Wall clock time and date at job start Tue Mar 31 2020 11:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 110.91391 * 2 1 4 4 C 1.54912 * 111.00316 * 236.09667 * 2 1 3 5 5 N 1.47428 * 104.83195 * 204.91757 * 4 2 1 6 6 C 1.34771 * 125.64487 * 204.09708 * 5 4 2 7 7 O 1.21280 * 120.00452 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99450 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46804 * 179.97438 * 8 6 5 10 10 C 1.50707 * 109.46804 * 179.97438 * 9 8 6 11 11 C 1.38228 * 119.61423 * 125.00302 * 10 9 8 12 12 C 1.38629 * 119.16077 * 179.97438 * 11 10 9 13 13 C 1.38677 * 118.41892 * 0.02562 * 12 11 10 14 14 C 1.38187 * 119.16178 * 359.97438 * 13 12 11 15 15 N 1.31851 * 119.62134 * 304.72674 * 10 9 8 16 16 C 1.47026 * 108.70126 * 24.12608 * 5 4 2 17 17 C 1.54321 * 107.26948 * 358.94607 * 16 5 4 18 18 H 1.09011 * 110.71547 * 219.26152 * 17 16 5 19 19 N 1.46499 * 110.72131 * 96.16898 * 17 16 5 20 20 C 1.36935 * 119.99938 * 86.44823 * 19 17 16 21 21 H 1.08000 * 120.00518 * 359.72965 * 20 19 17 22 22 C 1.38817 * 119.99990 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99869 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46676 * 90.00727 * 24 22 20 26 26 H 1.48502 * 109.46977 * 210.00025 * 24 22 20 27 27 H 1.48494 * 109.47494 * 330.00753 * 24 22 20 28 28 H 1.08994 * 109.47417 * 296.09669 * 1 2 3 29 29 H 1.09003 * 109.47115 * 56.10013 * 1 2 3 30 30 H 1.09006 * 109.47238 * 176.09664 * 1 2 3 31 31 H 1.09007 * 109.47097 * 183.90039 * 3 2 1 32 32 H 1.09000 * 109.47176 * 303.90159 * 3 2 1 33 33 H 1.08992 * 109.47398 * 63.90336 * 3 2 1 34 34 H 1.09004 * 110.36734 * 86.07895 * 4 2 1 35 35 H 1.08998 * 110.37152 * 323.75625 * 4 2 1 36 36 H 1.08990 * 109.47454 * 299.99545 * 8 6 5 37 37 H 1.09000 * 109.46912 * 60.00399 * 8 6 5 38 38 H 1.08996 * 109.47736 * 300.00340 * 9 8 6 39 39 H 1.09000 * 109.46729 * 60.00693 * 9 8 6 40 40 H 1.08002 * 120.42078 * 359.96084 * 11 10 9 41 41 H 1.07999 * 120.79159 * 179.97438 * 12 11 10 42 42 H 1.07997 * 120.42006 * 179.97438 * 13 12 11 43 43 H 1.07997 * 119.61302 * 179.97438 * 14 13 12 44 44 H 1.08997 * 109.88145 * 239.52265 * 16 5 4 45 45 H 1.09000 * 110.00406 * 118.43388 * 16 5 4 46 46 H 0.96999 * 119.99984 * 266.44758 * 19 17 16 47 47 H 0.96996 * 119.99743 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4291 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4476 -1.5616 -1.5940 7 8 4.3009 -1.4998 -2.7963 8 6 5.7711 -1.9945 -1.0177 9 6 6.7486 -2.2960 -2.1554 10 6 8.0723 -2.7283 -1.5791 11 6 8.6240 -3.9354 -1.9654 12 6 9.8422 -4.3236 -1.4297 13 6 10.4626 -3.4795 -0.5209 14 6 9.8505 -2.2878 -0.1824 15 7 8.6934 -1.9483 -0.7163 16 6 3.4674 -1.2741 0.6961 17 6 2.0861 -0.8080 1.2022 18 1 2.1920 -0.1725 2.0815 19 7 1.2268 -1.9574 1.4962 20 6 1.2816 -2.5563 2.7264 21 1 1.9613 -2.1840 3.4785 22 6 0.4669 -3.6452 3.0052 23 7 -0.3577 -4.1023 2.0868 24 14 0.5422 -4.4626 4.6831 25 1 -0.4352 -3.8139 5.5939 26 1 0.2108 -5.9038 4.5470 27 1 1.9103 -4.3198 5.2425 28 1 -0.3634 0.4520 0.9228 29 1 -0.3633 0.5732 -0.8530 30 1 -0.3634 -1.0253 -0.0700 31 1 3.1636 1.4025 -0.0699 32 1 1.6704 1.9731 -0.8530 33 1 1.7836 1.9299 0.9228 34 1 2.1560 -0.1720 -2.0837 35 1 1.4519 -1.6704 -1.4025 36 1 6.1741 -1.1969 -0.3938 37 1 5.6287 -2.8911 -0.4143 38 1 6.3455 -3.0938 -2.7791 39 1 6.8910 -1.3997 -2.7591 40 1 8.1123 -4.5683 -2.6754 41 1 10.2970 -5.2614 -1.7127 42 1 11.4122 -3.7501 -0.0833 43 1 10.3270 -1.6252 0.5249 44 1 4.2426 -0.5998 1.0599 45 1 3.6662 -2.2884 1.0423 46 1 0.6190 -2.2943 0.8194 47 1 -0.9267 -4.8634 2.2815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996123713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:16 Heat of formation + Delta-G solvation = 4.141707 kcal Electronic energy + Delta-G solvation = -26570.613822 eV Core-core repulsion = 22946.166451 eV Total energy + Delta-G solvation = -3624.447371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.44188 -39.87705 -37.95299 -34.16489 -33.91266 -33.13751 -32.52197 -30.76467 -30.26658 -27.91273 -26.79863 -26.60711 -24.59624 -23.78425 -23.59702 -21.78039 -21.31950 -18.93934 -18.50622 -17.31315 -17.11928 -16.53551 -16.35750 -15.76111 -15.53227 -15.25806 -14.70922 -14.29746 -14.12462 -13.95342 -13.82159 -13.49054 -13.16439 -13.01035 -12.77509 -12.48536 -12.43931 -12.09885 -11.98004 -11.81573 -11.63788 -11.57883 -11.48748 -11.09602 -11.00004 -10.91145 -10.55487 -10.42785 -10.24817 -10.07221 -9.83333 -9.68294 -9.60160 -9.51207 -9.11748 -8.99545 -8.17397 -7.06489 -5.84505 -3.14287 0.91403 1.08676 2.97875 3.35974 3.38795 3.44451 3.45988 3.63968 4.12365 4.49697 4.51572 4.63614 4.77091 4.87027 4.91540 5.05136 5.12557 5.18059 5.22884 5.27828 5.42190 5.46700 5.54177 5.62885 5.70745 5.72859 5.77988 5.82073 5.93381 5.97465 5.98896 6.07480 6.10083 6.15549 6.23027 6.24759 6.31204 6.38519 6.42643 6.51873 6.60405 6.70693 6.80231 6.93206 7.63370 7.83078 7.96077 8.33472 8.50767 9.45458 10.00611 10.35476 11.37652 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010916 B = 0.003474 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.515289 B = 8058.801844 C = 9733.551792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.120 3.880 5 N -0.604 5.604 6 C 0.526 3.474 7 O -0.560 6.560 8 C -0.125 4.125 9 C -0.053 4.053 10 C 0.135 3.865 11 C -0.169 4.169 12 C -0.074 4.074 13 C -0.183 4.183 14 C 0.102 3.898 15 N -0.481 5.481 16 C 0.072 3.928 17 C 0.179 3.821 18 H 0.069 0.931 19 N -0.713 5.713 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.008 4.008 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.155 0.845 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.387 0.613 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.648 5.114 -6.231 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.187 4.187 4 C -0.002 4.002 5 N -0.336 5.336 6 C 0.316 3.684 7 O -0.439 6.439 8 C -0.166 4.166 9 C -0.091 4.091 10 C -0.002 4.002 11 C -0.189 4.189 12 C -0.100 4.100 13 C -0.203 4.203 14 C -0.055 4.055 15 N -0.191 5.191 16 C -0.054 4.054 17 C 0.067 3.933 18 H 0.087 0.913 19 N -0.354 5.354 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.205 4.205 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.172 0.828 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.252 5.828 -6.486 18.444 hybrid contribution 0.381 -1.654 0.662 1.822 sum 16.634 4.174 -5.824 18.111 Atomic orbital electron populations 1.21575 0.92841 1.02851 1.01015 1.22004 0.96542 0.94818 0.95707 1.21677 1.00637 0.94838 1.01533 1.22254 0.83054 0.97998 0.96895 1.48415 1.11911 1.65515 1.07805 1.20240 0.85009 0.77074 0.86122 1.90653 1.83612 1.54933 1.14729 1.21493 0.92143 1.03789 0.99125 1.20291 0.88592 1.03341 0.96872 1.21355 0.95943 0.90492 0.92420 1.22045 0.96944 0.97848 1.02079 1.21596 0.94472 0.99176 0.94750 1.22129 1.01797 0.96393 0.99996 1.22770 0.91065 0.94737 0.96933 1.67488 1.09018 1.33650 1.08908 1.23257 1.01438 1.02086 0.78655 1.21221 0.88241 0.89577 0.94294 0.91272 1.42458 1.45468 1.32760 1.14672 1.19223 1.18360 1.09472 0.90614 0.91030 1.24737 0.98996 0.98863 0.97866 1.69654 1.27341 1.27553 1.33118 0.86213 0.77571 0.78708 0.83794 1.21651 1.21814 1.20735 0.92106 0.93643 0.91229 0.92835 0.92847 0.92349 0.91293 0.91390 0.88130 0.89107 0.89523 0.89213 0.84647 0.84908 0.84952 0.82776 0.92719 0.90571 0.77750 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.22 37.16 0.31 -1.69 16 2 C -0.09 -1.40 0.83 -152.36 -0.13 -1.53 16 3 C -0.13 -1.71 8.57 37.15 0.32 -1.39 16 4 C 0.12 2.04 5.81 -2.53 -0.01 2.02 16 5 N -0.60 -10.30 3.31 -170.51 -0.56 -10.86 16 6 C 0.53 8.93 7.85 -10.98 -0.09 8.84 16 7 O -0.56 -10.89 16.24 5.56 0.09 -10.80 16 8 C -0.13 -1.73 4.75 -27.88 -0.13 -1.87 16 9 C -0.05 -0.66 4.90 -27.88 -0.14 -0.80 16 10 C 0.14 1.61 6.17 -82.58 -0.51 1.10 16 11 C -0.17 -1.70 9.71 -39.44 -0.38 -2.08 16 12 C -0.07 -0.63 10.18 -39.27 -0.40 -1.03 16 13 C -0.18 -1.52 10.11 -39.44 -0.40 -1.92 16 14 C 0.10 1.00 11.18 -17.55 -0.20 0.81 16 15 N -0.48 -5.94 9.89 -9.47 -0.09 -6.03 16 16 C 0.07 1.22 5.91 -3.06 -0.02 1.20 16 17 C 0.18 3.28 2.86 -66.10 -0.19 3.09 16 18 H 0.07 1.26 8.03 -51.92 -0.42 0.84 16 19 N -0.71 -16.49 4.61 -51.65 -0.24 -16.73 16 20 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -26.99 13.06 55.49 0.72 -26.27 16 24 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.28 6.38 -51.93 -0.33 0.95 16 31 H 0.05 0.71 7.91 -51.93 -0.41 0.30 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 35 H 0.07 1.26 7.98 -51.93 -0.41 0.85 16 36 H 0.10 1.35 7.95 -51.93 -0.41 0.93 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.05 7.83 -51.93 -0.41 0.65 16 39 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.14 1.12 7.95 -52.49 -0.42 0.70 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 46 H 0.39 9.65 6.10 -40.82 -0.25 9.40 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -31.23 383.91 -9.20 -40.43 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.66 Total: 9.99 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.21 Total: -2.09 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.17 Total: -59.89 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.23 -9.20 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996123713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.567 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds