Wall clock time and date at job start Tue Mar 31 2020 12:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 C 1.50699 * 109.47359 * 119.99914 * 2 1 3 5 5 C 1.38354 * 119.46132 * 275.02390 * 4 2 1 6 6 C 1.38360 * 119.30029 * 179.97438 * 5 4 2 7 7 C 1.40027 * 118.29024 * 359.97438 * 6 5 4 8 8 C 1.47835 * 120.55845 * 180.02562 * 7 6 5 9 9 O 1.21555 * 119.99957 * 343.37636 * 8 7 6 10 10 N 1.34778 * 119.99949 * 163.37244 * 8 7 6 11 11 C 1.47423 * 125.64665 * 186.04953 * 10 8 7 12 12 C 1.54915 * 104.82963 * 204.09157 * 11 10 8 13 13 C 1.55155 * 101.58114 * 322.99189 * 12 11 10 14 14 H 1.09000 * 110.71933 * 154.04628 * 13 12 11 15 15 N 1.46502 * 110.72025 * 277.13801 * 13 12 11 16 16 C 1.36935 * 120.00243 * 209.41155 * 15 13 12 17 17 H 1.08010 * 119.99550 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00647 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99389 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00415 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47000 * 60.00123 * 20 18 16 22 22 H 1.48498 * 109.46855 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46700 * 299.99971 * 20 18 16 24 24 C 1.47022 * 125.64603 * 5.74178 * 10 8 7 25 25 H 1.08997 * 109.87996 * 59.56295 * 24 10 8 26 26 C 1.52998 * 109.88097 * 298.39205 * 24 10 8 27 27 C 1.39521 * 118.87769 * 0.02562 * 7 6 5 28 28 N 1.31687 * 120.57214 * 0.02562 * 27 7 6 29 29 H 1.09005 * 109.47511 * 299.99969 * 1 2 3 30 30 H 1.08996 * 109.47445 * 59.99938 * 1 2 3 31 31 H 1.08998 * 109.47541 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47573 * 240.00426 * 2 1 3 33 33 H 1.08996 * 109.47355 * 299.99806 * 3 2 1 34 34 H 1.09006 * 109.47190 * 60.00455 * 3 2 1 35 35 H 1.09000 * 109.47094 * 180.02562 * 3 2 1 36 36 H 1.07996 * 120.35003 * 359.97438 * 5 4 2 37 37 H 1.07995 * 120.85422 * 180.27358 * 6 5 4 38 38 H 1.09001 * 110.36898 * 322.93064 * 11 10 8 39 39 H 1.09002 * 110.36804 * 85.14541 * 11 10 8 40 40 H 1.08995 * 111.00218 * 81.06645 * 12 11 10 41 41 H 1.09001 * 110.99966 * 204.87990 * 12 11 10 42 42 H 0.97001 * 120.00128 * 29.41000 * 15 13 12 43 43 H 0.96995 * 119.99774 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.47441 * 44.86397 * 26 24 10 45 45 H 1.09002 * 109.46798 * 164.85774 * 26 24 10 46 46 H 1.09000 * 109.47565 * 284.85659 * 26 24 10 47 47 H 1.08007 * 119.71056 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.1597 -0.0095 2.4165 6 6 2.6208 -0.6651 3.5443 7 6 2.9418 -2.0239 3.4373 8 6 3.4382 -2.7736 4.6108 9 8 3.8567 -2.1745 5.5821 10 7 3.4268 -4.1213 4.6036 11 6 3.7712 -4.9895 5.7442 12 6 4.2048 -6.3318 5.1040 13 6 3.2237 -6.4371 3.9065 14 1 3.6524 -7.0440 3.1090 15 7 1.9361 -6.9865 4.3382 16 6 1.1720 -7.7100 3.4619 17 1 1.5185 -7.8753 2.4524 18 6 -0.0479 -8.2311 3.8710 19 7 -0.4703 -8.0292 5.1012 20 14 -1.0905 -9.2174 2.6754 21 1 -0.3277 -10.4066 2.2180 22 1 -2.3365 -9.6582 3.3524 23 1 -1.4362 -8.3709 1.5053 24 6 3.0626 -4.9689 3.4589 25 1 3.7274 -4.7641 2.6197 26 6 1.6115 -4.7017 3.0544 27 6 2.7852 -2.6582 2.2045 28 7 2.3434 -1.9904 1.1590 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8901 35 1 3.1299 1.4426 -0.0005 36 1 1.9020 1.0383 2.4615 37 1 2.7257 -0.1435 4.4841 38 1 4.5937 -4.5580 6.3146 39 1 2.9019 -5.1363 6.3852 40 1 5.2378 -6.2848 4.7597 41 1 4.0641 -7.1596 5.7990 42 1 1.6247 -6.8378 5.2448 43 1 -1.3229 -8.3930 5.3870 44 1 1.4312 -3.6269 3.0368 45 1 1.4282 -5.1169 2.0634 46 1 0.9412 -5.1708 3.7746 47 1 3.0284 -3.7060 2.1069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986359708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:57 Heat of formation + Delta-G solvation = 45.441444 kcal Electronic energy + Delta-G solvation = -27460.219935 eV Core-core repulsion = 23837.563455 eV Total energy + Delta-G solvation = -3622.656480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08672 -39.46293 -37.59337 -35.79828 -34.05234 -32.50369 -32.34026 -31.35196 -29.46641 -28.87497 -27.41307 -25.71164 -24.64717 -23.51047 -23.46931 -22.29545 -20.68523 -20.05439 -19.25379 -17.74501 -17.11873 -16.54453 -16.33454 -15.70199 -15.09294 -14.87361 -14.67226 -14.54303 -14.13943 -13.88522 -13.54995 -13.51408 -13.27537 -13.05854 -13.00056 -12.62682 -12.50379 -12.31231 -12.19006 -11.63595 -11.40426 -11.32304 -11.27342 -11.14061 -10.97700 -10.85303 -10.69498 -10.54551 -10.38171 -10.17557 -10.00729 -9.83751 -9.72114 -9.29923 -9.01186 -8.73951 -8.31585 -7.11639 -5.88944 -3.20047 0.72086 1.26806 2.96446 3.20918 3.37597 3.42958 3.43710 3.87487 4.05290 4.48089 4.52065 4.61834 4.79357 4.89393 4.92927 5.02370 5.04817 5.08840 5.13078 5.31809 5.37207 5.45976 5.47464 5.55028 5.57374 5.59601 5.66623 5.71769 5.75553 5.76898 5.93960 6.00328 6.05215 6.06754 6.10376 6.16122 6.23568 6.31654 6.45992 6.52224 6.58743 6.63959 6.68470 7.27316 7.59390 7.79329 7.93586 8.27530 8.34238 9.40214 9.92275 10.27490 11.32482 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.004200 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.168259 B = 6665.794632 C = 8368.303693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C -0.147 4.147 4 C 0.155 3.845 5 C -0.192 4.192 6 C -0.016 4.016 7 C -0.196 4.196 8 C 0.577 3.423 9 O -0.552 6.552 10 N -0.597 5.597 11 C 0.111 3.889 12 C -0.146 4.146 13 C 0.173 3.827 14 H 0.079 0.921 15 N -0.707 5.707 16 C -0.247 4.247 17 H 0.073 0.927 18 C -0.006 4.006 19 N -0.928 5.928 20 Si 0.906 3.094 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.086 3.914 25 H 0.072 0.928 26 C -0.166 4.166 27 C 0.130 3.870 28 N -0.493 5.493 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.713 14.739 -7.259 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 C -0.205 4.205 4 C 0.018 3.982 5 C -0.211 4.211 6 C -0.042 4.042 7 C -0.201 4.201 8 C 0.366 3.634 9 O -0.431 6.431 10 N -0.329 5.329 11 C -0.011 4.011 12 C -0.185 4.185 13 C 0.060 3.940 14 H 0.097 0.903 15 N -0.346 5.346 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.736 3.264 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.211 1.211 24 C -0.021 4.021 25 H 0.089 0.911 26 C -0.223 4.223 27 C -0.026 4.026 28 N -0.202 5.202 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.119 0.881 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 6.725 14.551 -7.648 17.761 hybrid contribution -0.776 -0.032 0.527 0.939 sum 5.949 14.519 -7.121 17.231 Atomic orbital electron populations 1.21802 0.93394 1.02708 1.02057 1.20092 0.96365 0.95312 0.95058 1.21929 1.01347 0.94904 1.02302 1.21475 0.92076 0.90134 0.94556 1.21861 1.04337 1.01740 0.93193 1.21639 0.91123 0.92492 0.98984 1.20914 1.07483 0.95721 0.95998 1.17654 0.78353 0.80839 0.86520 1.90731 1.48311 1.68241 1.35856 1.48426 1.65598 1.04127 1.14714 1.22206 1.00328 0.89776 0.88796 1.23178 0.99261 0.96558 0.99472 1.21222 0.87912 0.89776 0.95102 0.90311 1.42404 1.17124 1.61313 1.13722 1.19154 0.99182 1.25568 0.93874 0.90933 1.24741 0.98062 1.01024 0.96426 1.69647 1.21891 1.49660 1.16324 0.86300 0.79840 0.80080 0.80153 1.21154 1.21734 1.21123 1.23121 0.96462 0.94898 0.87571 0.91117 1.22603 0.96199 0.99490 1.04042 1.24672 0.89543 1.01526 0.86886 1.67684 1.12831 1.08151 1.31556 0.92483 0.91845 0.91979 0.89064 0.91821 0.92099 0.92357 0.84382 0.84021 0.90975 0.91115 0.90926 0.89278 0.77900 0.93278 0.93732 0.91507 0.88148 0.79038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.17 37.15 0.34 -0.94 16 2 C -0.05 -0.48 3.23 -91.77 -0.30 -0.77 16 3 C -0.15 -1.09 8.62 37.16 0.32 -0.77 16 4 C 0.15 1.96 5.79 -82.51 -0.48 1.48 16 5 C -0.19 -2.27 9.16 -39.49 -0.36 -2.63 16 6 C -0.02 -0.22 9.71 -38.87 -0.38 -0.60 16 7 C -0.20 -3.10 5.08 -104.82 -0.53 -3.63 16 8 C 0.58 10.21 7.62 -12.33 -0.09 10.12 16 9 O -0.55 -11.01 16.77 5.32 0.09 -10.92 16 10 N -0.60 -9.96 3.06 -164.11 -0.50 -10.46 16 11 C 0.11 1.76 6.87 -2.53 -0.02 1.75 16 12 C -0.15 -2.14 6.69 -24.58 -0.16 -2.30 16 13 C 0.17 2.98 3.54 -66.09 -0.23 2.74 16 14 H 0.08 1.31 8.06 -51.93 -0.42 0.90 16 15 N -0.71 -15.49 3.54 -51.64 -0.18 -15.68 16 16 C -0.25 -6.12 8.75 -15.06 -0.13 -6.25 16 17 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 19 N -0.93 -26.29 13.06 55.49 0.72 -25.57 16 20 Si 0.91 21.20 29.55 -169.99 -5.02 16.17 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.09 1.38 2.71 -66.95 -0.18 1.20 16 25 H 0.07 1.01 6.17 -51.93 -0.32 0.69 16 26 C -0.17 -3.00 6.98 37.16 0.26 -2.74 16 27 C 0.13 1.98 7.44 -17.14 -0.13 1.86 16 28 N -0.49 -7.32 10.25 -9.14 -0.09 -7.41 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.41 6.48 -51.93 -0.34 0.07 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.14 1.23 6.29 -52.49 -0.33 0.90 16 37 H 0.14 1.84 7.82 -52.49 -0.41 1.42 16 38 H 0.07 1.10 7.98 -51.93 -0.41 0.68 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.39 9.29 7.84 -40.82 -0.32 8.97 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 44 H 0.04 0.79 4.25 -51.93 -0.22 0.57 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.10 2.21 6.19 -51.93 -0.32 1.89 16 47 H 0.19 2.86 2.64 -52.48 -0.14 2.72 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -29.62 365.74 -8.66 -38.28 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.01 Total: 11.81 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -2.17 Total: -1.73 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.05 Total: -59.12 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.62 -8.66 -38.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986359708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.721 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds