.108 4.108 11 C -0.090 4.090 12 H 0.046 0.954 13 C 0.173 3.827 14 H 0.051 0.949 15 C -0.154 4.154 16 N -0.739 5.739 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.082 4.082 20 N -0.973 5.973 21 Si 0.970 3.030 22 H -0.261 1.261 23 H -0.296 1.296 24 H -0.298 1.298 25 C 0.129 3.871 26 C -0.146 4.146 27 C 0.108 3.892 28 N -0.489 5.489 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.166 0.834 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.367 0.633 43 H 0.247 0.753 44 H 0.050 0.950 45 H 0.074 0.926 46 H 0.135 0.865 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.231 -13.002 8.347 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.014 4.014 3 C -0.158 4.158 4 C -0.097 4.097 5 C 0.333 3.667 6 O -0.461 6.461 7 N -0.326 5.326 8 C -0.031 4.031 9 C -0.166 4.166 10 C -0.146 4.146 11 C -0.111 4.111 12 H 0.064 0.936 13 C 0.065 3.935 14 H 0.069 0.931 15 C -0.214 4.214 16 N -0.378 5.378 17 C -0.362 4.362 18 H 0.097 0.903 19 C -0.274 4.274 20 N -0.624 5.624 21 Si 0.799 3.201 22 H -0.185 1.185 23 H -0.224 1.224 24 H -0.226 1.226 25 C 0.006 3.994 26 C -0.167 4.167 27 C -0.048 4.048 28 N -0.199 5.199 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.198 0.802 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.153 0.847 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -23.224 -13.488 7.958 28.011 hybrid contribution 2.372 1.335 -0.953 2.884 sum -20.852 -12.153 7.005 25.131 Atomic orbital electron populations 1.20859 0.85651 1.04691 1.04726 1.21851 0.98880 0.87166 0.93533 1.22434 0.91941 1.01399 1.00044 1.20255 0.95048 0.92923 1.01448 1.18909 0.83946 0.84216 0.79657 1.90847 1.27108 1.83236 1.44937 1.48170 1.32919 1.10458 1.41065 1.22500 0.87401 1.04042 0.89204 1.21937 1.02335 0.96150 0.96205 1.21628 0.95439 0.97762 0.99790 1.21532 0.98352 0.96415 0.94757 0.93568 1.20478 0.88255 0.94322 0.90477 0.93077 1.22327 1.01042 1.00099 0.97896 1.42724 1.31221 1.08778 1.55104 1.19656 1.07176 0.89623 1.19703 0.90276 1.25577 0.99303 0.99963 1.02565 1.69863 1.21224 1.27831 1.43501 0.85113 0.77680 0.79773 0.77486 1.18497 1.22354 1.22599 1.21353 0.96888 0.83054 0.98074 1.22345 1.02243 0.92278 0.99805 1.23104 0.88951 0.98800 0.93939 1.67512 1.10440 1.30134 1.11855 0.88326 0.88626 0.90286 0.81675 0.88120 0.87902 0.86773 0.92921 0.89980 0.89871 0.89919 0.94732 0.94649 0.80201 0.94410 0.93099 0.90769 0.84701 0.79370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.17 71.24 0.72 -0.16 16 2 C 0.12 2.02 6.78 42.55 0.29 2.30 16 3 C -0.14 -2.46 7.12 22.63 0.16 -2.30 16 4 C -0.09 -2.17 5.15 -19.88 -0.10 -2.27 16 5 C 0.54 18.33 7.38 86.88 0.64 18.97 16 6 O -0.58 -26.58 16.37 -3.78 -0.06 -26.64 16 7 N -0.60 -16.93 2.98 -822.80 -2.45 -19.38 16 8 C 0.09 1.49 4.94 86.36 0.43 1.92 16 9 C -0.13 -2.01 6.08 30.67 0.19 -1.83 16 10 C -0.11 -2.19 4.85 30.62 0.15 -2.04 16 11 C -0.09 -2.87 1.96 -10.86 -0.02 -2.89 16 12 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 13 C 0.17 6.59 2.48 44.99 0.11 6.70 16 14 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 15 C -0.15 -5.20 9.14 71.98 0.66 -4.54 16 16 N -0.74 -38.09 4.52 -322.94 -1.46 -39.55 16 17 C -0.23 -12.96 9.93 84.03 0.83 -12.12 16 18 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 19 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 20 N -0.97 -63.14 13.06 21.65 0.28 -62.85 16 21 Si 0.97 47.87 29.55 68.60 2.03 49.90 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 24 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 25 C 0.13 4.53 5.45 86.22 0.47 5.00 16 26 C -0.15 -3.46 9.77 22.63 0.22 -3.24 16 27 C 0.11 2.06 11.17 84.67 0.95 3.00 16 28 N -0.49 -9.57 10.25 -184.03 -1.89 -11.45 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.17 2.09 6.65 -2.91 -0.02 2.07 16 33 H 0.10 1.18 8.13 -2.39 -0.02 1.16 16 34 H 0.10 1.45 4.73 -2.39 -0.01 1.44 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.52 6.36 -2.38 -0.02 1.51 16 39 H 0.08 2.07 6.40 -2.39 -0.02 2.05 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.37 21.28 7.61 -92.71 -0.71 20.57 16 43 H 0.25 15.63 8.31 -92.70 -0.77 14.86 16 44 H 0.05 2.41 6.49 -2.39 -0.02 2.39 16 45 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 46 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 47 H 0.19 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -80.59 373.98 2.88 -77.71 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.27 Total: 30.21 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 6.16 Total: 2.06 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -5.51 Total: -133.24 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -80.59 2.88 -77.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753798919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.365 kcal (2) G-P(sol) polarization free energy of solvation -80.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds