Wall clock time and date at job start Tue Mar 31 2020 12:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09008 * 110.91720 * 2 1 4 4 C 1.54905 * 111.00621 * 236.09822 * 2 1 3 5 5 N 1.47423 * 104.83372 * 204.91756 * 4 2 1 6 6 C 1.36939 * 125.65233 * 204.16112 * 5 4 2 7 7 H 1.07999 * 120.00038 * 179.97438 * 6 5 4 8 8 C 1.38814 * 119.99501 * 359.95922 * 6 5 4 9 9 N 1.31617 * 120.00100 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99871 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47108 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47050 * 119.99965 * 10 8 6 13 13 H 1.48501 * 109.47358 * 240.00012 * 10 8 6 14 14 C 1.47031 * 108.70321 * 24.12446 * 5 4 2 15 15 C 1.54322 * 107.27052 * 358.94531 * 14 5 4 16 16 H 1.08990 * 110.72255 * 96.34074 * 15 14 5 17 17 C 1.52996 * 110.71822 * 219.44594 * 15 14 5 18 18 N 1.46504 * 109.46681 * 293.54005 * 17 15 14 19 19 C 1.34777 * 119.99854 * 179.97438 * 18 17 15 20 20 O 1.21633 * 119.99979 * 0.02562 * 19 18 17 21 21 C 1.47264 * 119.99990 * 180.27781 * 19 18 17 22 22 C 1.36772 * 126.94128 * 359.75001 * 21 19 18 23 23 N 1.34662 * 108.39354 * 179.97438 * 22 21 19 24 24 H 0.96998 * 124.84802 * 179.97438 * 23 22 21 25 25 C 1.36446 * 110.29887 * 0.02562 * 23 22 21 26 26 C 1.34484 * 108.85893 * 359.70520 * 25 23 22 27 27 C 1.50699 * 126.83465 * 180.28556 * 26 25 23 28 28 C 1.52990 * 117.49907 * 8.92944 * 27 26 25 29 29 C 1.52997 * 117.49785 * 300.26748 * 27 26 25 30 30 H 1.09005 * 109.47573 * 296.09733 * 1 2 3 31 31 H 1.09002 * 109.47053 * 56.09422 * 1 2 3 32 32 H 1.08995 * 109.47382 * 176.10087 * 1 2 3 33 33 H 1.08997 * 110.37067 * 86.07762 * 4 2 1 34 34 H 1.09001 * 110.45638 * 323.80043 * 4 2 1 35 35 H 0.97003 * 119.99808 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.88241 * 239.52296 * 14 5 4 37 37 H 1.09001 * 109.87720 * 118.35855 * 14 5 4 38 38 H 1.08998 * 109.47328 * 173.54337 * 17 15 14 39 39 H 1.08997 * 109.47540 * 53.54084 * 17 15 14 40 40 H 0.97000 * 120.00410 * 0.02562 * 18 17 15 41 41 H 1.07997 * 125.80197 * 0.02730 * 22 21 19 42 42 H 1.07998 * 125.56609 * 179.97438 * 25 23 22 43 43 H 1.08998 * 115.54852 * 154.60395 * 27 26 25 44 44 H 1.09001 * 117.50282 * 359.97438 * 28 27 26 45 45 H 1.09004 * 117.50120 * 145.01702 * 28 27 26 46 46 H 1.09001 * 117.49864 * 214.97722 * 29 27 26 47 47 H 1.08997 * 117.50051 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4270 -1.2430 -0.7733 6 6 4.4644 -1.5654 -1.6070 7 1 5.4130 -1.8750 -1.1939 8 6 4.2965 -1.4946 -2.9832 9 7 3.1401 -1.1181 -3.4865 10 14 5.7117 -1.9336 -4.1206 11 1 6.8945 -2.3230 -3.3115 12 1 5.3131 -3.0684 -4.9915 13 1 6.0525 -0.7591 -4.9630 14 6 3.4673 -1.2741 0.6962 15 6 2.0860 -0.8079 1.2023 16 1 1.4478 -1.6631 1.4239 17 6 2.2348 0.0877 2.4338 18 7 2.7613 -0.7011 3.5505 19 6 2.9761 -0.1170 4.7459 20 8 2.7324 1.0649 4.8978 21 6 3.5111 -0.9085 5.8666 22 6 3.8334 -2.2376 5.8542 23 7 4.2884 -2.5760 7.0757 24 1 4.5836 -3.4640 7.3308 25 6 4.2738 -1.4913 7.9034 26 6 3.8118 -0.4292 7.2201 27 6 3.6349 0.9735 7.7418 28 6 4.2061 1.2898 9.1254 29 6 2.6925 1.1714 8.9307 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8529 32 1 -0.3634 -1.0252 -0.0699 33 1 2.1559 -0.1720 -2.0836 34 1 1.4524 -1.6704 -1.4042 35 1 3.0229 -1.0683 -4.4481 36 1 4.2425 -0.5997 1.0600 37 1 3.6649 -2.2893 1.0401 38 1 1.2618 0.4971 2.7051 39 1 2.9222 0.9032 2.2091 40 1 2.9560 -1.6436 3.4292 41 1 3.7397 -2.9026 5.0084 42 1 4.5868 -1.4857 8.9370 43 1 3.6698 1.7624 6.9905 44 1 4.7095 0.4832 9.6586 45 1 4.6166 2.2869 9.2846 46 1 2.1077 2.0907 8.9618 47 1 2.2000 0.2871 9.3352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093093607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:57 Heat of formation + Delta-G solvation = 51.301375 kcal Electronic energy + Delta-G solvation = -26192.109740 eV Core-core repulsion = 22569.707366 eV Total energy + Delta-G solvation = -3622.402374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41298 -39.11354 -37.78995 -37.11078 -34.47206 -32.91103 -31.15260 -30.72326 -29.70272 -28.56488 -25.98279 -25.10088 -23.43463 -23.25323 -22.48191 -22.16781 -20.03454 -19.79085 -19.30270 -18.85772 -18.53051 -16.82553 -16.19540 -15.65732 -15.44695 -15.06201 -14.85497 -14.47690 -14.36837 -14.09231 -13.93093 -13.69099 -13.16869 -13.04269 -12.64381 -12.59315 -12.40753 -11.85561 -11.74752 -11.66390 -11.52431 -11.35342 -11.09881 -10.91105 -10.84541 -10.80380 -10.44098 -10.17957 -9.99676 -9.88636 -9.81643 -9.63228 -9.32387 -8.90361 -8.64318 -8.59418 -8.39927 -6.81595 -5.64320 -3.05869 1.67760 2.14971 2.97535 3.39822 3.45166 3.46958 3.47836 3.62067 3.96705 4.48637 4.49818 4.76558 4.83338 4.91080 4.99272 5.05466 5.18553 5.32034 5.33795 5.45225 5.49150 5.51829 5.58659 5.63655 5.74390 5.82951 5.89226 5.94306 5.98762 6.12905 6.21101 6.24630 6.26708 6.32176 6.55247 6.56785 6.60738 6.64113 6.69168 6.71062 6.85815 6.99666 7.20234 7.55955 7.64851 7.79013 7.88480 8.38100 8.52761 9.23448 9.84377 10.49548 11.39452 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.002646 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.874929 B =10577.907939 C =11371.169417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.221 4.221 7 H 0.077 0.923 8 C -0.012 4.012 9 N -0.921 5.921 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.142 3.858 15 C -0.110 4.110 16 H 0.075 0.925 17 C 0.136 3.864 18 N -0.725 5.725 19 C 0.586 3.414 20 O -0.546 6.546 21 C -0.217 4.217 22 C 0.047 3.953 23 N -0.549 5.549 24 H 0.418 0.582 25 C -0.025 4.025 26 C -0.077 4.077 27 C -0.074 4.074 28 C -0.183 4.183 29 C -0.172 4.172 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.013 0.987 35 H 0.251 0.749 36 H 0.025 0.975 37 H 0.016 0.984 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.397 0.603 41 H 0.174 0.826 42 H 0.166 0.834 43 H 0.123 0.877 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -2.179 23.539 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.095 0.905 8 C -0.208 4.208 9 N -0.570 5.570 10 Si 0.744 3.256 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.015 3.985 15 C -0.129 4.129 16 H 0.094 0.906 17 C 0.012 3.988 18 N -0.376 5.376 19 C 0.374 3.626 20 O -0.425 6.425 21 C -0.227 4.227 22 C -0.089 4.089 23 N -0.143 5.143 24 H 0.254 0.746 25 C -0.153 4.153 26 C -0.083 4.083 27 C -0.093 4.093 28 C -0.220 4.220 29 C -0.209 4.209 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.230 0.770 41 H 0.191 0.809 42 H 0.183 0.817 43 H 0.141 0.859 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.388 -1.458 23.463 23.549 hybrid contribution 0.970 -1.320 -0.582 1.738 sum -0.417 -2.778 22.881 23.053 Atomic orbital electron populations 1.21648 0.95528 1.01349 1.00674 1.22595 0.94580 0.99540 0.96382 0.91014 1.21978 0.84025 0.95865 0.94717 1.44503 1.10539 1.78981 0.99063 1.19117 0.91034 1.37556 0.87220 0.90532 1.24787 0.97262 1.02078 0.96631 1.69811 1.22320 1.53970 1.10934 0.86011 0.81149 0.77599 0.80823 1.20576 1.21807 1.21729 1.21329 0.93614 0.96971 0.86546 1.22489 0.98481 0.98146 0.93771 0.90625 1.21395 0.98846 0.94061 0.84489 1.45910 1.67024 1.13711 1.10950 1.17377 0.77207 0.86544 0.81504 1.90732 1.52636 1.15739 1.83352 1.20374 1.13774 0.93313 0.95267 1.21984 1.01656 0.96207 0.89070 1.41439 1.51375 1.11558 1.09972 0.74592 1.21438 1.10471 0.86358 0.97009 1.19632 1.03411 0.93362 0.91905 1.20398 1.03693 0.94262 0.90945 1.23003 0.96418 1.02671 0.99886 1.22980 0.92534 1.03090 1.02342 0.93612 0.92708 0.93014 0.87666 0.96935 0.93800 0.95726 0.96566 0.91742 0.91399 0.76973 0.80912 0.81666 0.85859 0.89157 0.88688 0.88725 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.31 37.15 0.35 -1.75 16 2 C -0.11 -2.06 3.09 -88.48 -0.27 -2.34 16 3 H 0.07 1.37 8.05 -51.92 -0.42 0.95 16 4 C 0.16 3.81 5.36 -2.53 -0.01 3.80 16 5 N -0.61 -15.41 3.39 -170.07 -0.58 -15.99 16 6 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 9 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 10 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.14 2.87 6.52 -3.06 -0.02 2.85 16 15 C -0.11 -1.84 2.48 -88.78 -0.22 -2.06 16 16 H 0.08 1.19 8.04 -51.93 -0.42 0.78 16 17 C 0.14 2.09 4.99 -4.04 -0.02 2.07 16 18 N -0.73 -9.99 5.39 -61.43 -0.33 -10.32 16 19 C 0.59 8.96 7.81 -12.59 -0.10 8.86 16 20 O -0.55 -10.18 15.41 5.25 0.08 -10.10 16 21 C -0.22 -2.74 6.29 -103.35 -0.65 -3.39 16 22 C 0.05 0.42 11.40 -16.84 -0.19 0.23 16 23 N -0.55 -3.80 5.90 -12.85 -0.08 -3.87 16 24 H 0.42 1.39 8.96 -40.82 -0.37 1.03 16 25 C -0.03 -0.21 11.26 -16.83 -0.19 -0.40 16 26 C -0.08 -0.90 6.02 -102.54 -0.62 -1.52 16 27 C -0.07 -0.87 5.78 -91.78 -0.53 -1.40 16 28 C -0.18 -1.58 10.03 -26.70 -0.27 -1.85 16 29 C -0.17 -1.65 10.24 -26.70 -0.27 -1.92 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.11 2.87 5.87 -51.93 -0.31 2.57 16 34 H 0.01 0.32 7.99 -51.93 -0.41 -0.09 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.02 0.52 7.77 -51.93 -0.40 0.11 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 40 H 0.40 4.53 7.27 -40.82 -0.30 4.24 16 41 H 0.17 1.07 7.45 -52.49 -0.39 0.68 16 42 H 0.17 0.95 7.16 -52.49 -0.38 0.58 16 43 H 0.12 1.75 7.03 -51.93 -0.37 1.38 16 44 H 0.09 0.64 7.00 -51.93 -0.36 0.28 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -34.23 379.27 -10.38 -44.61 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.46 Total: 4.75 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.27 Total: -5.56 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.42 Total: -56.48 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.23 -10.38 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093093607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.912 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds