Wall clock time and date at job start Tue Mar 31 2020 11:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99935 * 2 1 4 4 C 1.46898 * 110.99976 * 123.95562 * 2 1 3 5 5 C 1.53001 * 109.47232 * 66.04598 * 4 2 1 6 6 C 1.53000 * 109.47231 * 179.97438 * 5 4 2 7 7 N 1.46493 * 109.47156 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99811 * 90.00429 * 7 6 5 9 9 C 1.50703 * 109.47289 * 89.99713 * 8 7 6 10 10 H 1.07994 * 119.99399 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99789 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99734 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00111 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47123 * 89.99915 * 13 11 9 15 15 H 1.48498 * 109.47161 * 209.99603 * 13 11 9 16 16 H 1.48497 * 109.47329 * 329.99749 * 13 11 9 17 17 C 1.34778 * 120.00131 * 269.99999 * 7 6 5 18 18 O 1.21663 * 120.00014 * 0.02562 * 17 7 6 19 19 C 1.46651 * 119.99683 * 180.02562 * 17 7 6 20 20 C 1.34642 * 119.99833 * 180.02562 * 19 17 7 21 21 C 1.47399 * 119.99843 * 179.97438 * 20 19 17 22 22 C 1.40138 * 120.95509 * 359.71510 * 21 20 19 23 23 C 1.37996 * 118.96948 * 179.75280 * 22 21 20 24 24 N 1.31880 * 120.92415 * 0.54055 * 23 22 21 25 25 C 1.31889 * 122.11512 * 359.73494 * 24 23 22 26 26 C 1.38000 * 120.92387 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46920 * 296.04905 * 1 2 3 28 28 H 1.08998 * 109.47104 * 56.04320 * 1 2 3 29 29 H 1.08994 * 109.47176 * 176.04451 * 1 2 3 30 30 H 1.09001 * 109.47042 * 183.95541 * 3 2 1 31 31 H 1.09002 * 109.47196 * 303.95428 * 3 2 1 32 32 H 1.08996 * 109.47362 * 63.95315 * 3 2 1 33 33 H 1.08997 * 109.46955 * 306.04046 * 4 2 1 34 34 H 1.08996 * 109.46642 * 186.04519 * 4 2 1 35 35 H 1.09001 * 109.46881 * 59.99852 * 5 4 2 36 36 H 1.08997 * 109.46990 * 300.00041 * 5 4 2 37 37 H 1.09006 * 109.46591 * 59.99524 * 6 5 4 38 38 H 1.09005 * 109.46719 * 300.00285 * 6 5 4 39 39 H 1.09001 * 109.47060 * 210.00163 * 8 7 6 40 40 H 1.09004 * 109.47073 * 329.99652 * 8 7 6 41 41 H 0.97007 * 120.00011 * 180.02562 * 12 11 9 42 42 H 1.08001 * 120.00397 * 359.97438 * 19 17 7 43 43 H 1.08001 * 119.99509 * 359.97438 * 20 19 17 44 44 H 1.08006 * 120.50875 * 0.02562 * 22 21 20 45 45 H 1.07993 * 119.53750 * 180.27294 * 23 22 21 46 46 H 1.07998 * 119.53841 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.51739 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1803 -3.0406 2.1548 7 7 1.8313 -4.4543 1.9949 8 6 2.7388 -5.3568 1.2819 9 6 3.7103 -5.9673 2.2590 10 1 3.6567 -5.7092 3.3063 11 6 4.6667 -6.8561 1.8159 12 7 5.5148 -7.3885 2.6685 13 14 4.7588 -7.3029 0.0045 14 1 5.6695 -6.3594 -0.6924 15 1 5.2768 -8.6873 -0.1381 16 1 3.4034 -7.2172 -0.5960 17 6 0.6753 -4.9248 2.5038 18 8 -0.0785 -4.1753 3.0955 19 6 0.3263 -6.3402 2.3442 20 6 -0.8287 -6.8101 2.8521 21 6 -1.1798 -8.2326 2.6912 22 6 -0.3292 -9.1122 2.0081 23 6 -0.6959 -10.4369 1.8861 24 7 -1.8324 -10.8749 2.3919 25 6 -2.6649 -10.0810 3.0370 26 6 -2.3767 -8.7428 3.2118 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0251 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8723 0.9232 33 1 1.5612 -0.3872 2.0627 34 1 3.0797 -0.6611 1.1755 35 1 2.0658 -2.6213 0.0450 36 1 0.5472 -2.3475 0.9322 37 1 1.7464 -2.6618 3.0802 38 1 3.2647 -2.9356 2.1923 39 1 2.1620 -6.1469 0.8012 40 1 3.2883 -4.7964 0.5254 41 1 6.1879 -8.0135 2.3568 42 1 0.9953 -7.0054 1.8185 43 1 -1.4979 -6.1447 3.3773 44 1 0.6011 -8.7596 1.5877 45 1 -0.0451 -11.1237 1.3654 46 1 -3.5845 -10.4840 3.4347 47 1 -3.0630 -8.0987 3.7415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068239633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:03 Heat of formation + Delta-G solvation = 22.871436 kcal Electronic energy + Delta-G solvation = -25966.472876 eV Core-core repulsion = 22342.837687 eV Total energy + Delta-G solvation = -3623.635189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04723 -39.32603 -37.67237 -35.47704 -34.57922 -32.91528 -31.81971 -31.25695 -30.25194 -28.10186 -27.66766 -26.38469 -24.50549 -23.42521 -22.72805 -22.55820 -20.88288 -20.34979 -18.14655 -17.40052 -17.07946 -16.30287 -16.02513 -15.80375 -15.48407 -15.40143 -15.07253 -14.72155 -14.42236 -14.05972 -13.91347 -13.79803 -13.58987 -13.26219 -13.01891 -12.61711 -12.48644 -12.29326 -12.17840 -11.93482 -11.84408 -11.60677 -11.49355 -11.36301 -11.18260 -10.93636 -10.82656 -10.68839 -10.37983 -10.21336 -9.69327 -9.50228 -9.35476 -9.15155 -8.78665 -8.57854 -8.42658 -7.83950 -6.27346 -4.29932 0.62628 1.17216 2.22716 3.12639 3.19789 3.22688 3.61351 3.72364 3.96065 4.06036 4.20345 4.46505 4.64903 4.77965 4.99867 5.03147 5.07109 5.07395 5.15359 5.19827 5.30492 5.35124 5.43541 5.50355 5.56258 5.58919 5.65910 5.70986 5.73152 5.81957 5.83324 5.91245 5.99725 6.05952 6.09127 6.31776 6.33976 6.49113 6.54330 6.58547 6.68022 6.74921 6.95894 6.98111 7.24409 7.36294 7.98193 8.00842 8.32540 8.73362 8.81797 9.30945 10.85167 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.003859 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.490026 B = 7253.345571 C = 9549.120266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.130 4.130 6 C 0.121 3.879 7 N -0.579 5.579 8 C 0.206 3.794 9 C -0.543 4.543 10 H 0.079 0.921 11 C 0.078 3.922 12 N -0.888 5.888 13 Si 0.868 3.132 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.263 1.263 17 C 0.546 3.454 18 O -0.570 6.570 19 C -0.149 4.149 20 C -0.072 4.072 21 C -0.010 4.010 22 C -0.159 4.159 23 C 0.100 3.900 24 N -0.491 5.491 25 C 0.094 3.906 26 C -0.162 4.162 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.267 0.733 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 5.771 -4.230 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.070 4.070 5 C -0.169 4.169 6 C -0.003 4.003 7 N -0.308 5.308 8 C 0.085 3.915 9 C -0.582 4.582 10 H 0.097 0.903 11 C -0.126 4.126 12 N -0.525 5.525 13 Si 0.694 3.306 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.188 1.188 17 C 0.336 3.664 18 O -0.452 6.452 19 C -0.170 4.170 20 C -0.092 4.092 21 C -0.018 4.018 22 C -0.179 4.179 23 C -0.056 4.056 24 N -0.201 5.201 25 C -0.063 4.063 26 C -0.182 4.182 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.159 0.841 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.175 0.825 46 H 0.172 0.828 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.475 4.922 -4.460 13.259 hybrid contribution 0.430 0.937 -0.056 1.032 sum -11.045 5.859 -4.516 13.294 Atomic orbital electron populations 1.22427 0.87499 1.02626 1.00082 1.61975 1.08043 1.13526 1.43692 1.22370 1.00827 0.88955 1.00201 1.22078 1.00228 0.93754 0.90954 1.21957 1.01664 0.93458 0.99776 1.21268 1.00684 0.80524 0.97826 1.47780 1.19394 1.09380 1.54204 1.19899 0.89386 0.89196 0.93018 1.21372 1.14401 1.26181 0.96198 0.90329 1.24868 0.94959 0.95349 0.97438 1.69889 1.18294 1.29819 1.34511 0.86975 0.79276 0.78579 0.85727 1.19759 1.20747 1.18789 1.18218 0.81386 0.87960 0.78853 1.90706 1.51160 1.59398 1.43960 1.23419 0.97158 0.95946 1.00463 1.22145 0.96968 0.92209 0.97885 1.19450 0.93797 0.93592 0.94964 1.22575 1.00976 0.94683 0.99676 1.22696 0.93081 0.93788 0.96052 1.67570 1.04002 1.39295 1.09203 1.22635 0.98322 0.90114 0.95199 1.22328 0.97266 0.97182 1.01384 0.95709 0.91746 0.90911 0.91315 0.91603 0.95825 0.94666 0.90496 0.90981 0.91752 0.90743 0.89956 0.94790 0.94893 0.92270 0.84149 0.84646 0.83863 0.82540 0.82836 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.07 0.56 0.80 16 2 N -0.55 -6.71 5.02 -251.27 -1.26 -7.97 16 3 C 0.02 0.24 9.57 60.06 0.57 0.82 16 4 C 0.06 0.75 4.96 -3.82 -0.02 0.73 16 5 C -0.13 -1.93 5.46 -26.73 -0.15 -2.08 16 6 C 0.12 2.09 5.41 -4.05 -0.02 2.06 16 7 N -0.58 -11.44 2.46 -176.61 -0.43 -11.87 16 8 C 0.21 4.36 3.94 -5.19 -0.02 4.34 16 9 C -0.54 -13.82 9.94 -34.44 -0.34 -14.17 16 10 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 11 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 12 N -0.89 -25.18 13.96 55.43 0.77 -24.40 16 13 Si 0.87 19.06 27.47 -169.99 -4.67 14.39 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 17 C 0.55 10.89 7.61 -12.86 -0.10 10.79 16 18 O -0.57 -12.18 15.81 5.22 0.08 -12.09 16 19 C -0.15 -2.64 8.63 -37.46 -0.32 -2.97 16 20 C -0.07 -1.12 9.50 -37.13 -0.35 -1.47 16 21 C -0.01 -0.14 5.90 -104.74 -0.62 -0.76 16 22 C -0.16 -2.26 9.49 -38.96 -0.37 -2.63 16 23 C 0.10 1.33 11.17 -17.62 -0.20 1.14 16 24 N -0.49 -6.77 10.34 -13.35 -0.14 -6.91 16 25 C 0.09 1.11 11.17 -17.61 -0.20 0.91 16 26 C -0.16 -1.94 9.90 -38.95 -0.39 -2.33 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 30 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.02 6.55 -51.93 -0.34 0.68 16 37 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 38 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 39 H 0.03 0.70 5.15 -51.93 -0.27 0.43 16 40 H 0.03 0.68 7.50 -51.93 -0.39 0.29 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.14 2.50 4.32 -52.49 -0.23 2.27 16 43 H 0.14 2.03 7.52 -52.49 -0.39 1.64 16 44 H 0.14 2.02 6.30 -52.48 -0.33 1.69 16 45 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -30.53 388.07 -9.17 -39.70 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.32 Total: 6.18 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.05 Total: -2.87 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -1.06 Total: -51.16 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.67 Total: 14.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.53 -9.17 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068239633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.573 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds