Wall clock time and date at job start Tue Mar 31 2020 12:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38598 * 120.32553 * 2 1 4 4 N 1.31498 * 120.90049 * 180.02562 * 3 2 1 5 5 C 1.32747 * 121.64303 * 359.97438 * 4 3 2 6 6 C 1.48163 * 119.72178 * 180.02562 * 5 4 3 7 7 O 1.21514 * 120.00113 * 185.37284 * 6 5 4 8 8 N 1.34776 * 120.00361 * 5.37407 * 6 5 4 9 9 C 1.46497 * 120.00531 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.49584 * 34.92954 * 9 8 6 11 11 C 1.53036 * 109.50245 * 154.99842 * 9 8 6 12 12 C 1.53039 * 109.54001 * 181.31492 * 11 9 8 13 13 C 1.53185 * 109.31314 * 298.63457 * 12 11 9 14 14 H 1.09004 * 109.58684 * 294.70430 * 13 12 11 15 15 C 1.53004 * 109.58894 * 174.42100 * 13 12 11 16 16 N 1.46924 * 108.77653 * 54.63477 * 13 12 11 17 17 C 1.36940 * 120.63394 * 126.41102 * 16 13 12 18 18 H 1.08001 * 119.99472 * 332.06161 * 17 16 13 19 19 C 1.38816 * 120.00235 * 152.05468 * 17 16 13 20 20 N 1.31615 * 119.99772 * 335.23094 * 19 17 16 21 21 Si 1.86798 * 119.99797 * 155.22915 * 19 17 16 22 22 H 1.48497 * 109.46994 * 85.00013 * 21 19 17 23 23 H 1.48497 * 109.47041 * 204.99807 * 21 19 17 24 24 H 1.48500 * 109.47469 * 325.00126 * 21 19 17 25 25 C 1.46927 * 118.74106 * 306.39067 * 16 13 12 26 26 C 1.39270 * 120.55444 * 359.72377 * 5 4 3 27 27 C 1.50703 * 120.46868 * 180.28250 * 26 5 4 28 28 C 1.38584 * 120.32154 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47231 * 269.98127 * 1 2 3 30 30 H 1.08999 * 109.47394 * 29.97791 * 1 2 3 31 31 H 1.09004 * 109.47591 * 149.97801 * 1 2 3 32 32 H 1.07997 * 119.55226 * 0.03894 * 3 2 1 33 33 H 0.97005 * 119.99378 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.45816 * 301.34162 * 11 9 8 35 35 H 1.09004 * 109.45911 * 61.30964 * 11 9 8 36 36 H 1.09000 * 109.49491 * 58.59065 * 12 11 9 37 37 H 1.09004 * 109.49562 * 178.68594 * 12 11 9 38 38 H 1.09000 * 109.46558 * 60.00199 * 15 13 12 39 39 H 1.08998 * 109.47366 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.47090 * 300.00484 * 15 13 12 41 41 H 0.97003 * 119.99287 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.58538 * 293.82275 * 25 16 13 43 43 H 1.08997 * 109.59219 * 173.39485 * 25 16 13 44 44 H 1.09001 * 109.46911 * 277.91232 * 27 26 5 45 45 H 1.08994 * 109.46983 * 37.91722 * 27 26 5 46 46 H 1.09002 * 109.46827 * 157.91553 * 27 26 5 47 47 H 1.07998 * 120.76035 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5217 1.2095 -0.0005 5 6 4.2294 0.0865 -0.0005 6 6 5.7097 0.1510 -0.0005 7 8 6.3623 -0.8693 -0.0991 8 7 6.3324 1.3413 0.1088 9 6 7.7959 1.4052 0.1082 10 1 8.1933 0.6383 -0.5567 11 6 8.2469 2.7850 -0.3762 12 6 9.7759 2.8417 -0.4083 13 6 10.3208 2.6242 1.0067 14 1 10.0190 3.4539 1.6460 15 6 11.8479 2.5410 0.9612 16 7 9.7746 1.3671 1.5358 17 6 10.6068 0.3964 2.0261 18 1 11.6153 0.3092 1.6498 19 6 10.1541 -0.4755 3.0069 20 7 9.1706 -0.1157 3.8041 21 14 10.9409 -2.1592 3.1952 22 1 12.1487 -2.0481 4.0521 23 1 9.9713 -3.0910 3.8250 24 1 11.3284 -2.6769 1.8584 25 6 8.3184 1.1713 1.5293 26 6 3.5922 -1.1519 0.0058 27 6 4.3976 -2.4257 0.0121 28 6 2.2066 -1.1963 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6648 2.1305 0.0006 33 1 5.8113 2.1557 0.1871 34 1 7.8557 2.9640 -1.3777 35 1 7.8696 3.5495 0.3030 36 1 10.1551 2.0614 -1.0682 37 1 10.0961 3.8168 -0.7756 38 1 12.2504 3.4697 0.5567 39 1 12.2336 2.3867 1.9689 40 1 12.1475 1.7078 0.3255 41 1 8.8541 -0.7252 4.4892 42 1 7.8513 1.8813 2.2118 43 1 8.0851 0.1534 1.8415 44 1 4.7113 -2.6623 -1.0046 45 1 5.2770 -2.2963 0.6429 46 1 3.7869 -3.2397 0.4027 47 1 1.6844 -2.1416 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071698607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:26 Heat of formation + Delta-G solvation = 11.666644 kcal Electronic energy + Delta-G solvation = -27211.196413 eV Core-core repulsion = 23587.075347 eV Total energy + Delta-G solvation = -3624.121065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.75102 -39.00856 -37.51993 -34.62489 -33.81905 -33.34328 -32.72302 -30.67847 -29.86563 -27.92806 -27.42275 -25.85767 -24.88133 -23.71297 -22.29528 -21.77234 -20.70247 -20.06133 -19.27073 -17.75631 -16.94959 -16.32123 -15.48465 -15.13434 -15.09422 -14.78349 -14.49923 -14.03087 -13.80844 -13.76446 -13.37169 -13.33365 -13.25650 -13.03909 -12.81120 -12.65910 -12.47797 -12.36158 -12.22768 -11.84583 -11.70673 -11.44104 -11.08395 -10.90978 -10.62799 -10.48458 -10.35847 -10.21777 -9.95270 -9.88432 -9.70916 -9.62507 -9.40310 -9.15565 -8.92135 -8.42188 -8.34093 -6.60797 -5.72835 -3.09590 0.64284 1.12593 2.97237 3.43444 3.48479 3.53368 3.57510 3.90832 4.20541 4.51961 4.58430 4.61755 4.74998 4.88821 5.05934 5.25058 5.29247 5.37777 5.41078 5.47755 5.51772 5.61198 5.63082 5.70010 5.76835 5.87065 5.99222 6.00949 6.10731 6.16799 6.31821 6.33970 6.36474 6.43834 6.48981 6.52681 6.65232 6.67762 6.79359 7.01028 7.08790 7.16651 7.32325 7.64955 7.67785 7.92359 8.04470 8.50988 8.64400 9.26474 9.93720 10.49647 11.35557 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.003896 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.727234 B = 7185.370409 C = 8487.445899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C 0.086 3.914 4 N -0.451 5.451 5 C 0.073 3.927 6 C 0.565 3.435 7 O -0.522 6.522 8 N -0.700 5.700 9 C 0.116 3.884 10 H 0.084 0.916 11 C -0.116 4.116 12 C -0.125 4.125 13 C 0.165 3.835 14 H 0.025 0.975 15 C -0.136 4.136 16 N -0.582 5.582 17 C -0.258 4.258 18 H 0.070 0.930 19 C 0.010 3.990 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.171 3.829 26 C -0.067 4.067 27 C -0.118 4.118 28 C -0.091 4.091 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.159 0.841 33 H 0.402 0.598 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.252 0.748 42 H 0.018 0.982 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.057 0.943 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 3.048 -9.296 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.121 4.121 3 C -0.074 4.074 4 N -0.161 5.161 5 C -0.065 4.065 6 C 0.349 3.651 7 O -0.398 6.398 8 N -0.349 5.349 9 C 0.011 3.989 10 H 0.102 0.898 11 C -0.154 4.154 12 C -0.165 4.165 13 C 0.058 3.942 14 H 0.042 0.958 15 C -0.194 4.194 16 N -0.305 5.305 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.190 4.190 20 N -0.534 5.534 21 Si 0.721 3.279 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.043 3.957 26 C -0.070 4.070 27 C -0.174 4.174 28 C -0.117 4.117 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.237 0.763 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.122 0.878 46 H 0.076 0.924 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.731 3.027 -9.213 17.636 hybrid contribution -0.628 -1.203 0.280 1.385 sum -15.359 1.824 -8.934 17.861 Atomic orbital electron populations 1.20755 0.90009 1.03228 1.02814 1.21118 0.97664 0.94171 0.99109 1.22625 0.89417 0.97563 0.97807 1.67537 1.08590 1.30298 1.09684 1.21187 0.94681 0.89036 1.01561 1.17781 0.85387 0.84328 0.77612 1.90772 1.65785 1.33525 1.49734 1.45940 1.08181 1.08470 1.72341 1.22011 0.77191 0.97449 1.02237 0.89809 1.21670 0.97172 0.96606 0.99963 1.22042 0.94136 1.00417 0.99935 1.20484 0.92709 0.89555 0.91424 0.95774 1.21798 0.95906 0.99465 1.02184 1.44038 1.01435 1.13901 1.71134 1.19061 0.96970 1.07510 1.15186 0.91191 1.24954 0.98784 1.00021 0.95200 1.70131 1.30495 1.34535 1.18267 0.86494 0.78356 0.85270 0.77784 1.21461 1.21629 1.20454 1.20993 0.83482 1.01936 0.89255 1.20974 0.94194 0.96556 0.95256 1.21068 1.00507 0.91705 1.04157 1.21421 0.93004 0.98448 0.98832 0.90592 0.90976 0.91210 0.82393 0.76302 0.92967 0.92183 0.92033 0.92645 0.94373 0.92021 0.92748 0.93808 0.96364 0.89721 0.90346 0.87812 0.92419 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.03 36.00 0.36 -0.31 16 2 C -0.12 -1.15 5.91 -104.36 -0.62 -1.77 16 3 C 0.09 0.95 10.86 -17.56 -0.19 0.76 16 4 N -0.45 -6.45 9.56 -9.80 -0.09 -6.54 16 5 C 0.07 1.18 6.75 -83.01 -0.56 0.62 16 6 C 0.56 10.70 7.72 -12.18 -0.09 10.61 16 7 O -0.52 -11.35 12.99 5.35 0.07 -11.28 16 8 N -0.70 -12.62 5.07 -54.53 -0.28 -12.90 16 9 C 0.12 2.34 2.61 -67.81 -0.18 2.16 16 10 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 11 C -0.12 -1.96 5.35 -26.69 -0.14 -2.10 16 12 C -0.13 -2.19 5.37 -26.62 -0.14 -2.33 16 13 C 0.16 3.44 3.50 -67.60 -0.24 3.20 16 14 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 15 C -0.14 -2.60 7.94 37.16 0.29 -2.30 16 16 N -0.58 -14.69 2.99 -164.77 -0.49 -15.18 16 17 C -0.26 -7.15 8.57 -15.06 -0.13 -7.28 16 18 H 0.07 1.89 6.23 -52.49 -0.33 1.56 16 19 C 0.01 0.29 4.69 -17.43 -0.08 0.21 16 20 N -0.89 -26.73 11.72 55.49 0.65 -26.08 16 21 Si 0.89 22.52 29.62 -169.99 -5.04 17.48 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.17 4.20 4.95 -3.71 -0.02 4.18 16 26 C -0.07 -0.95 5.93 -104.09 -0.62 -1.56 16 27 C -0.12 -1.66 8.69 36.01 0.31 -1.34 16 28 C -0.09 -1.00 9.50 -39.31 -0.37 -1.37 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.40 6.41 7.95 -40.82 -0.32 6.08 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 1.27 7.65 -51.93 -0.40 0.88 16 40 H 0.05 1.05 7.41 -51.93 -0.38 0.67 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 2.43 6.31 -51.93 -0.33 2.10 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.10 1.81 5.94 -51.93 -0.31 1.50 16 46 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 47 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -32.48 372.62 -9.48 -41.96 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.51 Total: 5.53 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.41 Total: 1.39 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.21 Total: -60.70 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.28 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.04 Total: 17.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.48 -9.48 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071698607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.629 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds