Wall clock time and date at job start Tue Mar 31 2020 12:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.58365 * 2 1 4 4 C 1.53193 * 109.58678 * 239.57219 * 2 1 3 5 5 C 1.53038 * 109.31433 * 185.57777 * 4 2 1 6 6 H 1.09004 * 109.44463 * 301.35221 * 5 4 2 7 7 N 1.46500 * 109.46166 * 181.38696 * 5 4 2 8 8 C 1.34778 * 120.00204 * 154.92756 * 7 5 4 9 9 O 1.21281 * 119.99617 * 0.02562 * 8 7 5 10 10 C 1.50693 * 119.99951 * 180.02562 * 8 7 5 11 11 C 1.53007 * 109.46880 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46804 * 179.97438 * 11 10 8 13 13 C 1.38648 * 120.78785 * 269.71352 * 12 11 10 14 14 C 1.38210 * 119.15900 * 179.80245 * 13 12 11 15 15 N 1.31862 * 120.76658 * 0.48739 * 14 13 12 16 16 C 1.31875 * 121.72262 * 359.74503 * 15 14 13 17 17 C 1.38204 * 120.76799 * 0.02562 * 16 15 14 18 18 C 1.53033 * 109.53777 * 61.36321 * 5 4 2 19 19 C 1.53187 * 109.31452 * 298.64058 * 18 5 4 20 20 N 1.46921 * 108.77882 * 54.63338 * 19 18 5 21 21 C 1.36938 * 120.63303 * 126.41641 * 20 19 18 22 22 H 1.07995 * 119.99923 * 209.01858 * 21 20 19 23 23 C 1.38809 * 119.99891 * 29.01446 * 21 20 19 24 24 N 1.31623 * 120.00312 * 15.01519 * 23 21 20 25 25 Si 1.86803 * 120.00123 * 195.01537 * 23 21 20 26 26 H 1.48500 * 109.47055 * 89.99892 * 25 23 21 27 27 H 1.48502 * 109.47300 * 209.99914 * 25 23 21 28 28 H 1.48505 * 109.46856 * 330.00207 * 25 23 21 29 29 H 1.09001 * 109.47232 * 299.71323 * 1 2 3 30 30 H 1.09002 * 109.46970 * 59.71895 * 1 2 3 31 31 H 1.09002 * 109.47068 * 179.71694 * 1 2 3 32 32 H 1.09001 * 109.49744 * 65.62554 * 4 2 1 33 33 H 1.09005 * 109.49930 * 305.53279 * 4 2 1 34 34 H 0.97003 * 119.99916 * 334.93622 * 7 5 4 35 35 H 1.08992 * 109.47462 * 60.00467 * 10 8 7 36 36 H 1.09002 * 109.47338 * 299.99858 * 10 8 7 37 37 H 1.08994 * 109.46908 * 300.00144 * 11 10 8 38 38 H 1.09001 * 109.46941 * 60.00051 * 11 10 8 39 39 H 1.07999 * 120.42196 * 0.02562 * 13 12 11 40 40 H 1.08002 * 119.61731 * 180.25921 * 14 13 12 41 41 H 1.08007 * 119.61314 * 179.97438 * 16 15 14 42 42 H 1.07995 * 120.42103 * 180.02562 * 17 16 15 43 43 H 1.09010 * 109.49606 * 58.59016 * 18 5 4 44 44 H 1.08994 * 109.49807 * 178.64855 * 18 5 4 45 45 H 1.09008 * 109.58921 * 174.42356 * 19 18 5 46 46 H 1.09000 * 109.58743 * 294.84057 * 19 18 5 47 47 H 0.96998 * 120.00432 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5675 -0.8495 -1.1691 6 1 4.0059 0.1461 -1.0994 7 7 4.0652 -1.5187 -2.3735 8 6 5.3290 -1.3045 -2.7900 9 8 6.0543 -0.5581 -2.1674 10 6 5.8407 -1.9925 -4.0293 11 6 7.2932 -1.5809 -4.2781 12 6 7.8051 -2.2694 -5.5171 13 6 8.4248 -3.5071 -5.4365 14 6 8.8779 -4.1101 -6.5946 15 7 8.7350 -3.5176 -7.7639 16 6 8.1550 -2.3387 -7.8777 17 6 7.6731 -1.6775 -6.7639 18 6 3.9569 -1.6656 0.0655 19 6 3.4650 -0.9453 1.3248 20 7 2.0226 -0.6981 1.1953 21 6 1.1537 -1.1100 2.1703 22 1 0.1360 -1.3649 1.9141 23 6 1.5812 -1.2000 3.4879 24 7 2.7045 -0.6213 3.8564 25 14 0.5621 -2.1423 4.7381 26 1 0.9961 -3.5623 4.7611 27 1 0.7531 -1.5445 6.0840 28 1 -0.8729 -2.0692 4.3631 29 1 -0.3634 0.5094 0.8925 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3633 -1.0277 -0.0051 32 1 1.7661 -0.1695 -2.1366 33 1 1.6030 -1.7270 -1.2892 34 1 3.4852 -2.1159 -2.8713 35 1 5.2293 -1.7036 -4.8840 36 1 5.7878 -3.0727 -3.8933 37 1 7.3465 -0.5008 -4.4139 38 1 7.9044 -1.8702 -3.4233 39 1 8.5486 -3.9955 -4.4812 40 1 9.3579 -5.0761 -6.5409 41 1 8.0563 -1.8843 -8.8525 42 1 7.1987 -0.7124 -6.8635 43 1 3.4983 -2.6529 0.0085 44 1 5.0411 -1.7699 0.1055 45 1 3.6518 -1.5690 2.1991 46 1 3.9903 0.0038 1.4317 47 1 3.0034 -0.6845 4.7770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755160271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:08 Heat of formation + Delta-G solvation = 3.284483 kcal Electronic energy + Delta-G solvation = -25988.201399 eV Core-core repulsion = 22363.716856 eV Total energy + Delta-G solvation = -3624.484543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53681 -39.72378 -37.73980 -35.11048 -34.51834 -32.45001 -31.60178 -31.51140 -30.71472 -29.39782 -26.46775 -25.68549 -24.52131 -23.76995 -22.26262 -21.78204 -20.82083 -20.04578 -19.19321 -17.38939 -16.77413 -16.58913 -16.22206 -15.85989 -15.79122 -15.37309 -15.08669 -14.28584 -14.06224 -13.96859 -13.82962 -13.65505 -13.37976 -13.29515 -12.94384 -12.66499 -12.56018 -12.32897 -12.04382 -11.61841 -11.25250 -11.23399 -11.11906 -10.92688 -10.90608 -10.68172 -10.31843 -10.16298 -10.05916 -9.98899 -9.79785 -9.75638 -9.71501 -9.47705 -9.33087 -8.72398 -8.43027 -6.65820 -5.77627 -3.22023 0.81427 0.91565 2.75150 3.28286 3.37164 3.43601 3.44896 3.52866 4.15005 4.32375 4.43232 4.48034 4.68078 4.80867 4.82265 4.89696 4.98318 5.22628 5.29531 5.35391 5.37055 5.40975 5.43212 5.54112 5.58618 5.69558 5.75987 5.85578 5.97751 6.08670 6.13401 6.24123 6.29584 6.38881 6.40421 6.41497 6.49458 6.63094 6.77678 6.88077 7.01644 7.07931 7.37881 7.65609 7.66379 7.71031 7.81517 8.37497 8.46256 9.21719 9.85243 10.42055 11.30854 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027632 B = 0.002232 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.090384 B =12539.933192 C =12978.206324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.081 0.919 7 N -0.725 5.725 8 C 0.508 3.492 9 O -0.541 6.541 10 C -0.134 4.134 11 C -0.069 4.069 12 C -0.035 4.035 13 C -0.170 4.170 14 C 0.098 3.902 15 N -0.492 5.492 16 C 0.098 3.902 17 C -0.171 4.171 18 C -0.146 4.146 19 C 0.174 3.826 20 N -0.588 5.588 21 C -0.250 4.250 22 H 0.070 0.930 23 C 0.001 3.999 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.395 0.605 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.020 0.980 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -4.328 -20.672 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.099 0.901 7 N -0.375 5.375 8 C 0.294 3.706 9 O -0.418 6.418 10 C -0.175 4.175 11 C -0.106 4.106 12 C -0.043 4.043 13 C -0.190 4.190 14 C -0.058 4.058 15 N -0.202 5.202 16 C -0.059 4.059 17 C -0.190 4.190 18 C -0.186 4.186 19 C 0.048 3.952 20 N -0.311 5.311 21 C -0.380 4.380 22 H 0.088 0.912 23 C -0.197 4.197 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.154 0.846 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.153 0.847 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.038 0.962 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.791 -4.176 -20.779 22.581 hybrid contribution -1.039 -0.421 1.222 1.658 sum 6.752 -4.597 -19.557 21.194 Atomic orbital electron populations 1.21797 0.95771 1.01371 1.00363 1.20360 0.93075 0.93581 0.86669 0.95574 1.22372 0.93753 1.01591 0.99613 1.21045 0.94213 0.96742 0.83358 0.90130 1.46353 1.13322 1.48550 1.29260 1.20523 0.82099 0.81971 0.85997 1.90724 1.56156 1.37468 1.57428 1.21627 0.96864 1.01959 0.97005 1.20392 0.94773 1.00969 0.94492 1.20405 0.94457 0.94059 0.95388 1.22135 1.00293 0.96035 1.00515 1.22778 0.96042 0.99359 0.87632 1.67679 1.14351 1.10323 1.27802 1.22772 0.93487 0.90818 0.98795 1.22113 1.02098 1.01808 0.93015 1.22561 0.99652 0.99560 0.96858 1.20759 0.83197 0.97303 0.93943 1.44172 1.03009 1.64987 1.18955 1.19179 0.94819 1.37783 0.86218 0.91196 1.25107 0.97854 0.99752 0.97008 1.70016 1.23322 1.44462 1.16921 0.86307 0.79814 0.79746 0.80980 1.21537 1.21805 1.20464 0.91830 0.94318 0.92804 0.92752 0.91839 0.77210 0.88946 0.88872 0.89558 0.89493 0.84634 0.82783 0.82816 0.84701 0.92756 0.92966 0.89148 0.96219 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.94 37.16 0.30 -2.15 16 2 C 0.17 3.41 3.50 -67.60 -0.24 3.18 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.16 4.84 -26.61 -0.13 -2.29 16 5 C 0.15 2.53 2.42 -67.89 -0.16 2.36 16 6 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 7 N -0.72 -9.46 5.08 -53.77 -0.27 -9.74 16 8 C 0.51 6.77 7.79 -10.99 -0.09 6.68 16 9 O -0.54 -9.56 15.64 5.56 0.09 -9.47 16 10 C -0.13 -1.18 5.68 -27.88 -0.16 -1.34 16 11 C -0.07 -0.62 4.68 -27.88 -0.13 -0.75 16 12 C -0.03 -0.29 5.17 -104.32 -0.54 -0.83 16 13 C -0.17 -1.35 9.82 -39.44 -0.39 -1.74 16 14 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 15 N -0.49 -4.84 10.36 -13.25 -0.14 -4.98 16 16 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 17 C -0.17 -1.32 9.82 -39.44 -0.39 -1.70 16 18 C -0.15 -2.85 5.65 -26.62 -0.15 -3.00 16 19 C 0.17 4.17 5.29 -3.72 -0.02 4.15 16 20 N -0.59 -14.21 2.99 -164.78 -0.49 -14.71 16 21 C -0.25 -6.59 8.60 -15.06 -0.13 -6.72 16 22 H 0.07 1.79 6.21 -52.49 -0.33 1.46 16 23 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 24 N -0.90 -26.04 11.14 55.49 0.62 -25.43 16 25 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.97 7.45 -51.93 -0.39 0.59 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.39 3.96 8.60 -40.82 -0.35 3.61 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.83 8.06 -51.93 -0.42 0.41 16 38 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 2.43 6.06 -51.92 -0.31 2.11 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -32.29 378.08 -9.87 -42.16 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.64 Total: 3.04 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.70 Total: -2.97 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.29 Total: -54.85 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.29 -9.87 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755160271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.442 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds