Wall clock time and date at job start Tue Mar 31 2020 11:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.58301 * 2 1 4 4 C 1.53193 * 109.58587 * 120.43023 * 2 1 3 5 5 C 1.53044 * 109.31142 * 174.42054 * 4 2 1 6 6 C 1.53043 * 109.53900 * 298.63512 * 5 4 2 7 7 H 1.09005 * 109.49309 * 181.34770 * 6 5 4 8 8 N 1.46492 * 109.49609 * 301.41149 * 6 5 4 9 9 C 1.34775 * 120.00118 * 204.99742 * 8 6 5 10 10 O 1.21703 * 119.99802 * 0.02562 * 9 8 6 11 11 C 1.46675 * 120.00411 * 179.97438 * 9 8 6 12 12 C 1.37763 * 126.22851 * 179.69039 * 11 9 8 13 13 C 1.40098 * 107.10546 * 179.85197 * 12 11 9 14 14 C 1.35322 * 107.93335 * 0.41423 * 13 12 11 15 15 N 1.36008 * 108.67745 * 359.75174 * 14 13 12 16 16 H 0.96998 * 125.63101 * 179.97438 * 15 14 13 17 17 C 1.51506 * 110.13053 * 179.76660 * 14 13 12 18 18 C 1.54419 * 105.01832 * 342.96028 * 17 14 13 19 19 C 1.51351 * 141.73628 * 179.97438 * 13 12 11 20 20 C 1.52762 * 109.38024 * 61.24120 * 6 5 4 21 21 N 1.46923 * 109.00850 * 305.58475 * 20 6 5 22 22 C 1.36936 * 120.63133 * 233.58986 * 21 20 6 23 23 H 1.08001 * 120.00267 * 151.01169 * 22 21 20 24 24 C 1.38820 * 120.00069 * 331.00554 * 22 21 20 25 25 N 1.31611 * 119.99635 * 343.80876 * 24 22 21 26 26 Si 1.86797 * 119.99931 * 163.80738 * 24 22 21 27 27 H 1.48493 * 109.47588 * 84.98283 * 26 24 22 28 28 H 1.48504 * 109.47311 * 324.97824 * 26 24 22 29 29 H 1.48499 * 109.46729 * 204.98168 * 26 24 22 30 30 H 1.09002 * 109.46963 * 180.28259 * 1 2 3 31 31 H 1.08998 * 109.47113 * 300.28088 * 1 2 3 32 32 H 1.09000 * 109.46839 * 60.28497 * 1 2 3 33 33 H 1.09000 * 109.49669 * 294.37320 * 4 2 1 34 34 H 1.08999 * 109.49890 * 54.43813 * 4 2 1 35 35 H 1.09003 * 109.45591 * 58.65791 * 5 4 2 36 36 H 1.08992 * 109.46157 * 178.61155 * 5 4 2 37 37 H 0.97006 * 120.00078 * 25.00529 * 8 6 5 38 38 H 1.07995 * 126.44272 * 0.02562 * 12 11 9 39 39 H 1.08998 * 110.33198 * 101.87175 * 17 14 13 40 40 H 1.09004 * 110.33276 * 224.10809 * 17 14 13 41 41 H 1.09001 * 110.94135 * 267.68926 * 18 17 14 42 42 H 1.08998 * 110.94349 * 144.05752 * 18 17 14 43 43 H 1.08997 * 110.34263 * 316.27074 * 19 13 12 44 44 H 1.08997 * 110.34143 * 78.51857 * 19 13 12 45 45 H 1.09006 * 109.50749 * 185.70770 * 20 6 5 46 46 H 1.08994 * 109.43486 * 65.42636 * 20 6 5 47 47 H 0.97000 * 119.99899 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0657 7 1 5.0413 -1.7700 -0.1057 8 7 3.3406 -2.9924 0.0109 9 6 3.8971 -4.0326 -0.6408 10 8 4.9119 -3.8698 -1.2926 11 6 3.2803 -5.3612 -0.5637 12 6 3.7343 -6.5066 -1.1800 13 6 2.8508 -7.5378 -0.8354 14 6 1.8891 -7.0142 -0.0404 15 7 2.1403 -5.6887 0.1320 16 1 1.6038 -5.0757 0.6585 17 6 0.8996 -8.0899 0.3586 18 6 1.1346 -9.2413 -0.6433 19 6 2.6062 -9.0155 -1.0531 20 6 3.4645 -0.9502 -1.3223 21 7 2.0226 -0.6980 -1.1954 22 6 1.1537 -1.1107 -2.1700 23 1 0.1347 -1.3611 -1.9142 24 6 1.5825 -1.2072 -3.4867 25 7 2.6963 -0.6143 -3.8611 26 14 0.5788 -2.1785 -4.7271 27 1 -0.4889 -1.3118 -5.2874 28 1 -0.0371 -3.3513 -4.0558 29 1 1.4645 -2.6448 -5.8240 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.7660 -0.1696 2.1366 34 1 1.6025 -1.7268 1.2894 35 1 4.0061 0.1459 1.0995 36 1 3.9379 -1.3475 2.0650 37 1 2.5319 -3.1223 0.5306 38 1 4.6085 -6.5938 -1.8081 39 1 1.0963 -8.4269 1.3763 40 1 -0.1209 -7.7164 0.2729 41 1 0.4726 -9.1497 -1.5044 42 1 1.0094 -10.2101 -0.1598 43 1 2.7510 -9.2730 -2.1023 44 1 3.2700 -9.6064 -0.4222 45 1 3.6504 -1.5769 -2.1946 46 1 3.9929 -0.0031 -1.4310 47 1 2.9957 -0.6814 -4.7813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071982933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:31 Heat of formation + Delta-G solvation = 31.474576 kcal Electronic energy + Delta-G solvation = -27851.288791 eV Core-core repulsion = 24228.026662 eV Total energy + Delta-G solvation = -3623.262129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46358 -39.26427 -37.49661 -35.91010 -34.15133 -32.75484 -30.99713 -30.72007 -29.91546 -27.86060 -27.20813 -26.16082 -24.98046 -22.93404 -22.19453 -21.02088 -20.54675 -19.83653 -19.07982 -18.63728 -17.98104 -16.31925 -15.79556 -15.70873 -15.25432 -14.97506 -14.38289 -14.01987 -13.95161 -13.53678 -13.42138 -13.33354 -13.12618 -13.05456 -12.79996 -12.66911 -12.49272 -11.97352 -11.74720 -11.33116 -11.26281 -11.24808 -11.19738 -11.04968 -10.97184 -10.91343 -10.68763 -10.41571 -10.36292 -9.97727 -9.63703 -9.49329 -9.42613 -8.63406 -8.44830 -8.42946 -7.76374 -6.60750 -5.74567 -3.18100 1.76562 2.81413 2.99446 3.38847 3.47053 3.48101 3.63944 3.92012 4.49138 4.51161 4.61597 4.88519 5.14911 5.21885 5.27640 5.32852 5.37092 5.43331 5.47467 5.54496 5.57347 5.62729 5.66657 5.80100 5.94969 5.97386 6.05829 6.07299 6.10931 6.20727 6.28182 6.30919 6.37632 6.40568 6.48834 6.56034 6.65973 6.84802 6.92558 7.01064 7.07578 7.15858 7.37664 7.53861 7.69679 7.83589 8.07199 8.49149 8.74472 9.23705 9.88592 10.44164 11.33621 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011636 B = 0.004894 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.732494 B = 5719.540415 C = 6526.029528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.129 4.129 5 C -0.119 4.119 6 C 0.120 3.880 7 H 0.078 0.922 8 N -0.700 5.700 9 C 0.588 3.412 10 O -0.534 6.534 11 C -0.027 4.027 12 C -0.095 4.095 13 C -0.197 4.197 14 C 0.006 3.994 15 N -0.519 5.519 16 H 0.411 0.589 17 C -0.039 4.039 18 C -0.115 4.115 19 C -0.048 4.048 20 C 0.161 3.839 21 N -0.582 5.582 22 C -0.254 4.254 23 H 0.066 0.934 24 C 0.009 3.991 25 N -0.896 5.896 26 Si 0.895 3.105 27 H -0.287 1.287 28 H -0.282 1.282 29 H -0.289 1.289 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.388 0.612 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.026 0.974 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -11.808 12.409 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.096 0.904 8 N -0.350 5.350 9 C 0.374 3.626 10 O -0.411 6.411 11 C -0.140 4.140 12 C -0.122 4.122 13 C -0.203 4.203 14 C -0.111 4.111 15 N -0.114 5.114 16 H 0.248 0.752 17 C -0.077 4.077 18 C -0.153 4.153 19 C -0.086 4.086 20 C 0.034 3.966 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.084 0.916 24 C -0.191 4.191 25 N -0.540 5.540 26 Si 0.725 3.275 27 H -0.214 1.214 28 H -0.208 1.208 29 H -0.215 1.215 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.222 0.778 38 H 0.162 0.838 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.044 0.956 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.044 -11.486 11.833 16.617 hybrid contribution -1.172 -0.037 -0.270 1.204 sum -3.217 -11.523 11.563 16.638 Atomic orbital electron populations 1.21796 0.96176 1.01065 1.00250 1.20457 0.92841 0.93710 0.87173 0.95687 1.22063 0.95209 1.00401 0.99223 1.21701 0.96938 1.00289 0.96788 1.21742 0.97100 0.81457 0.98281 0.90366 1.45741 1.29031 1.08917 1.51291 1.16893 0.83941 0.82120 0.79615 1.90821 1.24811 1.84041 1.41384 1.20476 0.92080 0.95766 1.05677 1.20626 1.00569 0.89400 1.01560 1.20235 0.98778 0.95942 1.05378 1.21156 1.01647 0.84285 1.04046 1.41324 1.21989 1.07778 1.40355 0.75205 1.20661 0.96339 0.91070 0.99669 1.22329 0.96877 0.97383 0.98734 1.20441 0.95624 0.90954 1.01541 1.21102 0.83772 0.97137 0.94549 1.44024 1.02749 1.64834 1.18948 1.19009 0.94473 1.38613 0.86243 0.91627 1.25027 0.97693 0.99425 0.96924 1.69979 1.23646 1.43501 1.16873 0.86443 0.79401 0.80154 0.81503 1.21439 1.20793 1.21503 0.93145 0.94434 0.91967 0.92808 0.93098 0.90926 0.93043 0.77818 0.83815 0.90224 0.90983 0.90727 0.90330 0.91274 0.91099 0.88490 0.95622 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.94 37.16 0.30 -2.11 16 2 C 0.16 3.20 3.50 -67.60 -0.24 2.96 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.01 5.20 -26.61 -0.14 -2.15 16 5 C -0.12 -1.86 5.59 -26.69 -0.15 -2.00 16 6 C 0.12 2.29 2.81 -68.03 -0.19 2.10 16 7 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 8 N -0.70 -12.72 4.90 -55.21 -0.27 -12.99 16 9 C 0.59 11.83 7.75 -12.86 -0.10 11.73 16 10 O -0.53 -12.62 16.54 5.19 0.09 -12.53 16 11 C -0.03 -0.48 7.05 -82.09 -0.58 -1.06 16 12 C -0.10 -1.63 10.66 -39.06 -0.42 -2.04 16 13 C -0.20 -2.84 6.89 -104.64 -0.72 -3.56 16 14 C 0.01 0.08 8.01 -81.38 -0.65 -0.57 16 15 N -0.52 -7.40 6.00 -5.43 -0.03 -7.44 16 16 H 0.41 4.85 8.18 -40.82 -0.33 4.51 16 17 C -0.04 -0.36 6.79 -26.74 -0.18 -0.55 16 18 C -0.12 -0.97 7.12 -25.24 -0.18 -1.15 16 19 C -0.05 -0.51 6.79 -26.82 -0.18 -0.69 16 20 C 0.16 3.85 4.85 -3.93 -0.02 3.83 16 21 N -0.58 -13.76 2.91 -165.03 -0.48 -14.24 16 22 C -0.25 -6.70 8.60 -15.06 -0.13 -6.83 16 23 H 0.07 1.69 6.20 -52.49 -0.33 1.37 16 24 C 0.01 0.24 4.93 -17.43 -0.09 0.16 16 25 N -0.90 -26.56 11.21 55.49 0.62 -25.94 16 26 Si 0.90 22.43 29.58 -169.99 -5.03 17.41 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 30 H 0.05 0.90 7.45 -51.93 -0.39 0.51 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.23 7.61 -51.93 -0.40 0.83 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.77 6.40 -51.93 -0.33 0.43 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.39 6.17 5.90 -40.82 -0.24 5.93 16 38 H 0.14 2.42 8.06 -52.49 -0.42 1.99 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 2.76 6.10 -51.93 -0.32 2.44 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -32.76 366.44 -10.60 -43.36 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.36 Total: 8.79 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.66 Total: -1.94 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.16 Total: -60.61 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.76 -10.60 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071982933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.835 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds