Wall clock time and date at job start Tue Mar 31 2020 11:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38176 * 120.50078 * 2 1 4 4 N 1.31789 * 120.89525 * 179.97438 * 3 2 1 5 5 C 1.31833 * 122.05139 * 0.02562 * 4 3 2 6 6 C 1.38125 * 120.89296 * 359.73876 * 5 4 3 7 7 C 1.39792 * 120.50044 * 179.97438 * 2 1 3 8 8 C 1.48151 * 120.92157 * 359.97438 * 7 2 1 9 9 O 1.21510 * 120.00026 * 354.16655 * 8 7 2 10 10 N 1.34782 * 119.99890 * 174.15774 * 8 7 2 11 11 C 1.46503 * 119.99579 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47114 * 324.99975 * 11 10 8 13 13 C 1.52991 * 109.47206 * 85.00527 * 11 10 8 14 14 C 1.52999 * 109.47841 * 59.99473 * 13 11 10 15 15 C 1.53008 * 109.46732 * 59.99840 * 14 13 11 16 16 C 1.52996 * 109.46913 * 300.00330 * 15 14 13 17 17 C 1.52996 * 109.47192 * 60.00397 * 16 15 14 18 18 H 1.08996 * 109.47455 * 59.99578 * 17 16 15 19 19 C 1.53005 * 109.46960 * 179.97438 * 17 16 15 20 20 N 1.46498 * 109.47188 * 294.99693 * 19 17 16 21 21 C 1.36938 * 120.00020 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99835 * 0.02562 * 21 20 19 23 23 C 1.38819 * 119.99907 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99796 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99724 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47450 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46854 * 120.00298 * 25 23 21 28 28 H 1.48497 * 109.47067 * 239.99924 * 25 23 21 29 29 H 1.08994 * 109.46899 * 263.75344 * 1 2 3 30 30 H 1.08999 * 109.46768 * 23.75721 * 1 2 3 31 31 H 1.08992 * 109.46736 * 143.75321 * 1 2 3 32 32 H 1.07997 * 119.54996 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.54972 * 179.97438 * 5 4 3 34 34 H 1.08006 * 120.49858 * 180.28664 * 6 5 4 35 35 H 0.96999 * 120.00186 * 0.28115 * 10 8 7 36 36 H 1.09006 * 109.47032 * 179.97438 * 13 11 10 37 37 H 1.09007 * 109.47242 * 299.99566 * 13 11 10 38 38 H 1.09004 * 109.46763 * 300.00744 * 14 13 11 39 39 H 1.08997 * 109.47662 * 179.97438 * 14 13 11 40 40 H 1.09000 * 109.46881 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.47039 * 60.00327 * 15 14 13 42 42 H 1.08996 * 109.47266 * 299.99858 * 16 15 14 43 43 H 1.09002 * 109.46677 * 180.02562 * 16 15 14 44 44 H 1.08996 * 109.47101 * 54.99647 * 19 17 16 45 45 H 1.09009 * 109.46984 * 174.99980 * 19 17 16 46 46 H 0.96998 * 120.00059 * 359.97438 * 20 19 17 47 47 H 0.96999 * 119.99845 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1906 0.0000 4 7 3.5262 1.1996 0.0005 5 6 4.2335 0.0871 0.0005 6 6 3.6137 -1.1473 0.0054 7 6 2.2166 -1.2045 0.0005 8 6 1.5079 -2.5055 0.0017 9 8 0.2980 -2.5382 0.1091 10 7 2.2052 -3.6528 -0.1166 11 6 1.5043 -4.9393 -0.1160 12 1 0.6478 -4.8861 0.5560 13 6 1.0221 -5.2580 -1.5326 14 6 2.2243 -5.3327 -2.4760 15 6 3.1770 -6.4322 -2.0020 16 6 3.6592 -6.1134 -0.5855 17 6 2.4569 -6.0388 0.3578 18 1 1.9355 -6.9959 0.3583 19 6 2.9393 -5.7206 1.7746 20 7 3.7550 -6.8305 2.2735 21 6 4.2998 -6.7697 3.5284 22 1 4.1276 -5.9037 4.1504 23 6 5.0723 -7.8216 4.0014 24 7 5.2816 -8.8771 3.2434 25 14 5.8148 -7.7390 5.7135 26 1 5.4327 -6.4567 6.3575 27 1 5.3073 -8.8721 6.5283 28 1 7.2942 -7.8230 5.6160 29 1 -0.3633 -0.1118 1.0215 30 1 -0.3633 0.9406 -0.4140 31 1 -0.3632 -0.8287 -0.6076 32 1 1.6692 2.1263 -0.0004 33 1 5.3121 0.1417 0.0005 34 1 4.1995 -2.0547 0.0101 35 1 3.1714 -3.6269 -0.1984 36 1 0.5010 -6.2154 -1.5322 37 1 0.3434 -4.4747 -1.8703 38 1 2.7458 -4.3755 -2.4764 39 1 1.8808 -5.5602 -3.4851 40 1 4.0337 -6.4851 -2.6738 41 1 2.6555 -7.3893 -2.0015 42 1 4.1806 -5.1562 -0.5859 43 1 4.3382 -6.8965 -0.2480 44 1 3.5366 -4.8091 1.7588 45 1 2.0785 -5.5798 2.4284 46 1 3.9093 -7.6083 1.7150 47 1 5.8217 -9.6120 3.5738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:10 Heat of formation + Delta-G solvation = -6.869060 kcal Electronic energy + Delta-G solvation = -27130.475106 eV Core-core repulsion = 23505.550272 eV Total energy + Delta-G solvation = -3624.924834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03392 -39.81883 -38.11704 -34.71688 -34.05525 -33.55830 -32.27428 -31.90832 -29.90412 -29.44776 -27.51597 -25.39405 -24.76530 -23.07011 -22.74806 -22.04245 -21.29568 -20.57883 -19.02075 -18.38777 -17.16615 -16.79030 -15.75980 -15.63306 -15.44021 -15.33337 -14.97562 -14.63779 -14.39495 -13.96187 -13.82209 -13.61810 -13.59310 -13.30442 -13.11476 -12.86386 -12.79991 -12.52093 -12.15968 -12.01377 -11.77748 -11.68515 -11.46749 -10.93739 -10.92199 -10.77596 -10.42199 -10.29899 -10.21538 -10.05393 -10.00652 -9.90882 -9.67170 -9.47126 -9.19247 -8.98384 -8.88163 -6.95302 -5.80242 -3.08620 0.52364 0.83266 2.79626 3.03018 3.40898 3.47266 3.49007 3.61888 4.16647 4.40130 4.49646 4.55280 4.59293 4.73992 4.79376 4.83725 4.87435 5.14122 5.19490 5.27822 5.38907 5.43939 5.53162 5.55275 5.57545 5.59611 5.60422 5.63319 5.69558 5.76855 5.85595 5.98262 6.08555 6.10611 6.16930 6.18855 6.22608 6.32325 6.38678 6.42639 6.51081 6.62646 6.75487 6.81441 7.42967 7.65900 7.67823 8.10003 8.38852 9.50435 10.07535 10.42376 11.42634 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.003729 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.925076 B = 7506.044176 C = 8851.129647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C 0.090 3.910 4 N -0.468 5.468 5 C 0.086 3.914 6 C -0.134 4.134 7 C -0.092 4.092 8 C 0.557 3.443 9 O -0.528 6.528 10 N -0.705 5.705 11 C 0.155 3.845 12 H 0.090 0.910 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.110 4.110 17 C -0.102 4.102 18 H 0.087 0.913 19 C 0.160 3.840 20 N -0.730 5.730 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.401 0.599 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.016 0.984 45 H 0.018 0.982 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 14.894 -13.208 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.067 4.067 4 N -0.176 5.176 5 C -0.070 4.070 6 C -0.155 4.155 7 C -0.103 4.103 8 C 0.344 3.656 9 O -0.406 6.406 10 N -0.357 5.357 11 C 0.051 3.949 12 H 0.108 0.892 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.122 4.122 18 H 0.106 0.894 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.158 0.842 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.034 0.966 45 H 0.036 0.964 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.120 15.684 -12.958 21.555 hybrid contribution 0.729 -1.120 0.849 1.584 sum -6.391 14.564 -12.109 19.990 Atomic orbital electron populations 1.20979 0.89043 1.03302 1.03948 1.21127 0.98435 0.92458 0.96104 1.22730 0.89794 0.97360 0.96859 1.67540 1.08314 1.31861 1.09912 1.22728 1.00638 0.87188 0.96419 1.22404 0.93974 1.00371 0.98734 1.20303 0.93768 0.94065 1.02155 1.18119 0.87015 0.83600 0.76899 1.90716 1.13396 1.87034 1.49479 1.46051 1.11020 1.05600 1.73078 1.21020 0.95484 0.81574 0.96867 0.89178 1.21904 0.97823 1.02066 0.94846 1.21499 0.96445 0.99098 0.98329 1.21591 0.98790 0.98654 0.96826 1.21533 0.97539 1.02110 0.93620 1.21644 0.96049 0.98155 0.96314 0.89445 1.20639 0.93761 0.91802 0.90568 1.42364 1.59712 1.18889 1.16535 1.19261 1.24099 1.01961 0.91689 0.91273 1.24719 1.01074 0.96678 0.98397 1.69660 1.43958 1.08019 1.36532 0.86141 0.78736 0.77239 0.84238 1.20592 1.21844 1.21852 0.90316 0.92014 0.88571 0.82246 0.82084 0.84226 0.76238 0.90846 0.91717 0.92401 0.92400 0.92208 0.91802 0.92880 0.90137 0.96573 0.96428 0.78193 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.84 36.01 0.32 -0.83 16 2 C -0.08 -0.86 5.93 -104.06 -0.62 -1.47 16 3 C 0.09 0.91 10.83 -17.59 -0.19 0.72 16 4 N -0.47 -5.24 10.33 -13.31 -0.14 -5.38 16 5 C 0.09 0.86 11.17 -17.59 -0.20 0.66 16 6 C -0.13 -1.36 9.60 -39.03 -0.37 -1.73 16 7 C -0.09 -1.08 5.91 -104.65 -0.62 -1.69 16 8 C 0.56 7.31 7.70 -12.19 -0.09 7.22 16 9 O -0.53 -8.06 13.19 5.36 0.07 -7.99 16 10 N -0.71 -8.53 3.58 -54.65 -0.20 -8.73 16 11 C 0.16 2.00 2.23 -67.93 -0.15 1.85 16 12 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 13 C -0.13 -1.44 5.60 -26.74 -0.15 -1.59 16 14 C -0.12 -1.20 5.77 -26.73 -0.15 -1.35 16 15 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 16 C -0.11 -1.50 4.90 -26.73 -0.13 -1.63 16 17 C -0.10 -1.51 2.02 -90.62 -0.18 -1.69 16 18 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 19 C 0.16 3.06 5.42 -4.04 -0.02 3.04 16 20 N -0.73 -17.76 5.33 -59.90 -0.32 -18.07 16 21 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 25 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.45 8.06 -51.93 -0.42 0.04 16 31 H 0.10 1.12 5.94 -51.93 -0.31 0.81 16 32 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.14 1.17 6.58 -52.48 -0.35 0.82 16 35 H 0.40 4.40 4.84 -40.82 -0.20 4.20 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.67 6.51 -51.93 -0.34 0.33 16 43 H 0.08 1.32 7.18 -51.93 -0.37 0.95 16 44 H 0.02 0.31 7.60 -51.93 -0.39 -0.08 16 45 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 46 H 0.38 9.73 6.85 -40.82 -0.28 9.45 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -31.76 369.84 -9.49 -41.26 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.22 Total: 10.29 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.97 Total: -7.21 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.07 Total: -59.13 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.07 Total: -7.99 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.76 -9.49 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.386 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds