Wall clock time and date at job start Tue Mar 31 2020 11:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46948 * 111.00398 * 2 1 4 4 C 1.53052 * 109.38447 * 183.17580 * 3 2 1 5 5 N 1.46963 * 109.35933 * 301.63229 * 4 3 2 6 6 C 1.46908 * 110.99485 * 183.16804 * 5 4 3 7 7 C 1.50697 * 109.47025 * 66.17834 * 6 5 4 8 8 O 1.21290 * 120.00193 * 6.09945 * 7 6 5 9 9 N 1.34781 * 119.99878 * 186.10283 * 7 6 5 10 10 C 1.46496 * 120.00053 * 184.95669 * 9 7 6 11 11 C 1.50710 * 109.46849 * 90.00247 * 10 9 7 12 12 H 1.08003 * 119.99816 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00042 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99910 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00057 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47066 * 59.99820 * 15 13 11 17 17 H 1.48500 * 109.47255 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47310 * 300.00264 * 15 13 11 19 19 C 1.39930 * 119.99578 * 4.95936 * 9 7 6 20 20 C 1.38864 * 120.07021 * 290.39248 * 19 9 7 21 21 C 1.38115 * 119.92454 * 179.76913 * 20 19 9 22 22 C 1.38281 * 120.07220 * 0.48506 * 21 20 19 23 23 C 1.38280 * 120.14199 * 359.77102 * 22 21 20 24 24 C 1.38107 * 120.06767 * 359.97438 * 23 22 21 25 25 C 1.46954 * 110.89895 * 59.28980 * 5 4 3 26 26 C 1.46958 * 110.99446 * 123.80352 * 2 1 3 27 27 H 1.09009 * 109.46526 * 60.00271 * 1 2 3 28 28 H 1.08995 * 109.47308 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47303 * 300.00123 * 1 2 3 30 30 H 1.08995 * 109.48986 * 303.15511 * 3 2 1 31 31 H 1.08997 * 109.48840 * 63.19596 * 3 2 1 32 32 H 1.08994 * 109.49064 * 61.57636 * 4 3 2 33 33 H 1.09001 * 109.48957 * 181.64143 * 4 3 2 34 34 H 1.09003 * 109.46723 * 186.17979 * 6 5 4 35 35 H 1.09000 * 109.46850 * 306.17717 * 6 5 4 36 36 H 1.08999 * 109.47378 * 209.99866 * 10 9 7 37 37 H 1.09000 * 109.47387 * 330.00380 * 10 9 7 38 38 H 0.97001 * 119.99563 * 180.02562 * 14 13 11 39 39 H 1.08002 * 120.03710 * 359.97438 * 20 19 9 40 40 H 1.08001 * 119.96231 * 180.25590 * 21 20 19 41 41 H 1.08001 * 119.92679 * 179.74514 * 22 21 20 42 42 H 1.07999 * 119.96319 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.03548 * 179.97438 * 24 23 22 44 44 H 1.09005 * 109.48430 * 180.72193 * 25 5 4 45 45 H 1.08993 * 109.49102 * 60.65349 * 25 5 4 46 46 H 1.09007 * 109.48685 * 296.77163 * 26 2 1 47 47 H 1.08995 * 109.49457 * 56.82170 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3718 0.0000 4 6 3.5236 1.3294 -0.0800 5 7 4.0500 0.5657 1.0599 6 6 5.5191 0.5656 1.0600 7 6 6.0214 1.9648 1.3067 8 8 5.2389 2.8514 1.5764 9 7 7.3403 2.2310 1.2277 10 6 7.8405 3.5639 1.5732 11 6 8.1760 3.6095 3.0418 12 1 8.0307 2.7333 3.6563 13 6 8.6674 4.7699 3.6010 14 7 8.8430 5.8373 2.8530 15 14 9.0826 4.8266 5.4214 16 1 10.1255 3.8133 5.7230 17 1 9.5898 6.1776 5.7716 18 1 7.8632 4.5335 6.2166 19 6 8.2318 1.2342 0.8157 20 6 8.4858 0.1447 1.6382 21 6 9.3626 -0.8399 1.2264 22 6 9.9948 -0.7364 0.0009 23 6 9.7479 0.3500 -0.8182 24 6 8.8683 1.3353 -0.4145 25 6 3.5234 -0.8063 1.0598 26 6 1.9955 -0.7633 1.1401 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6015 1.9128 -0.8602 31 1 1.6935 1.8774 0.9171 32 1 3.8258 0.8485 -1.0102 33 1 3.9176 2.3452 -0.0507 34 1 5.8823 -0.0950 1.8473 35 1 5.8824 0.2141 0.0943 36 1 8.7355 3.7788 0.9893 37 1 7.0752 4.3078 1.3521 38 1 9.1890 6.6536 3.2464 39 1 7.9959 0.0655 2.5974 40 1 9.5575 -1.6896 1.8639 41 1 10.6831 -1.5056 -0.3169 42 1 10.2436 0.4281 -1.7745 43 1 8.6762 2.1838 -1.0545 44 1 3.9177 -1.3471 1.9202 45 1 3.8252 -1.3116 0.1426 46 1 1.6937 -0.2821 2.0704 47 1 1.6009 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020939239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:55 Heat of formation + Delta-G solvation = 20.090713 kcal Electronic energy + Delta-G solvation = -27225.528516 eV Core-core repulsion = 23601.772746 eV Total energy + Delta-G solvation = -3623.755770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.10386 -39.07964 -37.93559 -35.35186 -34.63890 -32.68937 -30.90840 -30.74655 -29.71427 -29.30818 -27.38561 -25.70181 -23.62722 -23.44954 -22.67972 -22.28756 -21.91536 -19.76603 -18.98681 -17.04149 -16.56038 -16.34537 -15.97069 -15.42000 -15.26967 -15.07859 -14.90182 -14.75873 -14.51236 -14.27997 -13.82954 -13.70575 -13.54641 -13.16072 -12.79637 -12.54462 -12.47535 -12.30647 -12.13937 -11.84654 -11.54962 -11.45346 -11.23586 -11.21598 -11.04005 -10.86589 -10.80554 -10.75640 -10.60733 -10.17528 -9.72979 -9.25489 -8.70600 -8.62701 -8.45841 -8.43013 -8.09196 -7.68682 -6.05955 -4.10534 1.55651 1.63060 3.29393 3.32380 3.36049 3.40119 3.55993 3.85123 4.00536 4.15349 4.44415 4.84054 4.90820 4.96880 5.14298 5.15906 5.17617 5.27899 5.29367 5.32693 5.34878 5.41000 5.47136 5.49989 5.57441 5.63731 5.68340 5.69113 5.76449 5.80876 5.87068 6.02786 6.07992 6.13254 6.24865 6.58512 6.71410 6.80705 6.81743 6.89023 6.95769 7.12144 7.18364 7.19627 7.37269 7.49167 7.89755 8.18591 8.36516 8.85783 9.01532 9.54058 11.02365 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010771 B = 0.004289 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.061335 B = 6526.560868 C = 8168.563288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.060 3.940 4 C 0.055 3.945 5 N -0.521 5.521 6 C 0.040 3.960 7 C 0.516 3.484 8 O -0.510 6.510 9 N -0.565 5.565 10 C 0.250 3.750 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.164 3.836 20 C -0.124 4.124 21 C -0.110 4.110 22 C -0.135 4.135 23 C -0.110 4.110 24 C -0.125 4.125 25 C 0.058 3.942 26 C 0.058 3.942 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.048 0.952 38 H 0.264 0.736 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.079 0.921 45 H 0.041 0.959 46 H 0.044 0.956 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -16.019 -7.989 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.068 4.068 4 C -0.073 4.073 5 N -0.246 5.246 6 C -0.091 4.091 7 C 0.303 3.697 8 O -0.385 6.385 9 N -0.295 5.295 10 C 0.132 3.868 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.072 3.928 20 C -0.144 4.144 21 C -0.129 4.129 22 C -0.153 4.153 23 C -0.129 4.129 24 C -0.145 4.145 25 C -0.070 4.070 26 C -0.070 4.070 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.621 -15.267 -7.818 18.769 hybrid contribution 0.492 0.126 1.140 1.248 sum -7.129 -15.141 -6.678 18.019 Atomic orbital electron populations 1.22328 0.87440 1.01774 1.00715 1.62200 1.07655 1.14590 1.42848 1.22145 0.94765 0.88675 1.01243 1.22280 0.94081 1.00221 0.90683 1.61783 1.05957 1.13031 1.43848 1.22037 0.88497 0.96489 1.02068 1.20196 0.81948 0.89892 0.77683 1.90661 1.54230 1.47334 1.46237 1.45991 1.04791 1.13643 1.65047 1.19401 0.95126 0.76371 0.95906 1.21337 1.43387 0.97890 0.93924 0.92463 1.24901 0.95439 0.95264 0.98295 1.69920 1.45418 1.02101 1.35875 0.86552 0.78748 0.77114 0.85009 1.20210 1.21127 1.20114 1.17747 0.93268 0.89515 0.92273 1.21401 0.99155 0.94828 0.99024 1.20978 0.96878 0.98633 0.96422 1.21058 1.00654 0.98508 0.95076 1.20964 0.97993 0.94173 0.99735 1.21326 0.98132 0.99464 0.95560 1.22160 0.94405 0.89502 1.00961 1.22145 0.94508 0.98165 0.92202 0.91445 0.91576 0.95575 0.90437 0.93540 0.94691 0.88478 0.88179 0.92559 0.94833 0.93353 0.92618 0.85876 0.86150 0.86411 0.86129 0.85857 0.90245 0.94099 0.93794 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.60 60.07 0.58 0.82 16 2 N -0.55 -6.50 4.97 -242.76 -1.21 -7.70 16 3 C 0.06 0.79 5.62 -3.77 -0.02 0.77 16 4 C 0.06 0.84 5.27 -3.76 -0.02 0.82 16 5 N -0.52 -8.10 4.41 -235.90 -1.04 -9.14 16 6 C 0.04 0.65 4.00 -4.97 -0.02 0.63 16 7 C 0.52 10.80 7.15 -10.98 -0.08 10.72 16 8 O -0.51 -12.61 14.21 5.55 0.08 -12.54 16 9 N -0.57 -12.16 2.50 -114.73 -0.29 -12.45 16 10 C 0.25 6.55 5.15 -5.19 -0.03 6.52 16 11 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 12 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 13 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 15 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.16 2.96 4.32 -83.69 -0.36 2.60 16 20 C -0.12 -1.98 8.56 -39.39 -0.34 -2.31 16 21 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 22 C -0.13 -1.64 10.04 -39.55 -0.40 -2.03 16 23 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 24 C -0.13 -2.00 9.75 -39.39 -0.38 -2.38 16 25 C 0.06 0.71 5.61 -3.77 -0.02 0.69 16 26 C 0.06 0.66 5.62 -3.76 -0.02 0.64 16 27 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 1.73 6.07 -51.93 -0.32 1.41 16 34 H 0.10 1.48 7.02 -51.93 -0.36 1.11 16 35 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 36 H 0.03 0.90 7.90 -51.93 -0.41 0.49 16 37 H 0.05 1.41 7.36 -51.93 -0.38 1.03 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.12 1.96 7.75 -52.49 -0.41 1.55 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 44 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -32.70 379.44 -11.09 -43.79 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.74 Total: 0.99 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.33 Total: 0.20 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -1.80 Total: -55.17 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.70 -11.09 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020939239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.885 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds