Wall clock time and date at job start Tue Mar 31 2020 12:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 C 1.50699 * 109.47359 * 119.99914 * 2 1 3 5 5 C 1.38354 * 119.46132 * 275.02390 * 4 2 1 6 6 C 1.38360 * 119.30029 * 179.97438 * 5 4 2 7 7 C 1.40027 * 118.29024 * 359.97438 * 6 5 4 8 8 C 1.47835 * 120.55845 * 180.02562 * 7 6 5 9 9 O 1.21555 * 119.99957 * 343.37636 * 8 7 6 10 10 N 1.34778 * 119.99949 * 163.37244 * 8 7 6 11 11 C 1.47423 * 125.64665 * 186.04953 * 10 8 7 12 12 C 1.54915 * 104.82963 * 204.09157 * 11 10 8 13 13 C 1.55155 * 101.58114 * 322.99189 * 12 11 10 14 14 H 1.09000 * 110.71933 * 154.04628 * 13 12 11 15 15 N 1.46502 * 110.72025 * 277.13801 * 13 12 11 16 16 C 1.36935 * 120.00243 * 209.41155 * 15 13 12 17 17 H 1.08010 * 119.99550 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00647 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99389 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00415 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47000 * 60.00123 * 20 18 16 22 22 H 1.48498 * 109.46855 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46700 * 299.99971 * 20 18 16 24 24 C 1.47022 * 125.64603 * 5.74178 * 10 8 7 25 25 H 1.08997 * 109.87996 * 59.56295 * 24 10 8 26 26 C 1.52998 * 109.88097 * 298.39205 * 24 10 8 27 27 C 1.39521 * 118.87769 * 0.02562 * 7 6 5 28 28 N 1.31687 * 120.57214 * 0.02562 * 27 7 6 29 29 H 1.09005 * 109.47511 * 299.99969 * 1 2 3 30 30 H 1.08996 * 109.47445 * 59.99938 * 1 2 3 31 31 H 1.08998 * 109.47541 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47573 * 240.00426 * 2 1 3 33 33 H 1.08996 * 109.47355 * 299.99806 * 3 2 1 34 34 H 1.09006 * 109.47190 * 60.00455 * 3 2 1 35 35 H 1.09000 * 109.47094 * 180.02562 * 3 2 1 36 36 H 1.07996 * 120.35003 * 359.97438 * 5 4 2 37 37 H 1.07995 * 120.85422 * 180.27358 * 6 5 4 38 38 H 1.09001 * 110.36898 * 322.93064 * 11 10 8 39 39 H 1.09002 * 110.36804 * 85.14541 * 11 10 8 40 40 H 1.08995 * 111.00218 * 81.06645 * 12 11 10 41 41 H 1.09001 * 110.99966 * 204.87990 * 12 11 10 42 42 H 0.97001 * 120.00128 * 29.41000 * 15 13 12 43 43 H 0.96995 * 119.99774 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.47441 * 44.86397 * 26 24 10 45 45 H 1.09002 * 109.46798 * 164.85774 * 26 24 10 46 46 H 1.09000 * 109.47565 * 284.85659 * 26 24 10 47 47 H 1.08007 * 119.71056 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.1597 -0.0095 2.4165 6 6 2.6208 -0.6651 3.5443 7 6 2.9418 -2.0239 3.4373 8 6 3.4382 -2.7736 4.6108 9 8 3.8567 -2.1745 5.5821 10 7 3.4268 -4.1213 4.6036 11 6 3.7712 -4.9895 5.7442 12 6 4.2048 -6.3318 5.1040 13 6 3.2237 -6.4371 3.9065 14 1 3.6524 -7.0440 3.1090 15 7 1.9361 -6.9865 4.3382 16 6 1.1720 -7.7100 3.4619 17 1 1.5185 -7.8753 2.4524 18 6 -0.0479 -8.2311 3.8710 19 7 -0.4703 -8.0292 5.1012 20 14 -1.0905 -9.2174 2.6754 21 1 -0.3277 -10.4066 2.2180 22 1 -2.3365 -9.6582 3.3524 23 1 -1.4362 -8.3709 1.5053 24 6 3.0626 -4.9689 3.4589 25 1 3.7274 -4.7641 2.6197 26 6 1.6115 -4.7017 3.0544 27 6 2.7852 -2.6582 2.2045 28 7 2.3434 -1.9904 1.1590 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8901 35 1 3.1299 1.4426 -0.0005 36 1 1.9020 1.0383 2.4615 37 1 2.7257 -0.1435 4.4841 38 1 4.5937 -4.5580 6.3146 39 1 2.9019 -5.1363 6.3852 40 1 5.2378 -6.2848 4.7597 41 1 4.0641 -7.1596 5.7990 42 1 1.6247 -6.8378 5.2448 43 1 -1.3229 -8.3930 5.3870 44 1 1.4312 -3.6269 3.0368 45 1 1.4282 -5.1169 2.0634 46 1 0.9412 -5.1708 3.7746 47 1 3.0284 -3.7060 2.1069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986359708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:56 Heat of formation + Delta-G solvation = 28.039929 kcal Electronic energy + Delta-G solvation = -27460.974521 eV Core-core repulsion = 23837.563455 eV Total energy + Delta-G solvation = -3623.411066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.29540 -40.66807 -39.02683 -36.68861 -35.76077 -33.65515 -33.58096 -33.00934 -30.63286 -30.46805 -28.04847 -27.16280 -25.79574 -25.33233 -24.56268 -23.50740 -21.66098 -21.39591 -20.55095 -19.38229 -18.57124 -17.77440 -17.38582 -17.00406 -16.49473 -16.38257 -15.85476 -15.71391 -15.37710 -15.25714 -14.87314 -14.69530 -14.66413 -14.23978 -14.05264 -13.86833 -13.61999 -13.52994 -13.11371 -12.98015 -12.87637 -12.67308 -12.45713 -12.31981 -12.24435 -12.14742 -12.00392 -11.89198 -11.82374 -11.73171 -11.54899 -11.29105 -10.94717 -10.86634 -10.43792 -9.90679 -9.65344 -8.97333 -7.89761 -5.17842 -0.40070 0.19855 1.51755 1.52442 1.57761 1.66550 1.91727 2.59244 2.75084 3.06242 3.36645 3.42630 3.57769 3.73511 3.81034 3.82753 3.89321 3.98470 4.13240 4.16729 4.22438 4.26967 4.30613 4.38283 4.52675 4.57445 4.66398 4.73638 4.79809 4.81884 4.89524 4.92141 4.94155 4.99694 5.03785 5.09770 5.20159 5.21328 5.26950 5.32155 5.36043 5.42182 5.57063 5.59712 5.67563 6.30377 6.43602 6.85047 6.98605 7.38935 8.10418 8.33770 9.32916 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.004200 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.168259 B = 6665.794632 C = 8368.303693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C -0.143 4.143 4 C 0.151 3.849 5 C -0.180 4.180 6 C -0.023 4.023 7 C -0.217 4.217 8 C 0.574 3.426 9 O -0.581 6.581 10 N -0.597 5.597 11 C 0.109 3.891 12 C -0.129 4.129 13 C 0.164 3.836 14 H 0.094 0.906 15 N -0.716 5.716 16 C -0.226 4.226 17 H 0.083 0.917 18 C -0.069 4.069 19 N -0.968 5.968 20 Si 0.960 3.040 21 H -0.277 1.277 22 H -0.305 1.305 23 H -0.281 1.281 24 C 0.095 3.905 25 H 0.101 0.899 26 C -0.152 4.152 27 C 0.126 3.874 28 N -0.511 5.511 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.173 0.827 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.373 0.627 43 H 0.247 0.753 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.835 16.373 -9.289 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.201 4.201 4 C 0.014 3.986 5 C -0.199 4.199 6 C -0.049 4.049 7 C -0.222 4.222 8 C 0.364 3.636 9 O -0.463 6.463 10 N -0.328 5.328 11 C -0.013 4.013 12 C -0.167 4.167 13 C 0.053 3.947 14 H 0.112 0.888 15 N -0.353 5.353 16 C -0.358 4.358 17 H 0.101 0.899 18 C -0.261 4.261 19 N -0.619 5.619 20 Si 0.791 3.209 21 H -0.203 1.203 22 H -0.232 1.232 23 H -0.207 1.207 24 C -0.010 4.010 25 H 0.118 0.882 26 C -0.210 4.210 27 C -0.031 4.031 28 N -0.220 5.220 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.190 0.810 37 H 0.165 0.835 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.105 0.895 42 H 0.205 0.795 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.896 16.185 -9.725 20.466 hybrid contribution -1.069 -0.408 1.087 1.579 sum 6.827 15.776 -8.637 19.238 Atomic orbital electron populations 1.21799 0.92823 1.01705 1.03414 1.20207 0.96685 0.96503 0.93361 1.21923 1.01218 0.93167 1.03771 1.22091 0.90863 0.89586 0.96080 1.22200 1.02589 1.03161 0.91952 1.21855 0.91050 0.91941 1.00056 1.20873 1.09229 0.96615 0.95492 1.17995 0.77831 0.80987 0.86765 1.90702 1.49778 1.68751 1.37084 1.48484 1.65213 1.04155 1.14955 1.22236 0.99842 0.90525 0.88731 1.23096 1.00100 0.95526 0.98022 1.21508 0.86450 0.90045 0.96653 0.88827 1.42522 1.18627 1.61387 1.12771 1.19525 0.98678 1.23238 0.94324 0.89882 1.25389 0.99771 1.03312 0.97673 1.69800 1.21979 1.51943 1.18148 0.85403 0.78038 0.79113 0.78359 1.20341 1.23157 1.20738 1.22991 0.95829 0.93945 0.88250 0.88169 1.22419 0.96672 0.99331 1.02550 1.24556 0.90039 1.01582 0.86901 1.67716 1.13436 1.09421 1.31475 0.92000 0.89668 0.94140 0.89482 0.90034 0.91023 0.92562 0.80975 0.83454 0.90062 0.93141 0.87721 0.89459 0.79459 0.94393 0.93377 0.91634 0.92285 0.79258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.17 71.98 0.66 -1.54 16 2 C -0.05 -0.82 3.23 -11.54 -0.04 -0.85 16 3 C -0.14 -1.60 8.62 71.98 0.62 -0.98 16 4 C 0.15 3.52 5.79 42.57 0.25 3.77 16 5 C -0.18 -3.82 9.16 22.33 0.20 -3.62 16 6 C -0.02 -0.61 9.71 22.73 0.22 -0.38 16 7 C -0.22 -6.72 5.08 -19.99 -0.10 -6.82 16 8 C 0.57 20.18 7.62 86.78 0.66 20.84 16 9 O -0.58 -23.24 16.77 -3.89 -0.07 -23.30 16 10 N -0.60 -19.63 3.06 -791.41 -2.42 -22.06 16 11 C 0.11 3.41 6.87 86.86 0.60 4.01 16 12 C -0.13 -3.56 6.69 31.99 0.21 -3.34 16 13 C 0.16 5.44 3.54 46.18 0.16 5.60 16 14 H 0.09 2.87 8.06 -2.39 -0.02 2.85 16 15 N -0.72 -31.50 3.54 -317.30 -1.12 -32.62 16 16 C -0.23 -11.15 8.75 84.03 0.74 -10.42 16 17 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 19 N -0.97 -56.62 13.06 21.65 0.28 -56.34 16 20 Si 0.96 44.10 29.55 68.60 2.03 46.13 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 C 0.10 2.98 2.71 45.34 0.12 3.10 16 25 H 0.10 2.64 6.17 -2.39 -0.01 2.62 16 26 C -0.15 -5.51 6.98 71.98 0.50 -5.01 16 27 C 0.13 3.72 7.44 85.02 0.63 4.35 16 28 N -0.51 -14.56 10.25 -182.82 -1.87 -16.43 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.66 6.48 -2.38 -0.02 0.64 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.17 2.41 6.29 -2.91 -0.02 2.39 16 37 H 0.15 3.67 7.82 -2.91 -0.02 3.64 16 38 H 0.08 2.41 7.98 -2.39 -0.02 2.39 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.27 16 41 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.37 18.45 7.84 -92.71 -0.73 17.72 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.05 1.71 4.25 -2.39 -0.01 1.70 16 45 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.06 2.67 6.19 -2.39 -0.01 2.65 16 47 H 0.19 5.44 2.64 -2.91 -0.01 5.43 16 Total: -1.00 -65.53 365.74 2.99 -62.54 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.26 Total: 36.62 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.91 Total: 5.46 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -5.14 Total: -127.44 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.07 Total: -23.30 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -65.53 2.99 -62.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986359708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.580 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds