Wall clock time and date at job start Tue Mar 31 2020 11:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46907 * 110.99647 * 2 1 4 4 C 1.50697 * 109.47264 * 293.95681 * 3 2 1 5 5 O 1.21299 * 120.00153 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00064 * 179.97438 * 4 3 2 7 7 C 1.37100 * 119.99927 * 180.02562 * 6 4 3 8 8 H 1.07990 * 120.00299 * 0.02562 * 7 6 4 9 9 C 1.38949 * 119.99752 * 180.02562 * 7 6 4 10 10 N 1.31418 * 120.00005 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00056 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46862 * 60.00221 * 11 9 7 13 13 H 1.48501 * 109.47441 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47288 * 300.00378 * 11 9 7 15 15 C 1.46891 * 111.00192 * 123.95511 * 2 1 3 16 16 C 1.50697 * 109.47213 * 66.04936 * 15 2 1 17 17 C 1.38116 * 120.03829 * 262.49225 * 16 15 2 18 18 C 1.38271 * 120.07863 * 179.79021 * 17 16 15 19 19 C 1.38311 * 120.14545 * 0.46679 * 18 17 16 20 20 C 1.38082 * 120.07205 * 359.78732 * 19 18 17 21 21 C 1.38894 * 120.03963 * 82.76670 * 16 15 2 22 22 N 1.39680 * 120.07214 * 359.95950 * 21 16 15 23 23 C 1.48533 * 110.99814 * 176.37882 * 22 21 16 24 24 C 1.54934 * 103.22552 * 159.71753 * 23 22 21 25 25 C 1.54591 * 102.92390 * 322.58649 * 24 23 22 26 26 C 1.47901 * 110.99764 * 293.77305 * 22 21 16 27 27 H 1.08995 * 109.47514 * 59.99727 * 1 2 3 28 28 H 1.09002 * 109.46827 * 299.99105 * 1 2 3 29 29 H 1.09005 * 109.46820 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46823 * 53.95856 * 3 2 1 31 31 H 1.09000 * 109.47153 * 173.95770 * 3 2 1 32 32 H 0.96999 * 119.99986 * 0.02562 * 6 4 3 33 33 H 0.96996 * 119.99479 * 179.97438 * 10 9 7 34 34 H 1.09011 * 109.47126 * 186.04765 * 15 2 1 35 35 H 1.08998 * 109.47510 * 306.04750 * 15 2 1 36 36 H 1.08006 * 119.96674 * 0.02562 * 17 16 15 37 37 H 1.07993 * 119.92826 * 180.23304 * 18 17 16 38 38 H 1.07996 * 119.96300 * 179.77057 * 19 18 17 39 39 H 1.08002 * 120.03536 * 179.97438 * 20 19 18 40 40 H 1.09007 * 110.66723 * 278.15496 * 23 22 21 41 41 H 1.08997 * 110.66972 * 41.28379 * 23 22 21 42 42 H 1.08999 * 110.72366 * 204.22584 * 24 23 22 43 43 H 1.09003 * 110.72125 * 80.94739 * 24 23 22 44 44 H 1.09000 * 110.30933 * 263.04082 * 25 24 23 45 45 H 1.08999 * 110.31204 * 140.87199 * 25 24 23 46 46 H 1.09002 * 109.91826 * 333.50888 * 26 22 21 47 47 H 1.08998 * 109.91941 * 94.80620 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 8 1.0045 1.4457 -2.1408 6 7 2.0178 3.3203 -1.5232 7 6 1.6911 3.9352 -2.7042 8 1 1.1281 3.3997 -3.4542 9 6 2.0844 5.2476 -2.9362 10 7 2.7699 5.8991 -2.0238 11 14 1.6399 6.0852 -4.5456 12 1 0.1627 6.1220 -4.6929 13 1 2.1725 7.4714 -4.5458 14 1 2.2315 5.3279 -5.6777 15 6 1.9955 -0.7659 1.1375 16 6 1.6371 -2.2204 0.9727 17 6 0.5338 -2.7384 1.6223 18 6 0.2017 -4.0718 1.4683 19 6 0.9781 -4.8934 0.6713 20 6 2.0854 -4.3831 0.0232 21 6 2.4191 -3.0428 0.1720 22 7 3.5384 -2.5233 -0.4825 23 6 4.2730 -3.5903 -1.2092 24 6 5.1036 -2.8015 -2.2524 25 6 4.1426 -1.6656 -2.6721 26 6 3.1409 -1.5361 -1.5097 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.5611 1.9274 0.8310 31 1 3.0797 1.3446 0.1082 32 1 2.5232 3.8015 -0.8494 33 1 3.0447 6.8151 -2.1859 34 1 3.0799 -0.6610 1.1755 35 1 1.5612 -0.3873 2.0627 36 1 -0.0725 -2.1005 2.2484 37 1 -0.6637 -4.4735 1.9743 38 1 0.7181 -5.9353 0.5560 39 1 2.6915 -5.0253 -0.5986 40 1 4.9273 -4.1376 -0.5305 41 1 3.5772 -4.2678 -1.7041 42 1 5.3506 -3.4328 -3.1059 43 1 6.0070 -2.3944 -1.7981 44 1 3.6221 -1.9311 -3.5923 45 1 4.6927 -0.7337 -2.8031 46 1 2.1326 -1.7528 -1.8625 47 1 3.1833 -0.5296 -1.0935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066656978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:17 Heat of formation + Delta-G solvation = 21.481935 kcal Electronic energy + Delta-G solvation = -27524.758681 eV Core-core repulsion = 23901.063239 eV Total energy + Delta-G solvation = -3623.695442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51628 -38.49500 -37.67019 -36.22993 -33.84757 -32.59126 -31.60347 -31.18882 -28.84407 -28.45665 -27.70585 -26.62510 -24.65740 -23.20200 -22.52660 -21.22945 -20.46705 -19.91900 -19.12349 -17.82395 -17.29380 -16.15787 -16.05069 -15.45417 -15.35613 -15.09793 -14.65027 -14.58741 -14.37971 -13.82986 -13.65812 -13.41368 -13.28901 -13.01260 -12.84157 -12.53494 -12.10050 -12.04710 -11.84331 -11.77443 -11.51154 -11.28339 -11.26128 -11.15955 -11.05615 -10.90873 -10.89555 -10.78162 -10.43357 -10.33028 -10.19930 -9.44886 -9.30229 -8.79476 -8.40232 -7.95041 -7.85898 -7.68815 -6.40001 -3.80635 1.39315 1.43725 3.20610 3.26385 3.30522 3.66555 3.93219 4.03149 4.17457 4.41277 4.71501 4.76922 4.85325 4.93577 5.04927 5.10380 5.12632 5.26907 5.31098 5.39662 5.47514 5.59570 5.62040 5.66412 5.72128 5.79119 5.81852 5.85642 5.92943 6.00695 6.01811 6.03319 6.06397 6.18247 6.30790 6.37060 6.40166 6.49650 6.57543 6.61543 6.71986 6.86739 7.08681 7.32459 7.43418 7.47371 7.56589 8.08209 8.64081 9.20074 9.56914 10.08925 10.77724 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.003523 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.827484 B = 7945.110285 C = 8914.856059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.508 5.508 3 C 0.042 3.958 4 C 0.445 3.555 5 O -0.576 6.576 6 N -0.565 5.565 7 C -0.298 4.298 8 H 0.102 0.898 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.094 3.906 16 C -0.084 4.084 17 C -0.093 4.093 18 C -0.149 4.149 19 C -0.100 4.100 20 C -0.176 4.176 21 C 0.126 3.874 22 N -0.474 5.474 23 C 0.027 3.973 24 C -0.123 4.123 25 C -0.135 4.135 26 C 0.056 3.944 27 H 0.095 0.905 28 H 0.013 0.987 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 -17.840 7.030 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.232 5.232 3 C -0.089 4.089 4 C 0.231 3.769 5 O -0.460 6.460 6 N -0.201 5.201 7 C -0.427 4.427 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.034 4.034 16 C -0.086 4.086 17 C -0.112 4.112 18 C -0.167 4.167 19 C -0.119 4.119 20 C -0.197 4.197 21 C 0.028 3.972 22 N -0.190 5.190 23 C -0.100 4.100 24 C -0.162 4.162 25 C -0.174 4.174 26 C -0.068 4.068 27 H 0.113 0.887 28 H 0.031 0.969 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.610 -17.950 6.374 19.116 hybrid contribution -0.637 0.780 -0.054 1.008 sum 0.973 -17.170 6.320 18.322 Atomic orbital electron populations 1.22576 0.86981 1.01510 1.01721 1.61875 1.08608 1.12172 1.40533 1.21917 1.00703 0.89065 0.97261 1.19709 0.85418 0.82914 0.88878 1.90487 1.43769 1.64644 1.47086 1.41858 1.49490 1.10766 1.18024 1.19627 1.32902 0.95417 0.94784 0.88015 1.25241 0.96863 0.96668 0.99133 1.69607 1.38032 1.12290 1.34451 0.85945 0.78876 0.77954 0.81599 1.19969 1.21021 1.19922 1.21005 1.01055 0.89473 0.91820 1.19399 0.95830 0.95235 0.98143 1.20942 0.95974 0.95297 0.99017 1.20977 1.00552 0.93968 1.01242 1.20930 0.94867 0.99294 0.96824 1.21381 0.99350 0.95859 1.03104 1.18869 0.90172 0.92421 0.95786 1.61935 1.18708 1.12356 1.26001 1.23442 0.96731 0.94014 0.95779 1.22488 0.98574 0.97154 0.97937 1.22495 0.97305 0.99085 0.98478 1.23171 0.97181 0.97345 0.89117 0.88679 0.96870 0.92164 0.93450 0.89385 0.77537 0.91867 0.89297 0.94560 0.86312 0.86510 0.86528 0.85618 0.90112 0.92596 0.91226 0.90844 0.91673 0.90807 0.92395 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.95 60.07 0.54 0.87 16 2 N -0.51 -8.28 1.92 -245.82 -0.47 -8.76 16 3 C 0.04 0.73 4.68 -4.97 -0.02 0.71 16 4 C 0.45 10.16 7.51 -10.99 -0.08 10.08 16 5 O -0.58 -14.87 13.89 5.54 0.08 -14.79 16 6 N -0.56 -14.03 5.29 -10.97 -0.06 -14.08 16 7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 9 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 10 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 11 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.09 1.31 4.08 -4.98 -0.02 1.29 16 16 C -0.08 -1.14 4.57 -104.43 -0.48 -1.62 16 17 C -0.09 -1.13 8.42 -39.61 -0.33 -1.47 16 18 C -0.15 -1.64 10.04 -39.54 -0.40 -2.04 16 19 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 20 C -0.18 -2.14 8.91 -39.38 -0.35 -2.49 16 21 C 0.13 1.73 5.23 -83.79 -0.44 1.29 16 22 N -0.47 -6.48 4.68 -167.16 -0.78 -7.26 16 23 C 0.03 0.31 5.56 -1.90 -0.01 0.30 16 24 C -0.12 -1.36 7.06 -24.87 -0.18 -1.53 16 25 C -0.14 -1.86 6.93 -25.38 -0.18 -2.03 16 26 C 0.06 0.87 4.76 -2.75 -0.01 0.85 16 27 H 0.09 1.90 5.88 -51.93 -0.31 1.59 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.93 6.30 -51.93 -0.33 0.61 16 30 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 31 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 32 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.09 1.26 7.31 -51.92 -0.38 0.88 16 35 H 0.04 0.47 8.01 -51.93 -0.42 0.05 16 36 H 0.12 1.28 8.05 -52.48 -0.42 0.86 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.32 5.58 -52.49 -0.29 1.03 16 40 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.06 0.60 5.95 -51.93 -0.31 0.29 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 47 H 0.11 1.91 4.84 -51.93 -0.25 1.65 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -29.59 365.40 -9.77 -39.36 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.14 Total: 12.88 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.60 Total: -5.11 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.59 Total: -53.79 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.79 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.59 -9.77 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066656978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.844 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds