Wall clock time and date at job start Tue Mar 31 2020 11:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.69754 * 2 1 4 4 C 1.53197 * 109.58879 * 239.64193 * 2 1 3 5 5 C 1.53041 * 109.30857 * 185.57386 * 4 2 1 6 6 C 1.53044 * 109.53967 * 61.36985 * 5 4 2 7 7 H 1.08990 * 109.52819 * 178.66167 * 6 5 4 8 8 N 1.46504 * 109.49929 * 58.57648 * 6 5 4 9 9 C 1.34768 * 119.99889 * 154.88868 * 8 6 5 10 10 O 1.21701 * 120.00250 * 0.27690 * 9 8 6 11 11 C 1.46676 * 120.00046 * 180.27983 * 9 8 6 12 12 C 1.37760 * 126.22825 * 179.97438 * 11 9 8 13 13 C 1.40101 * 107.10776 * 179.97438 * 12 11 9 14 14 C 1.35322 * 107.92997 * 0.02562 * 13 12 11 15 15 N 1.35997 * 108.67645 * 359.75504 * 14 13 12 16 16 H 0.97003 * 125.63041 * 180.25847 * 15 14 13 17 17 C 1.51507 * 110.12328 * 179.97438 * 14 13 12 18 18 C 1.54406 * 105.02750 * 17.01358 * 17 14 13 19 19 C 1.51356 * 141.73579 * 180.02562 * 13 12 11 20 20 C 1.53191 * 109.30637 * 298.63179 * 6 5 4 21 21 N 1.46928 * 108.78162 * 54.63865 * 20 6 5 22 22 C 1.36930 * 120.63627 * 126.36943 * 21 20 6 23 23 H 1.08004 * 120.00210 * 209.03050 * 22 21 20 24 24 C 1.38820 * 120.00073 * 29.02370 * 22 21 20 25 25 N 1.31622 * 119.99758 * 15.02002 * 24 22 21 26 26 Si 1.86801 * 120.00006 * 195.02427 * 24 22 21 27 27 H 1.48497 * 109.47188 * 60.00089 * 26 24 22 28 28 H 1.48502 * 109.47024 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.46816 * 299.99979 * 26 24 22 30 30 H 1.08995 * 109.46924 * 299.64479 * 1 2 3 31 31 H 1.08997 * 109.47133 * 59.65211 * 1 2 3 32 32 H 1.08999 * 109.46703 * 179.64923 * 1 2 3 33 33 H 1.08992 * 109.49416 * 305.52620 * 4 2 1 34 34 H 1.08999 * 109.49303 * 65.59324 * 4 2 1 35 35 H 1.09000 * 109.46423 * 301.34492 * 5 4 2 36 36 H 1.09000 * 109.45787 * 181.38116 * 5 4 2 37 37 H 0.97001 * 119.99870 * 335.17176 * 8 6 5 38 38 H 1.08001 * 126.44271 * 359.96728 * 12 11 9 39 39 H 1.09001 * 110.32700 * 135.89619 * 17 14 13 40 40 H 1.08999 * 110.33170 * 258.12598 * 17 14 13 41 41 H 1.09001 * 110.92287 * 92.33447 * 18 17 14 42 42 H 1.09000 * 110.91747 * 215.93367 * 18 17 14 43 43 H 1.08997 * 110.33877 * 281.88464 * 19 13 12 44 44 H 1.08994 * 110.34216 * 44.13925 * 19 13 12 45 45 H 1.09005 * 109.58528 * 174.42464 * 20 6 5 46 46 H 1.09004 * 109.58689 * 294.69883 * 20 6 5 47 47 H 0.96996 * 119.99613 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0437 -0.7294 -1.2454 5 6 3.5676 -0.8479 -1.1700 6 6 3.9571 -1.6656 0.0636 7 1 5.0412 -1.7700 0.1042 8 7 3.3407 -2.9923 -0.0145 9 6 3.8985 -4.0337 0.6340 10 8 4.9114 -3.8710 1.2887 11 6 3.2848 -5.3634 0.5508 12 6 3.7440 -6.5115 1.1581 13 6 2.8596 -7.5419 0.8136 14 6 1.8977 -7.0173 0.0194 15 7 2.1436 -5.6897 -0.1435 16 1 1.6041 -5.0748 -0.6648 17 6 0.9108 -8.0935 -0.3846 18 6 1.1474 -9.2484 0.6127 19 6 2.6182 -9.0211 1.0250 20 6 3.4651 -0.9467 1.3238 21 7 2.0225 -0.6995 1.1946 22 6 1.1536 -1.1133 2.1686 23 1 0.1360 -1.3680 1.9118 24 6 1.5808 -1.2056 3.4862 25 7 2.7039 -0.6273 3.8560 26 14 0.5618 -2.1506 4.7344 27 1 0.4327 -3.5646 4.2993 28 1 1.2299 -2.0991 6.0597 29 1 -0.7875 -1.5390 4.8367 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5192 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.6031 -1.7253 -1.2912 34 1 1.7656 -0.1672 -2.1368 35 1 4.0062 0.1475 -1.0992 36 1 3.9380 -1.3448 -2.0667 37 1 2.5334 -3.1221 -0.5364 38 1 4.6209 -6.6004 1.7822 39 1 -0.1104 -7.7224 -0.2987 40 1 1.1094 -8.4264 -1.4033 41 1 0.4841 -9.1616 1.4733 42 1 1.0244 -10.2153 0.1248 43 1 3.2837 -9.6079 0.3919 44 1 2.7628 -9.2826 2.0731 45 1 3.6519 -1.5715 2.1973 46 1 3.9922 0.0011 1.4331 47 1 3.0021 -0.6915 4.7767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071982934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:34 Heat of formation + Delta-G solvation = 31.440287 kcal Electronic energy + Delta-G solvation = -27844.162660 eV Core-core repulsion = 24220.899045 eV Total energy + Delta-G solvation = -3623.263616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46141 -39.24777 -37.48883 -35.90857 -34.14505 -32.75330 -30.99108 -30.71424 -29.90142 -27.85771 -27.20627 -26.14735 -24.98209 -22.93035 -22.18221 -21.01893 -20.54567 -19.83312 -19.07831 -18.63609 -17.97794 -16.31618 -15.79298 -15.70577 -15.25293 -14.96877 -14.38167 -14.01616 -13.95225 -13.53010 -13.41617 -13.33077 -13.12377 -13.04752 -12.79954 -12.66135 -12.49049 -11.96622 -11.74443 -11.32828 -11.25580 -11.24728 -11.19601 -11.04862 -10.95583 -10.91391 -10.68985 -10.41443 -10.36570 -9.97503 -9.63459 -9.48966 -9.42769 -8.63096 -8.43890 -8.42885 -7.76066 -6.60457 -5.73922 -3.18535 1.76960 2.81583 2.99805 3.39314 3.46511 3.47588 3.64515 3.92425 4.49320 4.51165 4.61741 4.88587 5.15266 5.22135 5.28159 5.33188 5.37402 5.43775 5.47994 5.54687 5.57510 5.62757 5.66865 5.80222 5.95152 5.97401 6.06102 6.07554 6.11315 6.20971 6.28522 6.30949 6.37924 6.40825 6.49050 6.56243 6.65991 6.85383 6.92869 7.01303 7.07714 7.16168 7.38211 7.54164 7.71454 7.83453 8.07829 8.49830 8.75049 9.24129 9.88609 10.44235 11.33920 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.004880 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.463618 B = 5736.171583 C = 6544.693408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.119 3.881 7 H 0.078 0.922 8 N -0.700 5.700 9 C 0.588 3.412 10 O -0.533 6.533 11 C -0.027 4.027 12 C -0.095 4.095 13 C -0.197 4.197 14 C 0.006 3.994 15 N -0.519 5.519 16 H 0.411 0.589 17 C -0.039 4.039 18 C -0.115 4.115 19 C -0.048 4.048 20 C 0.161 3.839 21 N -0.582 5.582 22 C -0.254 4.254 23 H 0.066 0.934 24 C 0.009 3.991 25 N -0.898 5.898 26 Si 0.896 3.104 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.388 0.612 38 H 0.144 0.856 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.026 0.974 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 -11.761 -12.413 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.096 0.904 8 N -0.349 5.349 9 C 0.374 3.626 10 O -0.410 6.410 11 C -0.140 4.140 12 C -0.122 4.122 13 C -0.203 4.203 14 C -0.112 4.112 15 N -0.114 5.114 16 H 0.248 0.752 17 C -0.077 4.077 18 C -0.153 4.153 19 C -0.086 4.086 20 C 0.034 3.966 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.084 0.916 24 C -0.191 4.191 25 N -0.541 5.541 26 Si 0.726 3.274 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.222 0.778 38 H 0.162 0.838 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.044 0.956 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.055 -11.432 -11.825 16.575 hybrid contribution -1.183 -0.028 0.266 1.213 sum -3.238 -11.460 -11.558 16.596 Atomic orbital electron populations 1.21790 0.96162 1.01058 1.00252 1.20462 0.92831 0.93696 0.87201 0.95701 1.22065 0.95215 1.00398 0.99230 1.21700 0.96933 1.00281 0.96791 1.21813 0.97057 0.81461 0.98313 0.90411 1.45723 1.29076 1.08839 1.51290 1.16890 0.83915 0.82121 0.79647 1.90820 1.24936 1.84091 1.41198 1.20477 0.91948 0.95719 1.05838 1.20626 1.00522 0.89391 1.01637 1.20237 0.98780 0.95941 1.05366 1.21150 1.01712 0.84219 1.04082 1.41319 1.21942 1.07595 1.40578 0.75210 1.20658 0.96366 0.91045 0.99663 1.22327 0.96884 0.97356 0.98760 1.20440 0.95639 0.90932 1.01544 1.21204 0.83687 0.97138 0.94541 1.44029 1.02710 1.64762 1.19051 1.18993 0.94580 1.38526 0.86216 0.91641 1.25043 0.97630 0.99444 0.96963 1.69960 1.23081 1.44092 1.17001 0.86477 0.79533 0.80284 0.81098 1.21133 1.21569 1.21055 0.91967 0.94439 0.93149 0.93112 0.92818 0.90938 0.93071 0.77832 0.83821 0.90990 0.90225 0.90730 0.90329 0.91103 0.91270 0.88347 0.95609 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.94 37.16 0.30 -2.11 16 2 C 0.16 3.20 3.50 -67.59 -0.24 2.96 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.02 5.21 -26.61 -0.14 -2.16 16 5 C -0.12 -1.86 5.58 -26.69 -0.15 -2.01 16 6 C 0.12 2.28 2.81 -67.81 -0.19 2.09 16 7 H 0.08 1.54 7.57 -51.93 -0.39 1.14 16 8 N -0.70 -12.74 4.91 -55.00 -0.27 -13.01 16 9 C 0.59 11.86 7.76 -12.86 -0.10 11.76 16 10 O -0.53 -12.64 16.54 5.19 0.09 -12.56 16 11 C -0.03 -0.48 7.05 -82.09 -0.58 -1.05 16 12 C -0.10 -1.63 10.66 -39.06 -0.42 -2.05 16 13 C -0.20 -2.84 6.89 -104.64 -0.72 -3.56 16 14 C 0.01 0.08 8.01 -81.39 -0.65 -0.57 16 15 N -0.52 -7.42 6.00 -5.44 -0.03 -7.45 16 16 H 0.41 4.86 8.18 -40.82 -0.33 4.52 16 17 C -0.04 -0.36 6.79 -26.75 -0.18 -0.55 16 18 C -0.12 -0.98 7.12 -25.25 -0.18 -1.16 16 19 C -0.05 -0.51 6.79 -26.82 -0.18 -0.69 16 20 C 0.16 3.85 4.89 -3.71 -0.02 3.83 16 21 N -0.58 -13.76 2.91 -164.76 -0.48 -14.24 16 22 C -0.25 -6.70 8.60 -15.06 -0.13 -6.83 16 23 H 0.07 1.69 6.21 -52.48 -0.33 1.36 16 24 C 0.01 0.24 4.96 -17.43 -0.09 0.15 16 25 N -0.90 -26.58 11.14 55.49 0.62 -25.96 16 26 Si 0.90 22.43 29.58 -169.99 -5.03 17.40 16 27 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.06 1.23 7.62 -51.93 -0.40 0.83 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.89 7.44 -51.93 -0.39 0.51 16 33 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.39 6.18 5.90 -40.82 -0.24 5.94 16 38 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 2.80 6.06 -51.93 -0.31 2.49 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -32.74 366.41 -10.60 -43.34 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.35 Total: 8.89 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.66 Total: -1.93 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.16 Total: -60.66 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.74 -10.60 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071982934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.779 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds