Wall clock time and date at job start Tue Mar 31 2020 11:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58260 * 2 1 4 4 C 1.53191 * 109.58773 * 120.27721 * 2 1 3 5 5 C 1.53042 * 109.31437 * 174.56860 * 4 2 1 6 6 C 1.53047 * 109.53404 * 298.63683 * 5 4 2 7 7 H 1.09001 * 109.49718 * 301.41172 * 6 5 4 8 8 N 1.46501 * 109.49459 * 181.31340 * 6 5 4 9 9 C 1.34781 * 119.99754 * 154.99776 * 8 6 5 10 10 O 1.21694 * 119.99597 * 0.02562 * 9 8 6 11 11 C 1.46673 * 119.99709 * 180.02562 * 9 8 6 12 12 C 1.37760 * 126.22453 * 180.02562 * 11 9 8 13 13 C 1.40098 * 107.10718 * 179.97438 * 12 11 9 14 14 C 1.35319 * 107.93190 * 359.97438 * 13 12 11 15 15 N 1.36005 * 108.67814 * 359.73978 * 14 13 12 16 16 H 0.97001 * 125.63425 * 180.25438 * 15 14 13 17 17 C 1.51505 * 110.13045 * 180.02562 * 14 13 12 18 18 C 1.54411 * 105.02577 * 343.00031 * 17 14 13 19 19 C 1.51355 * 141.73738 * 179.97438 * 13 12 11 20 20 C 1.53189 * 109.31332 * 61.36475 * 6 5 4 21 21 N 1.46920 * 109.58934 * 239.71289 * 2 1 3 22 22 C 1.36940 * 120.63146 * 6.46825 * 21 2 1 23 23 H 1.08008 * 119.99359 * 331.06885 * 22 21 2 24 24 C 1.38810 * 120.00700 * 151.07078 * 22 21 2 25 25 N 1.31615 * 120.00193 * 160.80709 * 24 22 21 26 26 Si 1.86806 * 119.99569 * 340.80720 * 24 22 21 27 27 H 1.48500 * 109.47035 * 92.35132 * 26 24 22 28 28 H 1.48496 * 109.46873 * 212.35381 * 26 24 22 29 29 H 1.48507 * 109.47127 * 332.35620 * 26 24 22 30 30 H 1.09005 * 109.47731 * 299.99915 * 1 2 3 31 31 H 1.09003 * 109.47690 * 60.00161 * 1 2 3 32 32 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49827 * 294.52087 * 4 2 1 34 34 H 1.09002 * 109.49658 * 54.61666 * 4 2 1 35 35 H 1.08997 * 109.45974 * 58.65498 * 5 4 2 36 36 H 1.08998 * 109.46199 * 178.61865 * 5 4 2 37 37 H 0.96999 * 120.00178 * 335.00896 * 8 6 5 38 38 H 1.08004 * 126.44443 * 0.03385 * 12 11 9 39 39 H 1.08995 * 110.33172 * 224.11310 * 17 14 13 40 40 H 1.09003 * 110.41906 * 101.93147 * 17 14 13 41 41 H 1.08996 * 110.91822 * 267.65301 * 18 17 14 42 42 H 1.09002 * 110.95155 * 144.03756 * 18 17 14 43 43 H 1.09001 * 110.34204 * 315.84642 * 19 13 12 44 44 H 1.09001 * 110.34015 * 78.09601 * 19 13 12 45 45 H 1.09005 * 109.58795 * 65.15337 * 20 6 5 46 46 H 1.08994 * 109.58758 * 185.43527 * 20 6 5 47 47 H 0.97005 * 119.99195 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5037 -2.6487 -0.0016 8 7 5.4181 -1.7973 -0.1120 9 6 5.9744 -2.8393 -0.7610 10 8 5.2658 -3.6664 -1.3039 11 6 7.4338 -2.9764 -0.8128 12 6 8.1352 -3.9843 -1.4372 13 6 9.4971 -3.7229 -1.2386 14 6 9.6016 -2.5853 -0.5133 15 7 8.3510 -2.1182 -0.2533 16 1 8.1407 -1.3141 0.2469 17 6 11.0598 -2.2546 -0.2690 18 6 11.8224 -3.5639 -0.5665 19 6 10.8713 -4.2728 -1.5551 20 6 3.4685 -0.9436 -1.3209 21 7 2.0225 -0.6981 -1.1952 22 6 1.1534 -1.1130 -2.1688 23 1 0.1360 -1.3682 -1.9112 24 6 1.5799 -1.2055 -3.4865 25 7 0.9061 -1.9397 -4.3462 26 14 3.1101 -0.2878 -4.0395 27 1 4.2939 -1.1746 -3.9072 28 1 2.9553 0.1229 -5.4581 29 1 3.2976 0.9176 -3.1926 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7637 -0.1652 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1530 1.1022 36 1 3.9381 -1.3388 2.0704 37 1 5.9828 -1.1379 0.3206 38 1 7.7143 -4.8186 -1.9789 39 1 11.2117 -1.9551 0.7679 40 1 11.3884 -1.4635 -0.9431 41 1 11.9510 -4.1541 0.3408 42 1 12.7854 -3.3566 -1.0333 43 1 10.8939 -5.3508 -1.3959 44 1 11.1472 -4.0348 -2.5824 45 1 3.9920 0.0065 -1.4288 46 1 3.6599 -1.5673 -2.1941 47 1 1.2040 -2.0040 -5.2672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071982931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:25 Heat of formation + Delta-G solvation = 35.353205 kcal Electronic energy + Delta-G solvation = -27057.824203 eV Core-core repulsion = 23434.730264 eV Total energy + Delta-G solvation = -3623.093939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72575 -39.45635 -37.81224 -36.14015 -34.64092 -32.81886 -31.20131 -30.92858 -30.66938 -28.17003 -27.42609 -26.14535 -24.90952 -23.15474 -22.50369 -21.22390 -20.73874 -20.04237 -19.38321 -19.08373 -18.11198 -16.55710 -16.06116 -15.97525 -15.65238 -15.07520 -14.74480 -14.55195 -13.89039 -13.79082 -13.56933 -13.52797 -13.47086 -13.18022 -13.03942 -12.93679 -12.41222 -12.18513 -11.96783 -11.71410 -11.56162 -11.47491 -11.43364 -11.28014 -11.22792 -10.81080 -10.72579 -10.37684 -10.27255 -10.06146 -9.79845 -9.67580 -9.37804 -8.92649 -8.85721 -8.49788 -8.03305 -6.90381 -5.88191 -3.26271 1.47034 2.57809 2.70818 3.24815 3.42419 3.51158 3.53734 3.55672 4.26607 4.41065 4.60223 4.70011 4.81486 4.97524 4.99094 5.12919 5.18636 5.20975 5.34632 5.43046 5.44456 5.45657 5.50389 5.61240 5.72749 5.77265 5.88370 5.89183 5.95859 6.01122 6.09341 6.14142 6.21215 6.25407 6.33385 6.45590 6.52057 6.56149 6.61623 6.70007 6.82149 6.90947 6.99723 7.09157 7.26736 7.67670 8.01973 8.39697 8.41661 8.98511 9.78809 10.14626 11.27404 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.003567 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.144468 B = 7848.848239 C = 8769.620695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.029 0.971 4 C -0.127 4.127 5 C -0.116 4.116 6 C 0.127 3.873 7 H 0.095 0.905 8 N -0.726 5.726 9 C 0.583 3.417 10 O -0.513 6.513 11 C -0.038 4.038 12 C -0.088 4.088 13 C -0.195 4.195 14 C 0.009 3.991 15 N -0.523 5.523 16 H 0.411 0.589 17 C -0.040 4.040 18 C -0.115 4.115 19 C -0.050 4.050 20 C 0.120 3.880 21 N -0.597 5.597 22 C -0.262 4.262 23 H 0.093 0.907 24 C 0.030 3.970 25 N -0.905 5.905 26 Si 0.878 3.122 27 H -0.287 1.287 28 H -0.303 1.303 29 H -0.273 1.273 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.387 0.613 38 H 0.147 0.853 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.022 0.978 46 H 0.080 0.920 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.020 1.733 13.035 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.155 4.155 6 C 0.022 3.978 7 H 0.113 0.887 8 N -0.377 5.377 9 C 0.369 3.631 10 O -0.387 6.387 11 C -0.150 4.150 12 C -0.114 4.114 13 C -0.201 4.201 14 C -0.108 4.108 15 N -0.119 5.119 16 H 0.248 0.752 17 C -0.078 4.078 18 C -0.153 4.153 19 C -0.087 4.087 20 C -0.006 4.006 21 N -0.321 5.321 22 C -0.390 4.390 23 H 0.111 0.889 24 C -0.169 4.169 25 N -0.548 5.548 26 Si 0.708 3.292 27 H -0.214 1.214 28 H -0.232 1.232 29 H -0.198 1.198 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.219 0.781 38 H 0.165 0.835 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.040 0.960 46 H 0.098 0.902 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.308 1.196 12.519 23.043 hybrid contribution 1.037 1.303 -0.019 1.665 sum 20.345 2.499 12.500 24.009 Atomic orbital electron populations 1.21813 0.95160 1.02040 1.00436 1.20504 0.93786 0.93309 0.86151 0.95332 1.22053 0.93905 1.01852 0.98906 1.21691 0.97772 0.99448 0.96544 1.21808 0.77422 1.01489 0.97112 0.88740 1.46035 1.08691 1.26691 1.56305 1.17027 0.85067 0.81909 0.79088 1.90922 1.61323 1.41840 1.44629 1.20424 0.89056 0.96285 1.09245 1.20716 0.90781 0.98830 1.01108 1.20281 0.94330 0.99307 1.06216 1.21218 0.87534 0.97891 1.04164 1.41309 1.04362 1.22227 1.43974 0.75245 1.20683 0.86101 0.98990 1.02023 1.22325 0.97974 0.95127 0.99839 1.20471 0.89295 0.99885 0.99093 1.21737 0.85565 0.96837 0.96494 1.44423 1.01493 1.65439 1.20784 1.18895 0.95579 1.38916 0.85595 0.88947 1.25279 0.97271 0.98506 0.95890 1.69810 1.41164 1.39133 1.04683 0.87002 0.84079 0.81165 0.76910 1.21446 1.23167 1.19823 0.94117 0.91685 0.92302 0.92150 0.91489 0.92244 0.92446 0.78082 0.83506 0.90974 0.90022 0.90720 0.90166 0.91116 0.90855 0.95975 0.90233 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.94 37.16 0.30 -2.21 16 2 C 0.17 3.26 3.49 -67.61 -0.24 3.02 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.02 5.37 -26.61 -0.14 -2.16 16 5 C -0.12 -1.71 5.35 -26.68 -0.14 -1.85 16 6 C 0.13 2.34 2.61 -67.81 -0.18 2.17 16 7 H 0.09 2.02 7.58 -51.93 -0.39 1.62 16 8 N -0.73 -11.38 5.08 -54.99 -0.28 -11.66 16 9 C 0.58 10.57 7.75 -12.85 -0.10 10.47 16 10 O -0.51 -11.78 16.54 5.19 0.09 -11.69 16 11 C -0.04 -0.57 7.05 -82.09 -0.58 -1.15 16 12 C -0.09 -1.32 10.66 -39.06 -0.42 -1.74 16 13 C -0.20 -2.39 6.89 -104.64 -0.72 -3.11 16 14 C 0.01 0.10 8.01 -81.39 -0.65 -0.55 16 15 N -0.52 -5.87 6.00 -5.44 -0.03 -5.91 16 16 H 0.41 3.30 8.18 -40.82 -0.33 2.97 16 17 C -0.04 -0.28 6.79 -26.75 -0.18 -0.46 16 18 C -0.11 -0.72 7.12 -25.25 -0.18 -0.90 16 19 C -0.05 -0.44 6.79 -26.82 -0.18 -0.62 16 20 C 0.12 2.75 3.78 -3.56 -0.01 2.74 16 21 N -0.60 -14.32 2.76 -164.56 -0.45 -14.78 16 22 C -0.26 -7.39 9.05 -15.06 -0.14 -7.53 16 23 H 0.09 2.72 6.39 -52.48 -0.34 2.39 16 24 C 0.03 0.90 5.25 -17.43 -0.09 0.81 16 25 N -0.91 -28.76 13.97 55.49 0.78 -27.98 16 26 Si 0.88 23.66 24.35 -169.99 -4.14 19.53 16 27 H -0.29 -7.87 6.62 56.52 0.37 -7.49 16 28 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 29 H -0.27 -7.10 6.62 56.52 0.37 -6.73 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.30 7.64 -51.93 -0.40 0.90 16 32 H 0.06 1.14 7.42 -51.93 -0.39 0.75 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.39 4.46 7.73 -40.82 -0.32 4.15 16 38 H 0.15 2.22 8.06 -52.48 -0.42 1.80 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.02 0.50 7.04 -51.93 -0.37 0.13 16 46 H 0.08 2.13 4.62 -51.93 -0.24 1.89 16 47 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -35.86 363.63 -9.67 -45.53 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.45 Total: 4.57 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.65 Total: -3.09 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.01 Total: -60.33 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.14 Total: 19.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.86 -9.67 -45.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071982931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.885 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds