Wall clock time and date at job start Tue Mar 31 2020 12:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.70466 * 2 1 4 4 C 1.53625 * 109.66597 * 120.60120 * 2 1 3 5 5 C 1.53038 * 109.24161 * 174.54640 * 4 2 1 6 6 H 1.09005 * 109.44934 * 58.52163 * 5 4 2 7 7 N 1.46498 * 109.46306 * 178.48363 * 5 4 2 8 8 C 1.36927 * 120.00469 * 205.07090 * 7 5 4 9 9 H 1.08003 * 120.00151 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00262 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99774 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00183 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47342 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47450 * 120.00056 * 12 10 8 15 15 H 1.48502 * 109.47427 * 239.99871 * 12 10 8 16 16 C 1.53042 * 109.53795 * 298.50664 * 5 4 2 17 17 C 1.53193 * 109.31296 * 61.36632 * 16 5 4 18 18 N 1.46924 * 108.77240 * 305.36545 * 17 16 5 19 19 C 1.34776 * 120.63055 * 233.58438 * 18 17 16 20 20 O 1.21629 * 120.00333 * 185.27437 * 19 18 17 21 21 C 1.47264 * 119.99970 * 4.99952 * 19 18 17 22 22 C 1.46687 * 126.94244 * 315.54753 * 21 19 18 23 23 C 1.34486 * 106.33579 * 179.97438 * 22 21 19 24 24 N 1.36449 * 108.85216 * 0.02562 * 23 22 21 25 25 H 0.97005 * 124.84630 * 180.02562 * 24 23 22 26 26 C 1.34661 * 110.29889 * 359.72586 * 24 23 22 27 27 C 1.50706 * 125.79978 * 180.28242 * 26 24 23 28 28 C 1.53001 * 117.49827 * 8.93589 * 27 26 24 29 29 C 1.53001 * 117.49894 * 300.27606 * 27 26 24 30 30 H 1.08998 * 109.47525 * 173.40108 * 1 2 3 31 31 H 1.09010 * 109.47003 * 293.39533 * 1 2 3 32 32 H 1.09001 * 109.47540 * 53.39410 * 1 2 3 33 33 H 1.08990 * 109.63731 * 54.55004 * 4 2 1 34 34 H 1.09009 * 109.42453 * 294.41269 * 4 2 1 35 35 H 0.97008 * 119.99416 * 25.06777 * 7 5 4 36 36 H 0.96998 * 119.99852 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.49262 * 301.41232 * 16 5 4 38 38 H 1.09001 * 109.51949 * 181.33311 * 16 5 4 39 39 H 1.08997 * 109.58821 * 185.57753 * 17 16 5 40 40 H 1.09004 * 109.58844 * 65.15209 * 17 16 5 41 41 H 1.08000 * 126.83195 * 0.02562 * 22 21 19 42 42 H 1.07990 * 125.57572 * 179.97438 * 23 22 21 43 43 H 1.08999 * 115.54526 * 154.60479 * 27 26 24 44 44 H 1.08999 * 117.50249 * 359.97438 * 28 27 26 45 45 H 1.09003 * 117.49771 * 145.02033 * 28 27 26 46 46 H 1.09001 * 117.49249 * 214.98094 * 29 27 26 47 47 H 1.08994 * 117.49908 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7364 1.2452 5 6 3.5712 -0.8500 1.1674 6 1 4.0064 0.1471 1.0988 7 7 4.0728 -1.5196 2.3700 8 6 5.3566 -1.2986 2.7917 9 1 5.9997 -0.6310 2.2375 10 6 5.8320 -1.9335 3.9309 11 7 5.0485 -2.7476 4.6060 12 14 7.5837 -1.6327 4.5057 13 1 8.2525 -0.6838 3.5797 14 1 7.5636 -1.0578 5.8748 15 1 8.3279 -2.9177 4.5193 16 6 3.9614 -1.6629 -0.0691 17 6 3.4655 -0.9420 -1.3266 18 7 2.0225 -0.6996 -1.1946 19 6 1.1673 -1.1061 -2.1536 20 8 -0.0116 -0.8160 -2.0801 21 6 1.6612 -1.8964 -3.2939 22 6 2.8729 -1.6452 -4.0817 23 6 2.9256 -2.6135 -5.0135 24 7 1.8460 -3.4335 -4.8589 25 1 1.6558 -4.2091 -5.4096 26 6 1.0860 -3.0160 -3.8287 27 6 -0.1843 -3.6695 -3.3487 28 6 -0.5500 -5.0285 -3.9490 29 6 -1.3418 -3.7792 -4.3433 30 1 -0.3634 -1.0208 -0.1181 31 1 -0.3633 0.4081 0.9433 32 1 -0.3634 0.6128 -0.8249 33 1 1.6096 -1.7338 1.2888 34 1 1.7689 -0.1772 2.1386 35 1 3.4953 -2.1195 2.8676 36 1 5.3806 -3.1910 5.4022 37 1 3.5060 -2.6516 -0.0130 38 1 5.0459 -1.7637 -0.1114 39 1 3.6530 -1.5637 -2.2021 40 1 3.9877 0.0089 -1.4326 41 1 3.5819 -0.8429 -3.9408 42 1 3.6960 -2.7235 -5.7622 43 1 -0.4348 -3.4978 -2.3019 44 1 0.1279 -5.4498 -4.6913 45 1 -1.0415 -5.7508 -3.2971 46 1 -2.3538 -3.6800 -3.9507 47 1 -1.1846 -3.3783 -5.3446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044724321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:07 Heat of formation + Delta-G solvation = 63.528334 kcal Electronic energy + Delta-G solvation = -27282.358396 eV Core-core repulsion = 23660.486223 eV Total energy + Delta-G solvation = -3621.872174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54375 -39.76693 -37.16499 -37.00898 -34.36776 -32.89435 -31.82778 -30.65034 -29.40429 -29.02523 -26.89010 -24.39525 -23.61440 -22.89807 -22.69904 -22.30729 -21.03833 -20.41523 -19.75425 -18.26956 -17.79318 -17.03764 -15.95204 -15.86668 -15.54634 -14.95732 -14.76564 -14.48300 -14.16965 -13.87478 -13.77593 -13.56379 -13.23491 -13.09233 -12.95833 -12.56136 -12.43269 -12.05351 -11.90410 -11.85584 -11.73890 -11.47253 -11.19669 -10.99023 -10.89088 -10.76665 -10.70049 -10.61076 -10.33266 -10.16880 -9.76764 -9.66562 -9.00712 -8.87471 -8.66892 -8.27916 -8.10384 -6.92980 -5.74543 -3.03061 1.80360 2.36656 2.92709 3.22566 3.43919 3.49254 3.50567 3.51833 3.70386 4.26484 4.53223 4.60085 4.70468 4.80636 4.94557 5.03675 5.27633 5.28094 5.29901 5.37283 5.49303 5.52270 5.54549 5.61765 5.66088 5.69318 5.74623 5.79515 5.88997 5.95178 5.99585 6.07533 6.13049 6.26422 6.37654 6.52221 6.56676 6.60702 6.64221 6.66165 6.83295 6.88640 7.04996 7.16339 7.28744 7.71983 7.80630 8.43964 8.56871 9.55070 10.13771 10.48594 11.48259 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.003257 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.786096 B = 8593.580206 C = 9010.561106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.147 3.853 3 H 0.069 0.931 4 C -0.133 4.133 5 C 0.178 3.822 6 H 0.046 0.954 7 N -0.725 5.725 8 C -0.236 4.236 9 H 0.071 0.929 10 C -0.015 4.015 11 N -0.933 5.933 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.148 4.148 17 C 0.098 3.902 18 N -0.596 5.596 19 C 0.590 3.410 20 O -0.544 6.544 21 C -0.211 4.211 22 C -0.169 4.169 23 C -0.014 4.014 24 N -0.554 5.554 25 H 0.412 0.588 26 C 0.118 3.882 27 C -0.084 4.084 28 C -0.183 4.183 29 C -0.162 4.162 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.148 0.852 42 H 0.169 0.831 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 -1.198 -21.645 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.044 3.956 3 H 0.087 0.913 4 C -0.172 4.172 5 C 0.068 3.932 6 H 0.064 0.936 7 N -0.365 5.365 8 C -0.367 4.367 9 H 0.089 0.911 10 C -0.211 4.211 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.220 1.220 16 C -0.190 4.190 17 C -0.025 4.025 18 N -0.328 5.328 19 C 0.379 3.621 20 O -0.424 6.424 21 C -0.221 4.221 22 C -0.193 4.193 23 C -0.142 4.142 24 N -0.149 5.149 25 H 0.248 0.752 26 C 0.002 3.998 27 C -0.102 4.102 28 C -0.220 4.220 29 C -0.199 4.199 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.166 0.834 42 H 0.186 0.814 43 H 0.147 0.853 44 H 0.107 0.893 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.526 -1.062 -21.625 23.653 hybrid contribution 1.104 -0.534 0.316 1.266 sum -8.422 -1.596 -21.309 22.968 Atomic orbital electron populations 1.22165 0.92995 1.03476 1.00392 1.21366 0.95309 0.95005 0.83898 0.91340 1.22356 0.97520 1.00799 0.96552 1.20184 0.90924 0.94935 0.87142 0.93560 1.42447 1.12984 1.53994 1.27059 1.19287 0.89190 1.21717 1.06524 0.91140 1.24740 0.98123 0.99921 0.98289 1.69676 1.35340 1.33453 1.19677 0.86144 0.84611 0.77245 0.78360 1.20560 1.21932 1.21961 1.22632 1.01402 0.99964 0.94953 1.22141 0.79428 1.00494 1.00448 1.48043 1.07676 1.57278 1.19833 1.17420 0.85126 0.78473 0.81050 1.90796 1.16900 1.57152 1.77523 1.20157 0.99430 1.00284 1.02206 1.22040 0.98025 1.01409 0.97860 1.21697 0.93494 0.94920 1.04060 1.41429 1.20726 1.25666 1.27107 0.75171 1.19104 0.93730 0.96101 0.90856 1.20564 0.91441 0.98399 0.99840 1.23041 1.03912 0.91205 1.03836 1.23011 0.96645 1.00615 0.99650 0.91792 0.94040 0.90875 0.91908 0.90820 0.78324 0.93620 0.92394 0.90960 0.88754 0.92020 0.83415 0.81350 0.85320 0.89348 0.87750 0.87828 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.61 37.16 0.28 -1.74 16 2 C 0.15 2.29 3.51 -67.37 -0.24 2.06 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -2.33 4.86 -26.39 -0.13 -2.46 16 5 C 0.18 3.54 2.73 -67.89 -0.19 3.35 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 N -0.72 -18.16 5.12 -53.39 -0.27 -18.44 16 8 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 9 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 10 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 11 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 12 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 C -0.15 -2.63 5.66 -26.61 -0.15 -2.78 16 17 C 0.10 1.41 5.85 -3.71 -0.02 1.39 16 18 N -0.60 -9.14 2.97 -166.28 -0.49 -9.63 16 19 C 0.59 9.33 7.20 -12.59 -0.09 9.24 16 20 O -0.54 -9.55 12.35 5.25 0.06 -9.48 16 21 C -0.21 -2.88 5.42 -103.35 -0.56 -3.44 16 22 C -0.17 -1.88 8.65 -37.50 -0.32 -2.20 16 23 C -0.01 -0.12 11.89 -16.82 -0.20 -0.32 16 24 N -0.55 -4.81 5.80 -9.11 -0.05 -4.87 16 25 H 0.41 2.35 7.84 -40.82 -0.32 2.03 16 26 C 0.12 1.39 6.69 -81.88 -0.55 0.84 16 27 C -0.08 -0.90 5.74 -91.77 -0.53 -1.43 16 28 C -0.18 -1.41 10.13 -26.69 -0.27 -1.68 16 29 C -0.16 -1.39 10.24 -26.69 -0.27 -1.66 16 30 H 0.06 1.05 6.85 -51.93 -0.36 0.70 16 31 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.07 1.16 6.64 -51.93 -0.34 0.82 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 35 H 0.38 10.32 7.80 -40.82 -0.32 10.01 16 36 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.24 4.13 -51.93 -0.21 1.02 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.15 1.45 7.32 -52.49 -0.38 1.07 16 42 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.13 1.62 8.12 -51.93 -0.42 1.19 16 44 H 0.09 0.54 7.09 -51.93 -0.37 0.17 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -32.79 371.27 -10.28 -43.07 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -7.34 Total: 11.99 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -3.48 Total: -8.01 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.09 Total: -60.47 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.06 Total: -9.48 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.79 -10.28 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044724321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.595 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds