Wall clock time and date at job start Tue Mar 31 2020 12:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09008 * 110.91720 * 2 1 4 4 C 1.54905 * 111.00621 * 236.09822 * 2 1 3 5 5 N 1.47423 * 104.83372 * 204.91756 * 4 2 1 6 6 C 1.36939 * 125.65233 * 204.16112 * 5 4 2 7 7 H 1.07999 * 120.00038 * 179.97438 * 6 5 4 8 8 C 1.38814 * 119.99501 * 359.95922 * 6 5 4 9 9 N 1.31617 * 120.00100 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99871 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47108 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47050 * 119.99965 * 10 8 6 13 13 H 1.48501 * 109.47358 * 240.00012 * 10 8 6 14 14 C 1.47031 * 108.70321 * 24.12446 * 5 4 2 15 15 C 1.54322 * 107.27052 * 358.94531 * 14 5 4 16 16 H 1.08990 * 110.72255 * 96.34074 * 15 14 5 17 17 C 1.52996 * 110.71822 * 219.44594 * 15 14 5 18 18 N 1.46504 * 109.46681 * 293.54005 * 17 15 14 19 19 C 1.34777 * 119.99854 * 179.97438 * 18 17 15 20 20 O 1.21633 * 119.99979 * 0.02562 * 19 18 17 21 21 C 1.47264 * 119.99990 * 180.27781 * 19 18 17 22 22 C 1.36772 * 126.94128 * 359.75001 * 21 19 18 23 23 N 1.34662 * 108.39354 * 179.97438 * 22 21 19 24 24 H 0.96998 * 124.84802 * 179.97438 * 23 22 21 25 25 C 1.36446 * 110.29887 * 0.02562 * 23 22 21 26 26 C 1.34484 * 108.85893 * 359.70520 * 25 23 22 27 27 C 1.50699 * 126.83465 * 180.28556 * 26 25 23 28 28 C 1.52990 * 117.49907 * 8.92944 * 27 26 25 29 29 C 1.52997 * 117.49785 * 300.26748 * 27 26 25 30 30 H 1.09005 * 109.47573 * 296.09733 * 1 2 3 31 31 H 1.09002 * 109.47053 * 56.09422 * 1 2 3 32 32 H 1.08995 * 109.47382 * 176.10087 * 1 2 3 33 33 H 1.08997 * 110.37067 * 86.07762 * 4 2 1 34 34 H 1.09001 * 110.45638 * 323.80043 * 4 2 1 35 35 H 0.97003 * 119.99808 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.88241 * 239.52296 * 14 5 4 37 37 H 1.09001 * 109.87720 * 118.35855 * 14 5 4 38 38 H 1.08998 * 109.47328 * 173.54337 * 17 15 14 39 39 H 1.08997 * 109.47540 * 53.54084 * 17 15 14 40 40 H 0.97000 * 120.00410 * 0.02562 * 18 17 15 41 41 H 1.07997 * 125.80197 * 0.02730 * 22 21 19 42 42 H 1.07998 * 125.56609 * 179.97438 * 25 23 22 43 43 H 1.08998 * 115.54852 * 154.60395 * 27 26 25 44 44 H 1.09001 * 117.50282 * 359.97438 * 28 27 26 45 45 H 1.09004 * 117.50120 * 145.01702 * 28 27 26 46 46 H 1.09001 * 117.49864 * 214.97722 * 29 27 26 47 47 H 1.08997 * 117.50051 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4270 -1.2430 -0.7733 6 6 4.4644 -1.5654 -1.6070 7 1 5.4130 -1.8750 -1.1939 8 6 4.2965 -1.4946 -2.9832 9 7 3.1401 -1.1181 -3.4865 10 14 5.7117 -1.9336 -4.1206 11 1 6.8945 -2.3230 -3.3115 12 1 5.3131 -3.0684 -4.9915 13 1 6.0525 -0.7591 -4.9630 14 6 3.4673 -1.2741 0.6962 15 6 2.0860 -0.8079 1.2023 16 1 1.4478 -1.6631 1.4239 17 6 2.2348 0.0877 2.4338 18 7 2.7613 -0.7011 3.5505 19 6 2.9761 -0.1170 4.7459 20 8 2.7324 1.0649 4.8978 21 6 3.5111 -0.9085 5.8666 22 6 3.8334 -2.2376 5.8542 23 7 4.2884 -2.5760 7.0757 24 1 4.5836 -3.4640 7.3308 25 6 4.2738 -1.4913 7.9034 26 6 3.8118 -0.4292 7.2201 27 6 3.6349 0.9735 7.7418 28 6 4.2061 1.2898 9.1254 29 6 2.6925 1.1714 8.9307 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8529 32 1 -0.3634 -1.0252 -0.0699 33 1 2.1559 -0.1720 -2.0836 34 1 1.4524 -1.6704 -1.4042 35 1 3.0229 -1.0683 -4.4481 36 1 4.2425 -0.5997 1.0600 37 1 3.6649 -2.2893 1.0401 38 1 1.2618 0.4971 2.7051 39 1 2.9222 0.9032 2.2091 40 1 2.9560 -1.6436 3.4292 41 1 3.7397 -2.9026 5.0084 42 1 4.5868 -1.4857 8.9370 43 1 3.6698 1.7624 6.9905 44 1 4.7095 0.4832 9.6586 45 1 4.6166 2.2869 9.2846 46 1 2.1077 2.0907 8.9618 47 1 2.2000 0.2871 9.3352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093093607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:57 Heat of formation + Delta-G solvation = 29.404078 kcal Electronic energy + Delta-G solvation = -26193.059278 eV Core-core repulsion = 22569.707366 eV Total energy + Delta-G solvation = -3623.351912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13867 -40.38302 -39.31024 -37.85079 -35.95419 -34.62676 -32.54965 -32.03984 -30.78670 -29.64352 -27.81932 -26.62183 -24.79049 -24.06376 -23.49047 -23.14256 -21.55999 -21.20660 -20.36918 -19.82511 -19.29652 -18.80677 -17.35241 -17.04504 -16.52321 -16.36740 -16.05670 -15.76818 -15.55934 -15.16485 -14.98479 -14.84128 -14.62608 -14.22071 -14.13781 -13.94349 -13.49828 -13.39600 -13.15814 -12.97998 -12.76138 -12.65885 -12.54392 -12.43914 -12.32982 -11.93043 -11.82704 -11.65049 -11.58940 -11.39458 -11.28551 -11.15708 -10.76693 -10.70476 -10.06890 -9.44290 -9.08114 -8.86460 -7.76264 -5.20441 0.82286 1.44609 1.46367 1.47505 1.57583 2.27654 2.48666 2.50635 2.59791 3.19874 3.33063 3.64736 3.78555 3.81794 3.92286 4.00162 4.02547 4.18050 4.24698 4.28955 4.34855 4.41158 4.51672 4.63559 4.66207 4.76991 4.81019 4.83883 4.86127 4.89815 4.99635 5.04131 5.11459 5.18534 5.20250 5.30842 5.37747 5.41097 5.42596 5.50877 5.55867 5.73942 5.78478 5.86214 5.98394 6.33178 6.68376 6.76097 7.12448 7.42272 7.80282 8.44182 9.25559 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.002646 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.874929 B =10577.907939 C =11371.169417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.062 0.938 4 C 0.163 3.837 5 N -0.629 5.629 6 C -0.236 4.236 7 H 0.080 0.920 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.979 3.021 11 H -0.267 1.267 12 H -0.291 1.291 13 H -0.293 1.293 14 C 0.139 3.861 15 C -0.088 4.088 16 H 0.097 0.903 17 C 0.148 3.852 18 N -0.716 5.716 19 C 0.581 3.419 20 O -0.592 6.592 21 C -0.265 4.265 22 C 0.069 3.931 23 N -0.530 5.530 24 H 0.439 0.561 25 C -0.008 4.008 26 C -0.111 4.111 27 C -0.103 4.103 28 C -0.161 4.161 29 C -0.171 4.171 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.067 0.933 34 H -0.007 1.007 35 H 0.246 0.754 36 H 0.017 0.983 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.410 0.590 41 H 0.203 0.797 42 H 0.198 0.802 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 -4.341 26.144 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.081 0.919 4 C 0.038 3.962 5 N -0.355 5.355 6 C -0.365 4.365 7 H 0.098 0.902 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.807 3.193 11 H -0.191 1.191 12 H -0.218 1.218 13 H -0.220 1.220 14 C 0.014 3.986 15 C -0.107 4.107 16 H 0.115 0.885 17 C 0.024 3.976 18 N -0.367 5.367 19 C 0.372 3.628 20 O -0.474 6.474 21 C -0.275 4.275 22 C -0.069 4.069 23 N -0.126 5.126 24 H 0.279 0.721 25 C -0.137 4.137 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.198 4.198 29 C -0.208 4.208 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.011 0.989 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.246 0.754 41 H 0.219 0.781 42 H 0.215 0.785 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.117 0.883 46 H 0.109 0.891 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.751 -3.674 26.113 26.381 hybrid contribution 0.814 -0.659 -1.351 1.709 sum 0.063 -4.333 24.762 25.139 Atomic orbital electron populations 1.21596 0.92771 1.02006 1.02082 1.22440 0.96768 0.98289 0.94702 0.91903 1.21748 0.83769 0.94936 0.95768 1.44828 1.10482 1.79016 1.01163 1.19481 0.91915 1.37089 0.88026 0.90229 1.25630 0.99720 1.02635 0.98149 1.70072 1.24069 1.55033 1.10697 0.84997 0.78713 0.76884 0.78668 1.19104 1.21816 1.22031 1.21489 0.95504 0.97694 0.83937 1.22319 0.96531 0.98529 0.93294 0.88493 1.21111 0.98728 0.93302 0.84463 1.45748 1.66699 1.14158 1.10141 1.17870 0.76455 0.86264 0.82240 1.90702 1.54784 1.17820 1.84131 1.20337 1.17047 0.94999 0.95126 1.22307 0.99251 0.95040 0.90312 1.41482 1.49744 1.12324 1.09016 0.72057 1.21794 1.08327 0.85535 0.98015 1.19833 1.05383 0.94136 0.92331 1.20255 1.06667 0.93896 0.91348 1.23105 0.95727 1.03686 0.97236 1.23028 0.93303 1.03344 1.01127 0.90976 0.92747 0.92524 0.91478 0.98949 0.94396 0.96456 0.94951 0.91086 0.93611 0.75413 0.78059 0.78528 0.89827 0.86772 0.88294 0.89095 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.31 71.98 0.67 -3.12 16 2 C -0.10 -3.78 3.09 -9.40 -0.03 -3.81 16 3 H 0.06 2.44 8.05 -2.38 -0.02 2.42 16 4 C 0.16 8.03 5.36 86.85 0.47 8.49 16 5 N -0.63 -32.50 3.39 -691.98 -2.35 -34.85 16 6 C -0.24 -13.32 10.27 84.03 0.86 -12.46 16 7 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 8 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 9 N -0.95 -57.04 10.09 21.65 0.22 -56.82 16 10 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 14 C 0.14 5.56 6.52 86.73 0.57 6.12 16 15 C -0.09 -2.84 2.48 -9.60 -0.02 -2.86 16 16 H 0.10 2.80 8.04 -2.39 -0.02 2.78 16 17 C 0.15 4.49 4.99 86.38 0.43 4.92 16 18 N -0.72 -19.05 5.39 -466.52 -2.51 -21.57 16 19 C 0.58 17.93 7.81 86.62 0.68 18.61 16 20 O -0.59 -23.18 15.41 -4.14 -0.06 -23.25 16 21 C -0.26 -6.44 6.29 -19.04 -0.12 -6.56 16 22 C 0.07 1.03 11.40 83.92 0.96 1.99 16 23 N -0.53 -5.24 5.90 -194.56 -1.15 -6.39 16 24 H 0.44 0.83 8.96 -92.71 -0.83 0.00 16 25 C -0.01 -0.12 11.26 83.12 0.94 0.82 16 26 C -0.11 -2.49 6.02 -18.51 -0.11 -2.60 16 27 C -0.10 -2.45 5.78 -11.54 -0.07 -2.52 16 28 C -0.16 -2.55 10.03 30.62 0.31 -2.24 16 29 C -0.17 -3.17 10.24 30.62 0.31 -2.85 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.64 8.07 -2.39 -0.02 1.62 16 33 H 0.07 3.84 5.87 -2.39 -0.01 3.82 16 34 H -0.01 -0.39 7.99 -2.39 -0.02 -0.41 16 35 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.02 0.73 7.77 -2.39 -0.02 0.71 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 1.60 8.06 -2.39 -0.02 1.58 16 40 H 0.41 8.49 7.27 -92.71 -0.67 7.82 16 41 H 0.20 1.67 7.45 -2.91 -0.02 1.65 16 42 H 0.20 1.34 7.16 -2.91 -0.02 1.32 16 43 H 0.08 2.62 7.03 -2.39 -0.02 2.60 16 44 H 0.11 1.23 7.00 -2.39 -0.02 1.22 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -79.06 379.27 1.95 -77.11 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.52 Total: 19.30 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 6.30 Total: -1.55 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -5.79 Total: -119.63 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.06 1.95 -77.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093093607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.516 kcal (2) G-P(sol) polarization free energy of solvation -79.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds