Wall clock time and date at job start Tue Mar 31 2020 11:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49609 * 2 1 4 4 N 1.31805 * 120.88934 * 180.02562 * 3 2 1 5 5 C 1.31821 * 122.04947 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.90166 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50174 * 180.02562 * 2 1 3 8 8 C 1.48151 * 120.92200 * 0.02562 * 7 2 1 9 9 O 1.21520 * 120.00018 * 353.89927 * 8 7 2 10 10 N 1.34773 * 120.00194 * 173.90280 * 8 7 2 11 11 C 1.46503 * 120.00087 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47175 * 34.99394 * 11 10 8 13 13 C 1.53008 * 109.46800 * 274.99741 * 11 10 8 14 14 C 1.52997 * 109.46868 * 299.99928 * 13 11 10 15 15 C 1.52999 * 109.47275 * 299.99866 * 14 13 11 16 16 C 1.52999 * 109.47026 * 60.00710 * 15 14 13 17 17 C 1.52999 * 109.47021 * 154.99984 * 11 10 8 18 18 H 1.09005 * 109.46593 * 179.97438 * 17 11 10 19 19 C 1.52998 * 109.47137 * 299.99619 * 17 11 10 20 20 N 1.46493 * 109.47123 * 185.00406 * 19 17 11 21 21 C 1.36937 * 120.00088 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00093 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00366 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00492 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99867 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99651 * 25 23 21 27 27 H 1.48497 * 109.47062 * 209.99825 * 25 23 21 28 28 H 1.48496 * 109.46836 * 329.99934 * 25 23 21 29 29 H 1.09004 * 109.47271 * 263.65001 * 1 2 3 30 30 H 1.09001 * 109.47409 * 23.64553 * 1 2 3 31 31 H 1.08997 * 109.46828 * 143.64974 * 1 2 3 32 32 H 1.07996 * 119.55522 * 0.03793 * 3 2 1 33 33 H 1.08003 * 119.55098 * 179.97438 * 5 4 3 34 34 H 1.07996 * 120.49928 * 180.02562 * 6 5 4 35 35 H 0.96998 * 119.99972 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46725 * 59.99918 * 13 11 10 37 37 H 1.08994 * 109.46762 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47079 * 60.00723 * 14 13 11 39 39 H 1.09000 * 109.46766 * 179.97438 * 14 13 11 40 40 H 1.09006 * 109.46926 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.47093 * 300.00118 * 15 14 13 42 42 H 1.09000 * 109.47585 * 59.99251 * 16 15 14 43 43 H 1.08994 * 109.47341 * 180.02562 * 16 15 14 44 44 H 1.09005 * 109.47131 * 304.99958 * 19 17 11 45 45 H 1.08998 * 109.47344 * 65.00175 * 19 17 11 46 46 H 0.97002 * 120.00380 * 0.02562 * 20 19 17 47 47 H 0.97000 * 120.00394 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1996 -0.0005 5 6 4.2334 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5055 -0.0017 9 8 0.2983 -2.5387 0.1097 10 7 2.2048 -3.6524 -0.1262 11 6 1.5040 -4.9389 -0.1279 12 1 0.5405 -4.8271 -0.6251 13 6 1.2832 -5.4012 1.3139 14 6 2.6357 -5.5581 2.0118 15 6 3.4769 -6.5962 1.2665 16 6 3.6977 -6.1338 -0.1752 17 6 2.3453 -5.9769 -0.8732 18 1 1.8239 -6.9343 -0.8740 19 6 2.5660 -5.5146 -2.3148 20 7 3.2682 -6.5614 -3.0613 21 6 3.5765 -6.3712 -4.3819 22 1 3.3015 -5.4496 -4.8733 23 6 4.2423 -7.3628 -5.0890 24 7 4.5382 -7.1802 -6.3585 25 14 4.7173 -8.9572 -4.2394 26 1 3.6149 -9.9418 -4.3824 27 1 5.9509 -9.5013 -4.8618 28 1 4.9637 -8.6958 -2.7985 29 1 -0.3634 -0.1137 1.0214 30 1 -0.3634 0.9414 -0.4122 31 1 -0.3633 -0.8277 -0.6091 32 1 1.6691 2.1263 0.0006 33 1 5.3121 0.1416 -0.0014 34 1 4.1995 -2.0546 -0.0002 35 1 3.1703 -3.6259 -0.2154 36 1 0.6839 -4.6616 1.8448 37 1 0.7614 -6.3582 1.3126 38 1 3.1570 -4.6009 2.0131 39 1 2.4784 -5.8870 3.0390 40 1 4.4403 -6.7083 1.7640 41 1 2.9555 -7.5534 1.2653 42 1 4.2191 -5.1766 -0.1740 43 1 4.2966 -6.8735 -0.7063 44 1 1.6024 -5.3175 -2.7848 45 1 3.1642 -4.6035 -2.3167 46 1 3.5142 -7.3896 -2.6203 47 1 5.0038 -7.8730 -6.8526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:06 Heat of formation + Delta-G solvation = -2.458227 kcal Electronic energy + Delta-G solvation = -27202.055407 eV Core-core repulsion = 23577.321841 eV Total energy + Delta-G solvation = -3624.733566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06930 -39.88479 -38.19584 -34.91742 -34.11503 -33.57209 -32.31359 -31.96744 -30.16482 -29.77107 -27.53715 -25.62793 -24.81853 -23.02213 -22.59675 -22.05997 -21.31463 -20.69422 -19.12847 -18.45409 -17.60646 -16.83347 -15.89461 -15.61604 -15.51172 -15.35810 -15.03321 -14.70331 -14.34144 -14.10538 -13.94580 -13.75343 -13.62040 -13.50602 -12.97116 -12.86557 -12.82897 -12.60265 -12.26252 -12.21042 -11.86758 -11.77608 -11.65123 -11.14888 -11.05034 -10.85760 -10.55088 -10.34475 -10.28851 -10.10489 -10.05988 -10.00785 -9.61011 -9.50671 -9.21835 -9.02189 -8.91526 -7.26984 -5.80008 -3.15932 0.50869 0.82442 2.76289 2.98030 3.32312 3.35585 3.41712 3.60770 4.15832 4.36399 4.47747 4.55125 4.58163 4.63205 4.71172 4.73098 4.76654 5.03463 5.12455 5.15364 5.36706 5.40138 5.42913 5.45685 5.50265 5.51366 5.57177 5.58166 5.59935 5.65364 5.73182 5.84371 5.90039 5.99565 6.02834 6.08738 6.14838 6.20822 6.29977 6.37034 6.41339 6.45116 6.63296 6.68928 7.37312 7.65265 7.95979 8.05525 8.38742 9.17691 9.89742 10.09379 11.38441 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013103 B = 0.003737 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.465216 B = 7491.648991 C = 8488.044525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C 0.091 3.909 4 N -0.467 5.467 5 C 0.087 3.913 6 C -0.135 4.135 7 C -0.092 4.092 8 C 0.558 3.442 9 O -0.527 6.527 10 N -0.707 5.707 11 C 0.156 3.844 12 H 0.092 0.908 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.122 4.122 16 C -0.113 4.113 17 C -0.107 4.107 18 H 0.087 0.913 19 C 0.164 3.836 20 N -0.754 5.754 21 C -0.245 4.245 22 H 0.089 0.911 23 C 0.005 3.995 24 N -0.934 5.934 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.139 0.861 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.025 0.975 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 10.743 19.720 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.066 4.066 4 N -0.176 5.176 5 C -0.069 4.069 6 C -0.155 4.155 7 C -0.103 4.103 8 C 0.345 3.655 9 O -0.405 6.405 10 N -0.359 5.359 11 C 0.051 3.949 12 H 0.110 0.890 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.126 4.126 18 H 0.105 0.895 19 C 0.037 3.963 20 N -0.400 5.400 21 C -0.375 4.375 22 H 0.107 0.893 23 C -0.191 4.191 24 N -0.582 5.582 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.602 11.583 19.556 23.190 hybrid contribution 0.641 -2.029 0.335 2.154 sum -3.961 9.555 19.891 22.419 Atomic orbital electron populations 1.20983 0.89008 1.03552 1.03754 1.21128 0.98461 0.92448 0.96011 1.22744 0.89781 0.97389 0.96732 1.67543 1.08323 1.31843 1.09865 1.22719 1.00632 0.87196 0.96397 1.22367 0.93939 1.00298 0.98921 1.20281 0.93762 0.94024 1.02227 1.18118 0.86976 0.83554 0.76865 1.90723 1.13362 1.87050 1.49363 1.46035 1.11118 1.05581 1.73182 1.20988 0.96500 0.81578 0.95789 0.88967 1.21909 0.97517 1.01727 0.95535 1.21491 0.95958 0.99281 0.98638 1.21594 0.99705 0.98804 0.95805 1.21566 0.96912 1.01735 0.94862 1.21702 0.96243 0.98765 0.95907 0.89475 1.20618 0.95633 0.91875 0.88193 1.42702 1.70374 1.17045 1.09860 1.19047 1.30864 1.02767 0.84781 0.89335 1.24671 1.00697 0.98064 0.95640 1.69702 1.46178 1.34499 1.07780 0.86557 0.78117 0.85008 0.78848 1.21081 1.21730 1.20358 0.90470 0.91903 0.88463 0.82199 0.82103 0.84358 0.76236 0.91538 0.90860 0.92278 0.92298 0.92122 0.91869 0.92435 0.90754 0.95505 0.95720 0.80625 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.84 36.01 0.32 -0.84 16 2 C -0.08 -0.85 5.93 -104.06 -0.62 -1.46 16 3 C 0.09 0.92 10.83 -17.59 -0.19 0.73 16 4 N -0.47 -5.21 10.33 -13.31 -0.14 -5.35 16 5 C 0.09 0.85 11.17 -17.60 -0.20 0.65 16 6 C -0.13 -1.31 9.60 -39.03 -0.37 -1.69 16 7 C -0.09 -1.06 5.91 -104.65 -0.62 -1.67 16 8 C 0.56 7.10 7.70 -12.19 -0.09 7.01 16 9 O -0.53 -7.83 13.19 5.35 0.07 -7.76 16 10 N -0.71 -8.14 3.57 -54.65 -0.20 -8.34 16 11 C 0.16 1.89 2.23 -67.93 -0.15 1.74 16 12 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 13 C -0.13 -1.34 5.60 -26.73 -0.15 -1.49 16 14 C -0.12 -1.10 5.76 -26.73 -0.15 -1.25 16 15 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 16 C -0.11 -1.41 4.91 -26.73 -0.13 -1.55 16 17 C -0.11 -1.46 2.02 -90.62 -0.18 -1.65 16 18 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.16 3.00 5.42 -4.05 -0.02 2.97 16 20 N -0.75 -17.20 5.13 -59.91 -0.31 -17.50 16 21 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 22 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 23 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 24 N -0.93 -29.17 13.97 55.49 0.78 -28.39 16 25 Si 0.88 21.67 27.74 -169.99 -4.71 16.95 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 31 H 0.10 1.18 5.95 -51.93 -0.31 0.87 16 32 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.14 1.06 6.58 -52.49 -0.35 0.71 16 35 H 0.40 4.15 4.85 -40.82 -0.20 3.95 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.56 7.60 -51.93 -0.39 0.16 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.67 6.51 -51.93 -0.34 0.33 16 43 H 0.07 1.10 7.18 -51.93 -0.37 0.73 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.46 7.61 -51.93 -0.40 0.06 16 46 H 0.36 7.96 4.71 -40.82 -0.19 7.77 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -32.95 366.74 -9.14 -42.09 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.18 Total: 9.61 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.98 Total: -6.84 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.13 Total: -59.58 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.07 Total: -7.76 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.95 -9.14 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.629 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds