Wall clock time and date at job start Tue Mar 31 2020 11:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38178 * 120.49464 * 2 1 4 4 N 1.31804 * 120.89120 * 180.02562 * 3 2 1 5 5 C 1.31826 * 122.04787 * 359.97438 * 4 3 2 6 6 C 1.38129 * 120.89873 * 359.73521 * 5 4 3 7 7 C 1.39792 * 120.50189 * 179.97438 * 2 1 3 8 8 C 1.48146 * 120.92475 * 359.97438 * 7 2 1 9 9 O 1.21521 * 119.99985 * 354.15968 * 8 7 2 10 10 N 1.34779 * 120.00477 * 174.15783 * 8 7 2 11 11 C 1.46490 * 120.00259 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47272 * 35.00170 * 11 10 8 13 13 C 1.52998 * 109.47257 * 275.00073 * 11 10 8 14 14 C 1.52999 * 109.47153 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47469 * 60.00092 * 14 13 11 16 16 C 1.53007 * 109.47030 * 300.00121 * 15 14 13 17 17 C 1.52999 * 109.47094 * 59.99648 * 16 15 14 18 18 H 1.09000 * 109.47250 * 60.00155 * 17 16 15 19 19 C 1.52998 * 109.47153 * 180.02562 * 17 16 15 20 20 N 1.46502 * 109.47080 * 295.00065 * 19 17 16 21 21 C 1.36941 * 119.99944 * 179.97438 * 20 19 17 22 22 H 1.07995 * 119.99712 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99772 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00031 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 120.00254 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47135 * 89.99675 * 25 23 21 27 27 H 1.48500 * 109.46826 * 209.99589 * 25 23 21 28 28 H 1.48495 * 109.46770 * 329.99427 * 25 23 21 29 29 H 1.09002 * 109.46985 * 263.74881 * 1 2 3 30 30 H 1.08997 * 109.47417 * 23.74625 * 1 2 3 31 31 H 1.08997 * 109.47352 * 143.75309 * 1 2 3 32 32 H 1.07998 * 119.55652 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.54675 * 180.02562 * 5 4 3 34 34 H 1.07996 * 120.49738 * 180.28876 * 6 5 4 35 35 H 0.97000 * 119.99378 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47059 * 300.00227 * 13 11 10 37 37 H 1.08994 * 109.47205 * 60.00204 * 13 11 10 38 38 H 1.09000 * 109.47334 * 299.99469 * 14 13 11 39 39 H 1.09002 * 109.47206 * 179.97438 * 14 13 11 40 40 H 1.08998 * 109.47644 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.46943 * 59.99740 * 15 14 13 42 42 H 1.08998 * 109.47211 * 180.02562 * 16 15 14 43 43 H 1.09000 * 109.46455 * 299.99815 * 16 15 14 44 44 H 1.09005 * 109.46920 * 54.99964 * 19 17 16 45 45 H 1.08996 * 109.47173 * 175.00030 * 19 17 16 46 46 H 0.96996 * 120.00038 * 0.02562 * 20 19 17 47 47 H 0.97004 * 120.00183 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1998 -0.0005 5 6 4.2334 0.0873 -0.0005 6 6 3.6137 -1.1472 0.0055 7 6 2.2165 -1.2045 0.0005 8 6 1.5080 -2.5055 0.0017 9 8 0.2980 -2.5383 0.1093 10 7 2.2053 -3.6528 -0.1166 11 6 1.5045 -4.9392 -0.1160 12 1 0.5426 -4.8293 -0.6168 13 6 1.2792 -5.3966 1.3265 14 6 0.5478 -6.7405 1.3271 15 6 1.3920 -7.7809 0.5882 16 6 1.6174 -7.3235 -0.8544 17 6 2.3487 -5.9796 -0.8549 18 1 3.3106 -6.0891 -0.3541 19 6 2.5735 -5.5219 -2.2975 20 7 3.4791 -6.4563 -2.9707 21 6 3.8276 -6.2495 -4.2788 22 1 3.4352 -5.3975 -4.8139 23 6 4.6860 -7.1345 -4.9164 24 7 5.0214 -6.9356 -6.1735 25 14 5.3653 -8.6079 -3.9905 26 1 4.4486 -9.7639 -4.1588 27 1 6.7049 -8.9559 -4.5286 28 1 5.4825 -8.2748 -2.5481 29 1 -0.3633 -0.1119 1.0216 30 1 -0.3634 0.9406 -0.4138 31 1 -0.3634 -0.8288 -0.6076 32 1 1.6690 2.1264 -0.0004 33 1 5.3120 0.1419 -0.0005 34 1 4.1995 -2.0545 0.0101 35 1 3.1710 -3.6266 -0.2029 36 1 2.2411 -5.5066 1.8272 37 1 0.6781 -4.6553 1.8530 38 1 -0.4141 -6.6310 0.8263 39 1 0.3877 -7.0666 2.3548 40 1 0.8708 -8.7382 0.5882 41 1 2.3538 -7.8904 1.0891 42 1 2.2184 -8.0649 -1.3809 43 1 0.6554 -7.2139 -1.3552 44 1 1.6193 -5.4977 -2.8239 45 1 3.0140 -4.5250 -2.2978 46 1 3.8312 -7.2217 -2.4901 47 1 5.6210 -7.5542 -6.6193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:57 Heat of formation + Delta-G solvation = -5.343222 kcal Electronic energy + Delta-G solvation = -26920.475507 eV Core-core repulsion = 23295.616839 eV Total energy + Delta-G solvation = -3624.858668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99914 -39.73300 -38.22564 -34.87032 -34.55221 -33.56631 -32.35732 -31.96082 -30.10201 -29.49964 -27.50018 -25.61928 -24.81374 -23.04432 -22.61377 -21.87274 -20.84345 -20.63406 -19.96838 -18.23116 -17.58422 -16.98096 -15.94153 -15.63648 -15.45918 -15.34960 -14.78185 -14.60382 -14.37652 -14.10199 -14.01053 -13.75214 -13.61284 -13.42386 -13.07077 -12.83556 -12.79490 -12.63798 -12.46961 -12.11469 -11.78954 -11.76152 -11.28689 -11.11648 -11.03068 -10.86508 -10.58776 -10.43164 -10.26558 -10.15681 -10.07720 -10.03869 -9.61782 -9.48313 -9.20726 -9.02475 -8.91179 -7.27082 -5.80208 -3.16110 0.51527 0.83692 2.75698 2.95231 3.32372 3.35074 3.41405 3.61559 4.17187 4.35448 4.48638 4.54895 4.59166 4.61596 4.73005 4.76184 4.88939 5.05146 5.14839 5.18599 5.37755 5.40360 5.43928 5.47181 5.49133 5.51244 5.55343 5.58245 5.60795 5.70518 5.76883 5.84707 5.96822 5.99831 6.07780 6.11460 6.18207 6.20599 6.37264 6.38119 6.41889 6.45098 6.59935 6.73107 7.36430 7.66444 7.95915 8.04457 8.38600 9.17537 9.89599 10.09307 11.38265 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.003910 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.051826 B = 7160.213218 C = 8892.124382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C 0.091 3.909 4 N -0.467 5.467 5 C 0.087 3.913 6 C -0.134 4.134 7 C -0.093 4.093 8 C 0.559 3.441 9 O -0.527 6.527 10 N -0.712 5.712 11 C 0.155 3.845 12 H 0.092 0.908 13 C -0.126 4.126 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.108 4.108 17 C -0.105 4.105 18 H 0.075 0.925 19 C 0.163 3.837 20 N -0.754 5.754 21 C -0.245 4.245 22 H 0.089 0.911 23 C 0.005 3.995 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.402 0.598 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.027 0.973 45 H 0.026 0.974 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 9.251 18.750 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.067 4.067 4 N -0.176 5.176 5 C -0.069 4.069 6 C -0.154 4.154 7 C -0.104 4.104 8 C 0.346 3.654 9 O -0.404 6.404 10 N -0.362 5.362 11 C 0.051 3.949 12 H 0.110 0.890 13 C -0.165 4.165 14 C -0.152 4.152 15 C -0.160 4.160 16 C -0.147 4.147 17 C -0.124 4.124 18 H 0.093 0.907 19 C 0.035 3.965 20 N -0.400 5.400 21 C -0.375 4.375 22 H 0.107 0.893 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.714 3.286 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.158 0.842 35 H 0.237 0.763 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.425 10.102 18.582 22.416 hybrid contribution 0.848 -1.904 0.406 2.123 sum -6.577 8.198 18.988 21.703 Atomic orbital electron populations 1.20982 0.89027 1.03558 1.03737 1.21125 0.98445 0.92455 0.96036 1.22742 0.89787 0.97375 0.96775 1.67545 1.08319 1.31868 1.09843 1.22729 1.00652 0.87193 0.96366 1.22389 0.93920 1.00375 0.98744 1.20271 0.93789 0.93966 1.02348 1.18118 0.86971 0.83537 0.76771 1.90723 1.13342 1.87060 1.49314 1.46016 1.11102 1.05703 1.73419 1.21031 0.96803 0.81157 0.95917 0.88989 1.21898 1.00874 0.97344 0.96367 1.21478 0.99064 0.94419 1.00289 1.21610 1.00008 0.98246 0.96140 1.21511 1.00984 0.96115 0.96041 1.21663 0.98768 0.94666 0.97345 0.90701 1.20643 0.93788 0.93025 0.89004 1.42705 1.56200 1.29398 1.11679 1.19046 1.22927 1.09371 0.86106 0.89333 1.24665 0.99838 0.98717 0.95824 1.69702 1.39427 1.38706 1.10318 0.86567 0.78752 0.84031 0.79274 1.21029 1.21712 1.20386 0.90478 0.91897 0.88475 0.82202 0.82072 0.84196 0.76256 0.91892 0.91604 0.91706 0.92023 0.91931 0.92069 0.90890 0.91496 0.95459 0.95647 0.80636 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.84 36.01 0.32 -0.84 16 2 C -0.08 -0.86 5.93 -104.06 -0.62 -1.47 16 3 C 0.09 0.93 10.84 -17.59 -0.19 0.74 16 4 N -0.47 -5.31 10.34 -13.30 -0.14 -5.44 16 5 C 0.09 0.87 11.17 -17.59 -0.20 0.67 16 6 C -0.13 -1.33 9.60 -39.02 -0.37 -1.71 16 7 C -0.09 -1.08 5.91 -104.65 -0.62 -1.70 16 8 C 0.56 7.22 7.70 -12.19 -0.09 7.12 16 9 O -0.53 -7.89 13.19 5.35 0.07 -7.82 16 10 N -0.71 -8.36 4.26 -54.66 -0.23 -8.59 16 11 C 0.16 1.92 1.90 -67.94 -0.13 1.79 16 12 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 13 C -0.13 -1.35 5.49 -26.73 -0.15 -1.50 16 14 C -0.11 -1.14 5.92 -26.73 -0.16 -1.30 16 15 C -0.12 -1.32 5.92 -26.73 -0.16 -1.47 16 16 C -0.11 -1.45 5.08 -26.73 -0.14 -1.59 16 17 C -0.11 -1.46 1.80 -90.62 -0.16 -1.62 16 18 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 19 C 0.16 2.99 5.56 -4.04 -0.02 2.96 16 20 N -0.75 -17.19 5.13 -59.91 -0.31 -17.49 16 21 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 25 Si 0.88 21.63 27.74 -169.99 -4.71 16.92 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 31 H 0.10 1.19 5.94 -51.93 -0.31 0.88 16 32 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.14 1.09 6.58 -52.49 -0.35 0.74 16 35 H 0.40 4.15 6.57 -40.82 -0.27 3.89 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.10 7.18 -51.93 -0.37 0.73 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.03 0.47 7.30 -51.93 -0.38 0.09 16 46 H 0.36 7.97 4.71 -40.82 -0.19 7.77 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -33.03 370.84 -9.24 -42.27 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.34 Total: 9.78 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.94 Total: -6.84 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.10 Total: -59.89 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.07 Total: -7.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.03 -9.24 -42.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.926 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds