Wall clock time and date at job start Tue Mar 31 2020 11:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46948 * 111.00398 * 2 1 4 4 C 1.53052 * 109.38447 * 183.17580 * 3 2 1 5 5 N 1.46963 * 109.35933 * 301.63229 * 4 3 2 6 6 C 1.46908 * 110.99485 * 183.16804 * 5 4 3 7 7 C 1.50697 * 109.47025 * 66.17834 * 6 5 4 8 8 O 1.21290 * 120.00193 * 6.09945 * 7 6 5 9 9 N 1.34781 * 119.99878 * 186.10283 * 7 6 5 10 10 C 1.46496 * 120.00053 * 184.95669 * 9 7 6 11 11 C 1.50710 * 109.46849 * 90.00247 * 10 9 7 12 12 H 1.08003 * 119.99816 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00042 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99910 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00057 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47066 * 59.99820 * 15 13 11 17 17 H 1.48500 * 109.47255 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47310 * 300.00264 * 15 13 11 19 19 C 1.39930 * 119.99578 * 4.95936 * 9 7 6 20 20 C 1.38864 * 120.07021 * 290.39248 * 19 9 7 21 21 C 1.38115 * 119.92454 * 179.76913 * 20 19 9 22 22 C 1.38281 * 120.07220 * 0.48506 * 21 20 19 23 23 C 1.38280 * 120.14199 * 359.77102 * 22 21 20 24 24 C 1.38107 * 120.06767 * 359.97438 * 23 22 21 25 25 C 1.46954 * 110.89895 * 59.28980 * 5 4 3 26 26 C 1.46958 * 110.99446 * 123.80352 * 2 1 3 27 27 H 1.09009 * 109.46526 * 60.00271 * 1 2 3 28 28 H 1.08995 * 109.47308 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47303 * 300.00123 * 1 2 3 30 30 H 1.08995 * 109.48986 * 303.15511 * 3 2 1 31 31 H 1.08997 * 109.48840 * 63.19596 * 3 2 1 32 32 H 1.08994 * 109.49064 * 61.57636 * 4 3 2 33 33 H 1.09001 * 109.48957 * 181.64143 * 4 3 2 34 34 H 1.09003 * 109.46723 * 186.17979 * 6 5 4 35 35 H 1.09000 * 109.46850 * 306.17717 * 6 5 4 36 36 H 1.08999 * 109.47378 * 209.99866 * 10 9 7 37 37 H 1.09000 * 109.47387 * 330.00380 * 10 9 7 38 38 H 0.97001 * 119.99563 * 180.02562 * 14 13 11 39 39 H 1.08002 * 120.03710 * 359.97438 * 20 19 9 40 40 H 1.08001 * 119.96231 * 180.25590 * 21 20 19 41 41 H 1.08001 * 119.92679 * 179.74514 * 22 21 20 42 42 H 1.07999 * 119.96319 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.03548 * 179.97438 * 24 23 22 44 44 H 1.09005 * 109.48430 * 180.72193 * 25 5 4 45 45 H 1.08993 * 109.49102 * 60.65349 * 25 5 4 46 46 H 1.09007 * 109.48685 * 296.77163 * 26 2 1 47 47 H 1.08995 * 109.49457 * 56.82170 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3718 0.0000 4 6 3.5236 1.3294 -0.0800 5 7 4.0500 0.5657 1.0599 6 6 5.5191 0.5656 1.0600 7 6 6.0214 1.9648 1.3067 8 8 5.2389 2.8514 1.5764 9 7 7.3403 2.2310 1.2277 10 6 7.8405 3.5639 1.5732 11 6 8.1760 3.6095 3.0418 12 1 8.0307 2.7333 3.6563 13 6 8.6674 4.7699 3.6010 14 7 8.8430 5.8373 2.8530 15 14 9.0826 4.8266 5.4214 16 1 10.1255 3.8133 5.7230 17 1 9.5898 6.1776 5.7716 18 1 7.8632 4.5335 6.2166 19 6 8.2318 1.2342 0.8157 20 6 8.4858 0.1447 1.6382 21 6 9.3626 -0.8399 1.2264 22 6 9.9948 -0.7364 0.0009 23 6 9.7479 0.3500 -0.8182 24 6 8.8683 1.3353 -0.4145 25 6 3.5234 -0.8063 1.0598 26 6 1.9955 -0.7633 1.1401 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6015 1.9128 -0.8602 31 1 1.6935 1.8774 0.9171 32 1 3.8258 0.8485 -1.0102 33 1 3.9176 2.3452 -0.0507 34 1 5.8823 -0.0950 1.8473 35 1 5.8824 0.2141 0.0943 36 1 8.7355 3.7788 0.9893 37 1 7.0752 4.3078 1.3521 38 1 9.1890 6.6536 3.2464 39 1 7.9959 0.0655 2.5974 40 1 9.5575 -1.6896 1.8639 41 1 10.6831 -1.5056 -0.3169 42 1 10.2436 0.4281 -1.7745 43 1 8.6762 2.1838 -1.0545 44 1 3.9177 -1.3471 1.9202 45 1 3.8252 -1.3116 0.1426 46 1 1.6937 -0.2821 2.0704 47 1 1.6009 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020939239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:54 Heat of formation + Delta-G solvation = -2.116692 kcal Electronic energy + Delta-G solvation = -27226.491502 eV Core-core repulsion = 23601.772746 eV Total energy + Delta-G solvation = -3624.718756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55080 -40.18092 -39.27622 -36.68023 -36.09943 -34.78880 -31.94443 -31.89023 -31.14507 -30.55559 -29.04319 -27.06470 -24.97487 -24.63865 -24.09846 -23.44521 -23.27756 -20.82131 -20.43895 -18.74557 -18.40505 -17.73020 -17.10705 -16.91958 -16.73802 -16.19167 -16.09612 -15.95143 -15.81153 -15.64147 -15.07277 -14.89853 -14.88590 -14.38754 -14.27612 -14.18599 -13.58590 -13.44689 -13.39084 -13.26381 -13.06316 -12.87030 -12.67426 -12.56481 -12.42111 -12.28697 -12.15889 -12.09822 -11.91000 -11.81262 -11.73493 -10.85266 -10.67808 -10.06012 -9.81898 -9.46240 -9.30129 -9.22777 -8.25776 -6.40896 0.38059 0.51486 1.33871 1.38506 1.45600 1.69263 2.07164 2.36914 2.83946 2.91063 2.96670 3.04089 3.57368 3.83772 4.03725 4.05967 4.12720 4.13751 4.17529 4.24106 4.32646 4.38310 4.42809 4.54283 4.60469 4.61476 4.67172 4.67841 4.76342 4.81372 4.84759 4.95544 4.99625 4.99861 5.02895 5.10861 5.16944 5.42973 5.55039 5.63679 5.67504 5.75010 5.79890 5.90008 5.99710 6.08502 6.09967 6.11641 6.65148 6.74656 7.23085 7.39001 8.81499 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010771 B = 0.004289 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.061335 B = 6526.560868 C = 8168.563288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.551 5.551 3 C 0.067 3.933 4 C 0.060 3.940 5 N -0.543 5.543 6 C 0.061 3.939 7 C 0.507 3.493 8 O -0.563 6.563 9 N -0.567 5.567 10 C 0.268 3.732 11 C -0.543 4.543 12 H 0.053 0.947 13 C 0.010 3.990 14 N -0.928 5.928 15 Si 0.968 3.032 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.124 3.876 20 C -0.134 4.134 21 C -0.102 4.102 22 C -0.119 4.119 23 C -0.104 4.104 24 C -0.143 4.143 25 C 0.058 3.942 26 C 0.058 3.942 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.022 0.978 30 H 0.090 0.910 31 H 0.024 0.976 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.017 0.983 37 H 0.003 0.997 38 H 0.268 0.732 39 H 0.116 0.884 40 H 0.155 0.845 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.030 0.970 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 -19.924 -7.891 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.062 4.062 4 C -0.068 4.068 5 N -0.269 5.269 6 C -0.069 4.069 7 C 0.296 3.704 8 O -0.441 6.441 9 N -0.295 5.295 10 C 0.148 3.852 11 C -0.581 4.581 12 H 0.071 0.929 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.792 3.208 16 H -0.185 1.185 17 H -0.201 1.201 18 H -0.201 1.201 19 C 0.034 3.966 20 C -0.154 4.154 21 C -0.120 4.120 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.162 4.162 25 C -0.069 4.069 26 C -0.070 4.070 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.040 0.960 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.035 0.965 37 H 0.021 0.979 38 H 0.077 0.923 39 H 0.134 0.866 40 H 0.173 0.827 41 H 0.177 0.823 42 H 0.169 0.831 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.656 -19.230 -7.743 21.773 hybrid contribution 0.236 1.287 1.017 1.657 sum -6.420 -17.943 -6.727 20.209 Atomic orbital electron populations 1.22410 0.85731 1.03156 1.00940 1.62244 1.09208 1.13165 1.43033 1.22026 0.93483 0.89948 1.00720 1.22127 0.95342 0.98314 0.91019 1.61756 1.05521 1.15347 1.44231 1.21842 0.89064 0.92780 1.03242 1.21163 0.81304 0.91569 0.76360 1.90624 1.55456 1.49324 1.48690 1.45807 1.05896 1.12842 1.64984 1.18778 0.92842 0.78515 0.95032 1.21596 1.43645 0.98053 0.94841 0.92865 1.25847 0.95075 0.94724 1.03274 1.70047 1.45957 1.02702 1.38003 0.85463 0.78697 0.77853 0.78808 1.18513 1.20113 1.20123 1.18018 0.94672 0.89918 0.94011 1.21430 1.00281 0.95094 0.98590 1.21365 0.95096 0.98402 0.97138 1.21562 0.99763 0.98437 0.93966 1.21323 0.96602 0.93289 1.01063 1.21390 0.99330 1.00410 0.95103 1.22284 0.95004 0.87480 1.02119 1.22225 0.93938 0.99445 0.91362 0.90644 0.89576 0.95970 0.89201 0.95728 0.93971 0.92227 0.86491 0.91057 0.96453 0.97858 0.92309 0.86577 0.82711 0.82265 0.83139 0.87211 0.88636 0.93140 0.95206 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.60 127.69 1.23 1.65 16 2 N -0.55 -12.34 4.97 -921.95 -4.58 -16.92 16 3 C 0.07 1.81 5.62 86.31 0.49 2.29 16 4 C 0.06 1.91 5.27 86.31 0.45 2.36 16 5 N -0.54 -17.09 4.41 -900.25 -3.97 -21.05 16 6 C 0.06 2.00 4.00 85.55 0.34 2.35 16 7 C 0.51 22.65 7.15 87.66 0.63 23.28 16 8 O -0.56 -30.29 14.21 -3.06 -0.04 -30.34 16 9 N -0.57 -26.02 2.50 -635.29 -1.59 -27.61 16 10 C 0.27 15.20 5.15 85.64 0.44 15.64 16 11 C -0.54 -32.35 9.39 25.60 0.24 -32.11 16 12 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 13 C 0.01 0.59 5.46 84.65 0.46 1.05 16 14 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 15 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 16 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 C 0.12 4.58 4.32 38.15 0.16 4.75 16 20 C -0.13 -4.13 8.56 22.39 0.19 -3.93 16 21 C -0.10 -2.26 10.04 22.25 0.22 -2.04 16 22 C -0.12 -2.36 10.04 22.29 0.22 -2.13 16 23 C -0.10 -2.44 10.04 22.25 0.22 -2.22 16 24 C -0.14 -4.59 9.75 22.39 0.22 -4.38 16 25 C 0.06 1.33 5.61 86.31 0.48 1.81 16 26 C 0.06 1.22 5.62 86.31 0.49 1.70 16 27 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.09 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 2.33 6.07 -2.39 -0.01 2.32 16 34 H 0.12 3.38 7.02 -2.39 -0.02 3.37 16 35 H 0.07 2.11 7.82 -2.39 -0.02 2.09 16 36 H 0.02 1.02 7.90 -2.39 -0.02 1.00 16 37 H 0.00 0.22 7.36 -2.39 -0.02 0.20 16 38 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.12 3.64 7.75 -2.91 -0.02 3.62 16 40 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.11 3.70 8.06 -2.91 -0.02 3.67 16 44 H 0.10 1.85 8.07 -2.38 -0.02 1.83 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 47 H 0.11 1.62 8.13 -2.39 -0.02 1.60 16 Total: -1.00 -76.80 379.44 -0.44 -77.25 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.93 Total: 17.77 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.49 Total: 10.07 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -9.85 Total: -122.63 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.04 Total: -30.34 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -76.80 -0.44 -77.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020939239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.129 kcal (2) G-P(sol) polarization free energy of solvation -76.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds