Wall clock time and date at job start Tue Mar 31 2020 11:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38167 * 120.50020 * 2 1 4 4 N 1.31800 * 120.89587 * 179.97438 * 3 2 1 5 5 C 1.31820 * 122.04727 * 359.97438 * 4 3 2 6 6 C 1.38126 * 120.90047 * 0.02562 * 5 4 3 7 7 C 1.39792 * 120.49754 * 179.97438 * 2 1 3 8 8 C 1.48152 * 120.92666 * 0.04473 * 7 2 1 9 9 O 1.21510 * 119.99792 * 6.05394 * 8 7 2 10 10 N 1.34772 * 120.00207 * 186.04656 * 8 7 2 11 11 C 1.46505 * 120.00118 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46630 * 325.00732 * 11 10 8 13 13 C 1.53005 * 109.46661 * 85.00187 * 11 10 8 14 14 C 1.52998 * 109.46790 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47115 * 300.00465 * 14 13 11 16 16 C 1.52995 * 109.47671 * 59.99998 * 15 14 13 17 17 C 1.53000 * 109.47003 * 205.00150 * 11 10 8 18 18 H 1.08990 * 109.47458 * 299.99995 * 17 11 10 19 19 C 1.52995 * 109.47009 * 60.00368 * 17 11 10 20 20 N 1.46499 * 109.47172 * 184.99468 * 19 17 11 21 21 C 1.36939 * 120.00305 * 179.97438 * 20 19 17 22 22 H 1.07995 * 119.99700 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00074 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00252 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00216 * 180.02562 * 23 21 20 26 26 H 1.48510 * 109.46765 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47608 * 119.99589 * 25 23 21 28 28 H 1.48500 * 109.47373 * 239.99943 * 25 23 21 29 29 H 1.08991 * 109.46790 * 96.33509 * 1 2 3 30 30 H 1.09000 * 109.46680 * 216.33492 * 1 2 3 31 31 H 1.09001 * 109.46856 * 336.33128 * 1 2 3 32 32 H 1.08006 * 119.55347 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.55191 * 179.72022 * 5 4 3 34 34 H 1.07995 * 120.50383 * 179.97438 * 6 5 4 35 35 H 0.97001 * 119.99940 * 0.02562 * 10 8 7 36 36 H 1.08993 * 109.47165 * 300.00009 * 13 11 10 37 37 H 1.09002 * 109.46902 * 60.00635 * 13 11 10 38 38 H 1.09003 * 109.47132 * 59.99826 * 14 13 11 39 39 H 1.08994 * 109.47523 * 180.02562 * 14 13 11 40 40 H 1.09008 * 109.47043 * 180.02562 * 15 14 13 41 41 H 1.09007 * 109.47044 * 299.99496 * 15 14 13 42 42 H 1.09002 * 109.46839 * 59.99599 * 16 15 14 43 43 H 1.08997 * 109.47651 * 180.02562 * 16 15 14 44 44 H 1.08996 * 109.47138 * 304.99544 * 19 17 11 45 45 H 1.09008 * 109.47364 * 64.99437 * 19 17 11 46 46 H 0.97002 * 120.00063 * 0.02562 * 20 19 17 47 47 H 0.96993 * 119.99942 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1996 0.0005 5 6 4.2334 0.0871 0.0015 6 6 3.6138 -1.1473 0.0016 7 6 2.2165 -1.2045 0.0005 8 6 1.5079 -2.5056 0.0001 9 8 0.2984 -2.5385 -0.1117 10 7 2.2047 -3.6525 0.1236 11 6 1.5039 -4.9391 0.1238 12 1 0.5403 -4.8277 0.6208 13 6 1.2835 -5.3999 -1.3185 14 6 0.5511 -6.7431 -1.3184 15 6 1.3916 -7.7823 -0.5736 16 6 1.6119 -7.3215 0.8686 17 6 2.3450 -5.9779 0.8683 18 1 3.3085 -6.0892 0.3712 19 6 2.5652 -5.5170 2.3104 20 7 3.4681 -6.4502 2.9888 21 6 3.8133 -6.2401 4.2972 22 1 3.4201 -5.3862 4.8289 23 6 4.6691 -7.1240 4.9398 24 7 5.1487 -8.1644 4.2916 25 14 5.1394 -6.8378 6.7248 26 1 4.4710 -5.6082 7.2218 27 1 4.7094 -8.0004 7.5426 28 1 6.6120 -6.6768 6.8292 29 1 -0.3632 -0.1134 -1.0213 30 1 -0.3633 -0.8279 0.6089 31 1 -0.3633 0.9412 0.4126 32 1 1.6692 2.1264 -0.0004 33 1 5.3121 0.1416 -0.0027 34 1 4.1994 -2.0547 0.0020 35 1 3.1702 -3.6262 0.2131 36 1 0.6844 -4.6598 -1.8489 37 1 2.2472 -5.5112 -1.8156 38 1 -0.4126 -6.6315 -0.8214 39 1 0.3945 -7.0717 -2.3458 40 1 0.8699 -8.7394 -0.5739 41 1 2.3553 -7.8940 -1.0706 42 1 0.6482 -7.2098 1.3655 43 1 2.2110 -8.0616 1.3990 44 1 3.0062 -4.5203 2.3100 45 1 1.6093 -5.4912 2.8337 46 1 3.8221 -7.2165 2.5109 47 1 5.7471 -8.7818 4.7405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:02 Heat of formation + Delta-G solvation = -9.851810 kcal Electronic energy + Delta-G solvation = -26848.487733 eV Core-core repulsion = 23223.433557 eV Total energy + Delta-G solvation = -3625.054176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96974 -39.66459 -38.13587 -34.67094 -34.48407 -33.55260 -32.32947 -31.89186 -29.71820 -29.29709 -27.47339 -25.38476 -24.75902 -23.10638 -22.75342 -21.89854 -20.73259 -20.58374 -19.84878 -18.12628 -17.21740 -16.87657 -15.86347 -15.58653 -15.42946 -15.31990 -14.84476 -14.46665 -14.28781 -14.03843 -13.81598 -13.68308 -13.60276 -13.30886 -13.07487 -12.84383 -12.79519 -12.46470 -12.42590 -11.88614 -11.75592 -11.58378 -11.14949 -10.92934 -10.90928 -10.76465 -10.49408 -10.28790 -10.18798 -10.11380 -10.02722 -9.97197 -9.68651 -9.45660 -9.18922 -8.97148 -8.87353 -6.95086 -5.80199 -3.08614 0.53077 0.84519 2.78785 3.00549 3.40854 3.47259 3.48967 3.62886 4.17867 4.38988 4.50143 4.55200 4.60397 4.74908 4.77423 4.87335 5.00974 5.14458 5.21507 5.30913 5.40280 5.45999 5.51919 5.55536 5.58559 5.59559 5.61760 5.62784 5.69541 5.84101 5.86590 6.04027 6.09620 6.13509 6.20634 6.21700 6.24828 6.34741 6.39548 6.48533 6.52166 6.64673 6.73664 6.85637 7.42184 7.67058 7.67931 8.08895 8.38919 9.50489 10.07549 10.42466 11.42657 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.003941 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.890464 B = 7102.488789 C = 9202.917934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C 0.090 3.910 4 N -0.468 5.468 5 C 0.086 3.914 6 C -0.134 4.134 7 C -0.092 4.092 8 C 0.558 3.442 9 O -0.528 6.528 10 N -0.711 5.711 11 C 0.154 3.846 12 H 0.090 0.910 13 C -0.126 4.126 14 C -0.114 4.114 15 C -0.122 4.122 16 C -0.106 4.106 17 C -0.100 4.100 18 H 0.075 0.925 19 C 0.159 3.841 20 N -0.730 5.730 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.141 0.859 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.017 0.983 45 H 0.018 0.982 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 11.811 -14.352 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.067 4.067 4 N -0.176 5.176 5 C -0.070 4.070 6 C -0.154 4.154 7 C -0.103 4.103 8 C 0.345 3.655 9 O -0.406 6.406 10 N -0.361 5.361 11 C 0.050 3.950 12 H 0.108 0.892 13 C -0.164 4.164 14 C -0.152 4.152 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.120 4.120 18 H 0.093 0.907 19 C 0.031 3.969 20 N -0.375 5.375 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.159 0.841 35 H 0.237 0.763 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.518 12.630 -14.253 20.474 hybrid contribution 0.686 -0.955 0.955 1.515 sum -6.832 11.674 -13.298 18.969 Atomic orbital electron populations 1.20979 0.89039 1.03487 1.03767 1.21124 0.98441 0.92461 0.96080 1.22732 0.89790 0.97363 0.96846 1.67539 1.08317 1.31875 1.09897 1.22725 1.00641 0.87197 0.96416 1.22403 0.93941 1.00394 0.98686 1.20297 0.93798 0.94018 1.02224 1.18115 0.86975 0.83550 0.76875 1.90718 1.13381 1.87060 1.49413 1.46035 1.11155 1.05760 1.73136 1.21072 0.96805 0.81193 0.95927 0.89203 1.21893 1.00848 0.97320 0.96376 1.21484 0.99048 0.94507 1.00211 1.21604 0.99969 0.98065 0.96291 1.21500 1.00753 0.96343 0.95859 1.21614 0.98686 0.94494 0.97164 0.90658 1.20661 0.93761 0.93171 0.89327 1.42363 1.54859 1.29239 1.11029 1.19257 1.22289 1.07429 0.87994 0.91285 1.24714 1.00375 0.97515 0.98252 1.69662 1.36976 1.15435 1.36116 0.86147 0.77922 0.77302 0.85012 1.20595 1.21834 1.21861 0.90459 0.88503 0.91938 0.82231 0.82081 0.84141 0.76258 0.91778 0.91872 0.91853 0.92121 0.92035 0.92011 0.91992 0.90163 0.96496 0.96377 0.78204 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 8.84 36.01 0.32 -0.86 16 2 C -0.08 -0.87 5.93 -104.06 -0.62 -1.49 16 3 C 0.09 0.93 10.83 -17.59 -0.19 0.74 16 4 N -0.47 -5.33 10.33 -13.30 -0.14 -5.47 16 5 C 0.09 0.87 11.17 -17.60 -0.20 0.67 16 6 C -0.13 -1.36 9.60 -39.02 -0.37 -1.73 16 7 C -0.09 -1.10 5.91 -104.65 -0.62 -1.72 16 8 C 0.56 7.43 7.70 -12.19 -0.09 7.33 16 9 O -0.53 -8.12 13.19 5.36 0.07 -8.05 16 10 N -0.71 -8.77 4.26 -54.65 -0.23 -9.00 16 11 C 0.15 2.03 1.90 -67.92 -0.13 1.90 16 12 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 13 C -0.13 -1.45 5.49 -26.73 -0.15 -1.60 16 14 C -0.11 -1.24 5.92 -26.73 -0.16 -1.40 16 15 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 16 C -0.11 -1.56 5.08 -26.70 -0.14 -1.70 16 17 C -0.10 -1.50 1.81 -90.59 -0.16 -1.66 16 18 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 19 C 0.16 3.06 5.56 -4.04 -0.02 3.03 16 20 N -0.73 -17.76 5.33 -59.91 -0.32 -18.08 16 21 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 25 Si 0.90 22.24 29.55 -169.99 -5.02 17.21 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.20 5.95 -51.93 -0.31 0.89 16 31 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 32 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.14 1.14 6.58 -52.49 -0.35 0.79 16 35 H 0.40 4.42 6.57 -40.82 -0.27 4.15 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.38 7.18 -51.93 -0.37 1.01 16 44 H 0.02 0.33 7.30 -51.93 -0.38 -0.05 16 45 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 46 H 0.38 9.74 6.85 -40.82 -0.28 9.46 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -31.87 373.97 -9.60 -41.47 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.39 Total: 10.45 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.93 Total: -7.25 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.03 Total: -59.47 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.07 Total: -8.05 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.87 -9.60 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.618 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds