Wall clock time and date at job start Tue Mar 31 2020 11:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46907 * 110.99647 * 2 1 4 4 C 1.50697 * 109.47264 * 293.95681 * 3 2 1 5 5 O 1.21299 * 120.00153 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00064 * 179.97438 * 4 3 2 7 7 C 1.37100 * 119.99927 * 180.02562 * 6 4 3 8 8 H 1.07990 * 120.00299 * 0.02562 * 7 6 4 9 9 C 1.38949 * 119.99752 * 180.02562 * 7 6 4 10 10 N 1.31418 * 120.00005 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00056 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46862 * 60.00221 * 11 9 7 13 13 H 1.48501 * 109.47441 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47288 * 300.00378 * 11 9 7 15 15 C 1.46891 * 111.00192 * 123.95511 * 2 1 3 16 16 C 1.50697 * 109.47213 * 66.04936 * 15 2 1 17 17 C 1.38116 * 120.03829 * 262.49225 * 16 15 2 18 18 C 1.38271 * 120.07863 * 179.79021 * 17 16 15 19 19 C 1.38311 * 120.14545 * 0.46679 * 18 17 16 20 20 C 1.38082 * 120.07205 * 359.78732 * 19 18 17 21 21 C 1.38894 * 120.03963 * 82.76670 * 16 15 2 22 22 N 1.39680 * 120.07214 * 359.95950 * 21 16 15 23 23 C 1.48533 * 110.99814 * 176.37882 * 22 21 16 24 24 C 1.54934 * 103.22552 * 159.71753 * 23 22 21 25 25 C 1.54591 * 102.92390 * 322.58649 * 24 23 22 26 26 C 1.47901 * 110.99764 * 293.77305 * 22 21 16 27 27 H 1.08995 * 109.47514 * 59.99727 * 1 2 3 28 28 H 1.09002 * 109.46827 * 299.99105 * 1 2 3 29 29 H 1.09005 * 109.46820 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46823 * 53.95856 * 3 2 1 31 31 H 1.09000 * 109.47153 * 173.95770 * 3 2 1 32 32 H 0.96999 * 119.99986 * 0.02562 * 6 4 3 33 33 H 0.96996 * 119.99479 * 179.97438 * 10 9 7 34 34 H 1.09011 * 109.47126 * 186.04765 * 15 2 1 35 35 H 1.08998 * 109.47510 * 306.04750 * 15 2 1 36 36 H 1.08006 * 119.96674 * 0.02562 * 17 16 15 37 37 H 1.07993 * 119.92826 * 180.23304 * 18 17 16 38 38 H 1.07996 * 119.96300 * 179.77057 * 19 18 17 39 39 H 1.08002 * 120.03536 * 179.97438 * 20 19 18 40 40 H 1.09007 * 110.66723 * 278.15496 * 23 22 21 41 41 H 1.08997 * 110.66972 * 41.28379 * 23 22 21 42 42 H 1.08999 * 110.72366 * 204.22584 * 24 23 22 43 43 H 1.09003 * 110.72125 * 80.94739 * 24 23 22 44 44 H 1.09000 * 110.30933 * 263.04082 * 25 24 23 45 45 H 1.08999 * 110.31204 * 140.87199 * 25 24 23 46 46 H 1.09002 * 109.91826 * 333.50888 * 26 22 21 47 47 H 1.08998 * 109.91941 * 94.80620 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 8 1.0045 1.4457 -2.1408 6 7 2.0178 3.3203 -1.5232 7 6 1.6911 3.9352 -2.7042 8 1 1.1281 3.3997 -3.4542 9 6 2.0844 5.2476 -2.9362 10 7 2.7699 5.8991 -2.0238 11 14 1.6399 6.0852 -4.5456 12 1 0.1627 6.1220 -4.6929 13 1 2.1725 7.4714 -4.5458 14 1 2.2315 5.3279 -5.6777 15 6 1.9955 -0.7659 1.1375 16 6 1.6371 -2.2204 0.9727 17 6 0.5338 -2.7384 1.6223 18 6 0.2017 -4.0718 1.4683 19 6 0.9781 -4.8934 0.6713 20 6 2.0854 -4.3831 0.0232 21 6 2.4191 -3.0428 0.1720 22 7 3.5384 -2.5233 -0.4825 23 6 4.2730 -3.5903 -1.2092 24 6 5.1036 -2.8015 -2.2524 25 6 4.1426 -1.6656 -2.6721 26 6 3.1409 -1.5361 -1.5097 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.5611 1.9274 0.8310 31 1 3.0797 1.3446 0.1082 32 1 2.5232 3.8015 -0.8494 33 1 3.0447 6.8151 -2.1859 34 1 3.0799 -0.6610 1.1755 35 1 1.5612 -0.3873 2.0627 36 1 -0.0725 -2.1005 2.2484 37 1 -0.6637 -4.4735 1.9743 38 1 0.7181 -5.9353 0.5560 39 1 2.6915 -5.0253 -0.5986 40 1 4.9273 -4.1376 -0.5305 41 1 3.5772 -4.2678 -1.7041 42 1 5.3506 -3.4328 -3.1059 43 1 6.0070 -2.3944 -1.7981 44 1 3.6221 -1.9311 -3.5923 45 1 4.6927 -0.7337 -2.8031 46 1 2.1326 -1.7528 -1.8625 47 1 3.1833 -0.5296 -1.0935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066656978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:16 Heat of formation + Delta-G solvation = 4.208132 kcal Electronic energy + Delta-G solvation = -27525.507729 eV Core-core repulsion = 23901.063239 eV Total energy + Delta-G solvation = -3624.444491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.52750 -40.21768 -38.68565 -37.62104 -35.82481 -33.56471 -33.25048 -32.60988 -29.91928 -29.46198 -29.17966 -27.81054 -26.50175 -24.13945 -23.82266 -22.34969 -21.40684 -20.99081 -20.90157 -19.82051 -18.30458 -17.72034 -17.20547 -16.68522 -16.53205 -16.36435 -16.28928 -15.95997 -15.48836 -15.37116 -15.03447 -15.01308 -14.50112 -14.04007 -13.86954 -13.75867 -13.53107 -13.42601 -13.10812 -13.03740 -12.85531 -12.79663 -12.60302 -12.48850 -12.39852 -12.15817 -12.12835 -12.06662 -11.91693 -11.79914 -11.42380 -11.35622 -10.31930 -10.23263 -9.96306 -9.72705 -9.11252 -8.76922 -8.43562 -5.91613 0.46528 0.51136 1.40271 1.41848 1.52445 2.09885 2.29612 2.66170 2.93658 3.21752 3.23500 3.48789 3.74692 3.81326 3.90513 3.99002 4.11157 4.22895 4.26743 4.32262 4.40741 4.42360 4.48632 4.53970 4.57234 4.63820 4.66405 4.72424 4.77017 4.81669 4.93472 4.96149 5.01417 5.08226 5.18306 5.19867 5.26610 5.41231 5.43521 5.49774 5.57511 5.66800 5.88773 5.93865 6.08890 6.10955 6.20500 6.47968 6.64498 7.16645 7.60849 8.16960 8.73736 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.003523 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.827484 B = 7945.110285 C = 8914.856059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.517 5.517 3 C 0.055 3.945 4 C 0.447 3.553 5 O -0.608 6.608 6 N -0.576 5.576 7 C -0.328 4.328 8 H 0.079 0.921 9 C -0.013 4.013 10 N -0.922 5.922 11 Si 0.990 3.010 12 H -0.273 1.273 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.102 3.898 16 C -0.104 4.104 17 C -0.100 4.100 18 C -0.149 4.149 19 C -0.101 4.101 20 C -0.183 4.183 21 C 0.103 3.897 22 N -0.478 5.478 23 C 0.027 3.973 24 C -0.113 4.113 25 C -0.139 4.139 26 C 0.068 3.932 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.394 0.606 33 H 0.276 0.724 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.026 0.974 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 -19.476 7.916 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.241 5.241 3 C -0.076 4.076 4 C 0.234 3.766 5 O -0.494 6.494 6 N -0.213 5.213 7 C -0.458 4.458 8 H 0.097 0.903 9 C -0.213 4.213 10 N -0.563 5.563 11 Si 0.814 3.186 12 H -0.198 1.198 13 H -0.196 1.196 14 H -0.198 1.198 15 C -0.025 4.025 16 C -0.106 4.106 17 C -0.119 4.119 18 C -0.167 4.167 19 C -0.119 4.119 20 C -0.203 4.203 21 C 0.005 3.995 22 N -0.195 5.195 23 C -0.099 4.099 24 C -0.151 4.151 25 C -0.178 4.178 26 C -0.057 4.057 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.228 0.772 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.833 -19.603 7.290 20.994 hybrid contribution -0.755 1.170 -0.287 1.422 sum 1.078 -18.433 7.003 19.747 Atomic orbital electron populations 1.22381 0.87297 1.01674 1.00427 1.61809 1.08385 1.11444 1.42497 1.21756 1.01841 0.89645 0.94348 1.20626 0.83637 0.82140 0.90176 1.90471 1.44814 1.65256 1.48840 1.41918 1.50231 1.11581 1.17609 1.19590 1.34192 0.96308 0.95697 0.90318 1.25986 0.96393 0.96678 1.02202 1.69673 1.38258 1.12652 1.35752 0.85037 0.78572 0.77316 0.77717 1.19789 1.19626 1.19760 1.20944 1.00722 0.89665 0.91161 1.19498 0.96907 0.94909 0.99280 1.21156 0.95584 0.96209 0.98986 1.21331 1.01096 0.93500 1.00804 1.21306 0.94082 1.00683 0.95861 1.21632 0.99966 0.95384 1.03332 1.19087 0.90677 0.93365 0.96368 1.61916 1.19044 1.12965 1.25535 1.23540 0.96777 0.93592 0.95983 1.22471 0.97814 0.96175 0.98670 1.22488 0.97599 0.99868 0.97807 1.22859 0.95912 0.96923 0.90040 0.92535 0.95383 0.91244 0.91626 0.87706 0.77198 0.91427 0.89697 0.93162 0.85132 0.84017 0.83809 0.84188 0.88450 0.92002 0.89095 0.90415 0.92078 0.92013 0.95570 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 8.95 127.69 1.14 2.15 16 2 N -0.52 -16.98 1.92 -931.63 -1.79 -18.77 16 3 C 0.06 1.94 4.68 85.55 0.40 2.34 16 4 C 0.45 21.08 7.51 87.66 0.66 21.73 16 5 O -0.61 -32.91 13.89 -3.09 -0.04 -32.95 16 6 N -0.58 -29.50 5.29 -306.99 -1.62 -31.13 16 7 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 8 H 0.08 4.74 7.16 -2.92 -0.02 4.72 16 9 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 10 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 11 Si 0.99 43.20 29.55 68.60 2.03 45.22 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 15 C 0.10 2.76 4.08 85.56 0.35 3.11 16 16 C -0.10 -2.72 4.57 -19.74 -0.09 -2.81 16 17 C -0.10 -2.25 8.42 22.25 0.19 -2.06 16 18 C -0.15 -2.87 10.04 22.30 0.22 -2.65 16 19 C -0.10 -1.92 10.04 22.25 0.22 -1.70 16 20 C -0.18 -4.06 8.91 22.40 0.20 -3.86 16 21 C 0.10 2.73 5.23 38.21 0.20 2.93 16 22 N -0.48 -12.80 4.68 -682.78 -3.20 -15.99 16 23 C 0.03 0.57 5.56 86.65 0.48 1.05 16 24 C -0.11 -2.34 7.06 31.80 0.22 -2.11 16 25 C -0.14 -3.90 6.93 31.47 0.22 -3.68 16 26 C 0.07 2.16 4.76 86.45 0.41 2.57 16 27 H 0.06 2.34 5.88 -2.39 -0.01 2.33 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 2.15 6.30 -2.38 -0.02 2.13 16 30 H 0.07 2.09 8.12 -2.38 -0.02 2.07 16 31 H 0.10 3.35 7.70 -2.39 -0.02 3.33 16 32 H 0.39 19.38 7.90 -92.71 -0.73 18.64 16 33 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.08 2.36 7.31 -2.38 -0.02 2.34 16 35 H 0.05 1.21 8.01 -2.39 -0.02 1.20 16 36 H 0.13 2.52 8.05 -2.91 -0.02 2.50 16 37 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.14 2.59 5.58 -2.91 -0.02 2.58 16 40 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.06 1.21 5.95 -2.39 -0.01 1.20 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.03 0.97 7.72 -2.39 -0.02 0.95 16 47 H 0.09 3.15 4.84 -2.39 -0.01 3.13 16 Total: -1.00 -65.66 365.40 2.02 -63.64 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: 0.25 Total: 40.78 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 6.11 Total: -1.01 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -6.33 Total: -115.68 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.04 Total: -32.95 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -65.66 2.02 -63.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066656978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.850 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds