Wall clock time and date at job start Tue Mar 31 2020 11:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58799 * 2 1 4 4 C 1.53164 * 109.58710 * 239.56747 * 2 1 3 5 5 C 1.53049 * 109.32687 * 185.56974 * 4 2 1 6 6 C 1.53041 * 109.52250 * 61.37079 * 5 4 2 7 7 H 1.09002 * 109.49729 * 58.59644 * 6 5 4 8 8 N 1.46505 * 109.49404 * 178.69146 * 6 5 4 9 9 C 1.34771 * 119.99969 * 205.00378 * 8 6 5 10 10 O 1.21701 * 120.00107 * 359.97438 * 9 8 6 11 11 C 1.46680 * 120.00197 * 179.97438 * 9 8 6 12 12 C 1.37760 * 126.22564 * 179.68197 * 11 9 8 13 13 C 1.40102 * 107.10220 * 179.90715 * 12 11 9 14 14 C 1.35326 * 107.93458 * 0.36021 * 13 12 11 15 15 N 1.36003 * 108.67410 * 359.78417 * 14 13 12 16 16 H 0.97003 * 125.62976 * 180.02562 * 15 14 13 17 17 C 1.51501 * 110.12557 * 179.80133 * 14 13 12 18 18 C 1.54421 * 105.02257 * 342.95587 * 17 14 13 19 19 C 1.51360 * 141.73790 * 179.97438 * 13 12 11 20 20 C 1.53191 * 109.31761 * 298.64048 * 6 5 4 21 21 N 1.46924 * 109.58887 * 120.28490 * 2 1 3 22 22 C 1.36943 * 120.63047 * 353.37615 * 21 2 1 23 23 H 1.07994 * 119.99694 * 29.03344 * 22 21 2 24 24 C 1.38804 * 119.99860 * 209.04061 * 22 21 2 25 25 N 1.31617 * 120.00554 * 15.00542 * 24 22 21 26 26 Si 1.86804 * 119.99695 * 195.01258 * 24 22 21 27 27 H 1.48496 * 109.47404 * 89.99845 * 26 24 22 28 28 H 1.48509 * 109.46800 * 209.99626 * 26 24 22 29 29 H 1.48502 * 109.47190 * 329.99526 * 26 24 22 30 30 H 1.09004 * 109.47092 * 299.71657 * 1 2 3 31 31 H 1.09000 * 109.47570 * 59.71333 * 1 2 3 32 32 H 1.09001 * 109.47141 * 179.71731 * 1 2 3 33 33 H 1.08996 * 109.48091 * 65.62734 * 4 2 1 34 34 H 1.08996 * 109.50689 * 305.53268 * 4 2 1 35 35 H 1.09006 * 109.46012 * 301.36224 * 5 4 2 36 36 H 1.08993 * 109.46166 * 181.38763 * 5 4 2 37 37 H 0.96996 * 120.00287 * 25.00007 * 8 6 5 38 38 H 1.07998 * 126.44896 * 0.04518 * 12 11 9 39 39 H 1.09001 * 110.33239 * 101.88624 * 17 14 13 40 40 H 1.09007 * 110.33092 * 224.10459 * 17 14 13 41 41 H 1.09000 * 110.94724 * 267.69083 * 18 17 14 42 42 H 1.09006 * 110.93665 * 144.06234 * 18 17 14 43 43 H 1.08996 * 110.33467 * 316.22131 * 19 13 12 44 44 H 1.08997 * 110.33521 * 78.46565 * 19 13 12 45 45 H 1.08993 * 109.58865 * 174.42189 * 20 6 5 46 46 H 1.08998 * 109.58512 * 294.85100 * 20 6 5 47 47 H 0.96998 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 -1.2442 5 6 3.5675 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0655 7 1 3.4982 -2.6528 0.0084 8 7 5.4142 -1.8052 0.1197 9 6 5.9676 -2.8472 0.7710 10 8 5.2568 -3.6720 1.3146 11 6 7.4267 -2.9873 0.8248 12 6 8.1254 -3.9926 1.4565 13 6 9.4880 -3.7371 1.2547 14 6 9.5957 -2.6014 0.5267 15 7 8.3462 -2.1356 0.2591 16 1 8.1381 -1.3351 -0.2477 17 6 11.0548 -2.2750 0.2826 18 6 11.8318 -3.1153 1.3193 19 6 10.8608 -4.2883 1.5750 20 6 3.4651 -0.9454 1.3249 21 7 2.0226 -0.6981 1.1953 22 6 1.1537 -1.1101 2.1703 23 1 0.1360 -1.3649 1.9142 24 6 1.5812 -1.2000 3.4879 25 7 2.7045 -0.6215 3.8564 26 14 0.5621 -2.1425 4.7380 27 1 0.9960 -3.5624 4.7610 28 1 0.7531 -1.5446 6.0840 29 1 -0.8729 -2.0694 4.3631 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.7658 -0.1694 -2.1361 34 1 1.6029 -1.7269 -1.2890 35 1 4.0061 0.1460 -1.0995 36 1 3.9376 -1.3474 -2.0653 37 1 5.9808 -1.1477 -0.3133 38 1 7.7022 -4.8228 2.0025 39 1 11.3426 -2.5601 -0.7293 40 1 11.2373 -1.2124 0.4438 41 1 12.0031 -2.5460 2.2329 42 1 12.7737 -3.4732 0.9035 43 1 10.9097 -4.6001 2.6183 44 1 11.0959 -5.1250 0.9173 45 1 3.6518 -1.5691 2.1990 46 1 3.9903 0.0037 1.4316 47 1 3.0033 -0.6847 4.7770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071982932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:28 Heat of formation + Delta-G solvation = 29.760433 kcal Electronic energy + Delta-G solvation = -26929.499316 eV Core-core repulsion = 23306.162856 eV Total energy + Delta-G solvation = -3623.336460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.60928 -39.21426 -37.54765 -36.03799 -34.43812 -32.81090 -31.08071 -30.77452 -29.84556 -28.03444 -27.33250 -25.93636 -24.96313 -22.87622 -22.18931 -21.12567 -20.52308 -19.86299 -19.27256 -18.99145 -17.93688 -16.42572 -15.91080 -15.70412 -15.47101 -15.03719 -14.49991 -13.94363 -13.80654 -13.69271 -13.47228 -13.39578 -13.28989 -13.07630 -12.89609 -12.71470 -12.38107 -11.99590 -11.78147 -11.47688 -11.43996 -11.35438 -11.15754 -11.11750 -10.86215 -10.69397 -10.53892 -10.39362 -10.25240 -9.94979 -9.82952 -9.46731 -9.45865 -8.77544 -8.59316 -8.39177 -7.91717 -6.59965 -5.71028 -3.16140 1.60548 2.68109 2.82909 3.43007 3.47976 3.52190 3.53572 3.72770 4.36203 4.49567 4.56638 4.77897 4.99483 5.08391 5.25771 5.32596 5.36832 5.41859 5.48762 5.51833 5.55080 5.57779 5.65999 5.69330 5.85602 5.95877 5.96879 6.06957 6.08305 6.23556 6.26241 6.31605 6.38801 6.45227 6.48810 6.61793 6.73007 6.77039 6.89726 7.00612 7.05546 7.13050 7.32083 7.39841 7.76620 7.86501 7.91661 8.52034 8.59458 9.27087 9.91348 10.46089 11.36986 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.003402 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.308791 B = 8227.362450 C = 9442.183340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.084 0.916 8 N -0.721 5.721 9 C 0.585 3.415 10 O -0.518 6.518 11 C -0.033 4.033 12 C -0.091 4.091 13 C -0.196 4.196 14 C 0.007 3.993 15 N -0.522 5.522 16 H 0.411 0.589 17 C -0.039 4.039 18 C -0.115 4.115 19 C -0.049 4.049 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.254 4.254 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.385 0.615 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.015 0.985 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.228 -1.055 -11.050 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.102 0.898 8 N -0.371 5.371 9 C 0.371 3.629 10 O -0.393 6.393 11 C -0.145 4.145 12 C -0.118 4.118 13 C -0.202 4.202 14 C -0.111 4.111 15 N -0.118 5.118 16 H 0.248 0.752 17 C -0.077 4.077 18 C -0.153 4.153 19 C -0.087 4.087 20 C 0.041 3.959 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.089 0.911 24 C -0.192 4.192 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.217 0.783 38 H 0.164 0.836 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.033 0.967 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.619 -1.515 -10.545 18.906 hybrid contribution -0.297 0.381 0.214 0.528 sum 15.323 -1.134 -10.331 18.515 Atomic orbital electron populations 1.21803 0.95959 1.01416 1.00221 1.20483 0.93116 0.93517 0.87069 0.95808 1.22041 0.94174 1.01397 0.98943 1.21687 0.97562 0.99520 0.96672 1.22039 0.77243 1.01110 0.98359 0.89757 1.45979 1.08851 1.26426 1.55802 1.16959 0.84889 0.81960 0.79116 1.90893 1.61181 1.42280 1.44906 1.20492 0.89183 0.96316 1.08539 1.20682 0.90758 0.98985 1.01336 1.20268 0.94312 0.99117 1.06508 1.21189 0.87579 0.98280 1.04002 1.41320 1.04342 1.22569 1.43545 0.75236 1.20673 0.86138 1.00731 1.00206 1.22330 0.97729 0.96486 0.98776 1.20457 0.89316 0.97236 1.01672 1.21094 0.83547 0.96841 0.94425 1.44029 1.02620 1.64813 1.19199 1.19153 0.94721 1.38370 0.86101 0.91139 1.25076 0.97728 0.99390 0.97053 1.69988 1.23301 1.44272 1.16916 0.86316 0.79675 0.80115 0.80805 1.21245 1.21822 1.20454 0.91961 0.94359 0.92772 0.92673 0.91980 0.92397 0.93129 0.78325 0.83646 0.90144 0.90970 0.90686 0.90258 0.91164 0.90998 0.88528 0.96656 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.94 37.16 0.30 -2.28 16 2 C 0.16 3.39 3.50 -67.62 -0.24 3.15 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.14 5.37 -26.62 -0.14 -2.28 16 5 C -0.12 -1.88 5.36 -26.68 -0.14 -2.02 16 6 C 0.12 2.31 2.60 -67.81 -0.18 2.14 16 7 H 0.08 1.89 7.58 -51.93 -0.39 1.50 16 8 N -0.72 -12.08 5.08 -54.99 -0.28 -12.36 16 9 C 0.58 11.05 7.75 -12.85 -0.10 10.95 16 10 O -0.52 -12.19 16.54 5.19 0.09 -12.10 16 11 C -0.03 -0.52 7.05 -82.09 -0.58 -1.10 16 12 C -0.09 -1.42 10.66 -39.06 -0.42 -1.84 16 13 C -0.20 -2.51 6.89 -104.64 -0.72 -3.23 16 14 C 0.01 0.08 8.01 -81.39 -0.65 -0.57 16 15 N -0.52 -6.25 6.00 -5.43 -0.03 -6.29 16 16 H 0.41 3.68 8.18 -40.82 -0.33 3.34 16 17 C -0.04 -0.30 6.79 -26.74 -0.18 -0.48 16 18 C -0.12 -0.80 7.12 -25.25 -0.18 -0.98 16 19 C -0.05 -0.45 6.79 -26.82 -0.18 -0.64 16 20 C 0.17 4.12 4.86 -3.71 -0.02 4.10 16 21 N -0.58 -14.64 2.99 -164.80 -0.49 -15.14 16 22 C -0.25 -7.02 8.60 -15.06 -0.13 -7.15 16 23 H 0.07 1.90 6.21 -52.49 -0.33 1.57 16 24 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 25 N -0.90 -27.07 11.14 55.49 0.62 -26.45 16 26 Si 0.90 22.70 29.58 -169.99 -5.03 17.67 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.04 7.45 -51.93 -0.39 0.65 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.38 4.96 7.73 -40.82 -0.32 4.65 16 38 H 0.15 2.28 8.06 -52.49 -0.42 1.85 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.10 2.82 6.06 -51.93 -0.31 2.50 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 369.93 15.07 5.57 5.57 Total: -1.00 -34.17 369.93 -10.72 -44.89 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.52 Total: 6.33 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.65 Total: -2.13 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.19 Total: -60.23 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.17 -10.72 -44.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071982932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.655 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds