Wall clock time and date at job start Tue Mar 31 2020 11:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00052 * 2 1 4 4 H 1.08003 * 120.00132 * 196.13401 * 3 2 1 5 5 C 1.38808 * 119.99993 * 16.12597 * 3 2 1 6 6 N 1.31621 * 120.00154 * 11.00189 * 5 3 2 7 7 Si 1.86802 * 120.00229 * 190.99465 * 5 3 2 8 8 H 1.48501 * 109.47211 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47153 * 120.00513 * 7 5 3 10 10 H 1.48503 * 109.47455 * 240.00556 * 7 5 3 11 11 C 1.46499 * 120.00259 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47406 * 270.00566 * 11 2 1 13 13 O 1.21280 * 119.99663 * 359.97438 * 12 11 2 14 14 N 1.34773 * 119.99896 * 179.97438 * 12 11 2 15 15 C 1.46505 * 119.99922 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47341 * 180.02562 * 15 14 12 17 17 H 1.08995 * 110.87210 * 57.38898 * 16 15 14 18 18 C 1.55142 * 110.98644 * 293.54864 * 16 15 14 19 19 C 1.54327 * 103.01628 * 206.21546 * 18 16 15 20 20 N 1.47439 * 107.23107 * 22.28369 * 19 18 16 21 21 C 1.39677 * 111.00285 * 123.25774 * 20 19 18 22 22 C 1.38919 * 120.07033 * 34.64179 * 21 20 19 23 23 C 1.38105 * 119.92170 * 179.97438 * 22 21 20 24 24 C 1.38279 * 120.07638 * 0.02562 * 23 22 21 25 25 C 1.38294 * 120.15231 * 0.27372 * 24 23 22 26 26 C 1.38110 * 120.06919 * 359.45251 * 25 24 23 27 27 C 1.47850 * 108.57067 * 0.98978 * 20 19 18 28 28 H 1.09000 * 109.47334 * 275.22152 * 1 2 3 29 29 H 1.08999 * 109.46936 * 35.22477 * 1 2 3 30 30 H 1.08999 * 109.47108 * 155.22417 * 1 2 3 31 31 H 0.96995 * 120.00440 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47413 * 149.99814 * 11 2 1 33 33 H 1.09007 * 109.46753 * 30.00372 * 11 2 1 34 34 H 0.96997 * 120.00221 * 0.02562 * 14 12 11 35 35 H 1.09001 * 109.46737 * 59.99904 * 15 14 12 36 36 H 1.08998 * 109.47201 * 300.00382 * 15 14 12 37 37 H 1.08997 * 110.70900 * 87.83733 * 18 16 15 38 38 H 1.08993 * 110.85741 * 324.66427 * 18 16 15 39 39 H 1.08998 * 109.88950 * 262.88260 * 19 18 16 40 40 H 1.08999 * 109.88863 * 141.68925 * 19 18 16 41 41 H 1.07996 * 120.03305 * 359.96092 * 22 21 20 42 42 H 1.07998 * 119.95758 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.92611 * 180.02562 * 24 23 22 44 44 H 1.07995 * 119.96330 * 179.70132 * 25 24 23 45 45 H 1.08001 * 120.03354 * 180.27475 * 26 25 24 46 46 H 1.08996 * 110.37387 * 94.73045 * 27 20 19 47 47 H 1.08994 * 110.37467 * 217.07497 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1978 1.2043 -0.2599 5 6 1.4966 2.3644 0.3339 6 7 0.2893 2.3225 0.8566 7 14 2.3311 4.0099 0.0416 8 1 3.6738 3.7855 -0.5517 9 1 1.5087 4.8236 -0.8893 10 1 2.4742 4.7287 1.3332 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4216 13 8 2.0549 -1.0201 2.3431 14 7 3.1107 -2.8509 1.6682 15 6 3.3553 -3.2730 3.0497 16 6 4.1203 -4.5981 3.0502 17 1 5.0572 -4.5058 2.5010 18 6 3.2479 -5.7435 2.4725 19 6 3.8361 -7.0017 3.1453 20 7 4.5266 -6.5593 4.3706 21 6 4.0198 -7.2145 5.4952 22 6 3.5954 -8.5339 5.3998 23 6 3.0953 -9.1789 6.5138 24 6 3.0161 -8.5129 7.7230 25 6 3.4319 -7.1975 7.8201 26 6 3.9384 -6.5483 6.7113 27 6 4.3710 -5.0944 4.4960 28 1 -0.3634 0.0935 1.0234 29 1 -0.3633 0.8395 -0.5927 30 1 -0.3633 -0.9331 -0.4307 31 1 -0.1669 3.1459 1.0902 32 1 3.1499 -1.1386 -0.5133 33 1 1.6084 -2.0286 -0.5130 34 1 3.4260 -3.3970 0.9312 35 1 2.4030 -3.4025 3.5640 36 1 3.9449 -2.5133 3.5628 37 1 3.3545 -5.8003 1.3892 38 1 2.2019 -5.6120 2.7491 39 1 4.5460 -7.4840 2.4734 40 1 3.0345 -7.6945 3.4010 41 1 3.6564 -9.0543 4.4555 42 1 2.7656 -10.2048 6.4404 43 1 2.6250 -9.0199 8.5928 44 1 3.3643 -6.6788 8.7649 45 1 4.2671 -5.5224 6.7889 46 1 3.5184 -4.8564 5.1321 47 1 5.2811 -4.6490 4.8976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:35 Heat of formation + Delta-G solvation = 33.865091 kcal Electronic energy + Delta-G solvation = -25896.572783 eV Core-core repulsion = 22273.414314 eV Total energy + Delta-G solvation = -3623.158468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79734 -38.92189 -37.97758 -35.33393 -34.53908 -32.38625 -31.60372 -31.19888 -29.73812 -28.78000 -27.28552 -25.82676 -24.98410 -23.29962 -22.53385 -21.48275 -20.88673 -20.34494 -19.54149 -17.89527 -16.78795 -16.65998 -16.26242 -15.85700 -15.29518 -15.26126 -14.81630 -14.63654 -14.52366 -14.10048 -13.79613 -13.51813 -13.41747 -13.24223 -12.99732 -12.94455 -12.69659 -12.28162 -11.97484 -11.72002 -11.65714 -11.46274 -11.19499 -11.12207 -11.00997 -10.89953 -10.84188 -10.64046 -10.27194 -10.07103 -9.96013 -9.82861 -9.18796 -9.05211 -8.53262 -8.43840 -8.08655 -6.79677 -5.64766 -3.07395 1.13936 1.14337 3.30769 3.41426 3.47909 3.50696 3.59103 3.63657 3.75005 4.20884 4.36965 4.55165 4.55810 4.63721 4.70076 4.88417 4.92898 5.04014 5.13738 5.17140 5.26423 5.28855 5.43133 5.48352 5.48970 5.51488 5.60826 5.61230 5.72288 5.73274 5.81999 5.91124 5.99931 6.14150 6.15254 6.17210 6.30678 6.31103 6.48888 6.64429 6.77648 6.95654 7.00900 7.52001 7.76589 7.92773 8.11784 8.41832 9.13032 9.27964 9.89496 10.34156 11.39840 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.002188 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.908569 B =12792.608756 C =13060.600344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.576 5.576 3 C -0.251 4.251 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.133 3.867 12 C 0.468 3.532 13 O -0.512 6.512 14 N -0.749 5.749 15 C 0.131 3.869 16 C -0.107 4.107 17 H 0.092 0.908 18 C -0.136 4.136 19 C 0.037 3.963 20 N -0.478 5.478 21 C 0.114 3.886 22 C -0.161 4.161 23 C -0.093 4.093 24 C -0.155 4.155 25 C -0.091 4.091 26 C -0.164 4.164 27 C 0.046 3.954 28 H 0.029 0.971 29 H 0.058 0.942 30 H -0.007 1.007 31 H 0.251 0.749 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.391 0.609 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.067 0.933 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.288 -24.417 7.132 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.296 5.296 3 C -0.380 4.380 4 H 0.090 0.910 5 C -0.197 4.197 6 N -0.549 5.549 7 Si 0.739 3.261 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.000 4.000 12 C 0.252 3.748 13 O -0.384 6.384 14 N -0.406 5.406 15 C 0.006 3.994 16 C -0.127 4.127 17 H 0.111 0.889 18 C -0.174 4.174 19 C -0.089 4.089 20 N -0.191 5.191 21 C 0.015 3.985 22 C -0.182 4.182 23 C -0.111 4.111 24 C -0.174 4.174 25 C -0.109 4.109 26 C -0.185 4.185 27 C -0.080 4.080 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.011 0.989 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.224 0.776 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.085 0.915 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.377 -23.753 7.715 26.042 hybrid contribution 0.014 0.681 0.001 0.681 sum 7.391 -23.072 7.716 25.426 Atomic orbital electron populations 1.20931 0.81616 0.95495 0.99855 1.43947 1.02323 0.99803 1.83531 1.19251 0.94885 0.84035 1.39853 0.91034 1.24985 0.97159 0.98361 0.99148 1.70144 1.13523 1.25883 1.45317 0.86124 0.78617 0.84047 0.77356 1.20370 1.21616 1.21752 1.20973 0.97955 0.90296 0.90753 1.23709 0.76480 0.79050 0.95522 1.90693 1.48693 1.52481 1.46483 1.46530 1.61358 1.25816 1.06866 1.21066 0.99043 0.93625 0.85684 1.22558 0.99632 0.94504 0.95968 0.88925 1.22869 0.99873 0.93554 1.01154 1.23139 0.97336 0.97857 0.90554 1.60527 1.50914 1.05782 1.01864 1.19191 0.93887 0.93902 0.91507 1.20895 1.03654 0.94158 0.99461 1.20988 0.98108 0.99500 0.92548 1.21052 1.03264 0.95241 0.97863 1.21027 0.97138 0.94702 0.98059 1.21053 1.04438 1.00436 0.92549 1.23250 1.02299 0.85343 0.97108 0.95279 0.92307 0.98889 0.93859 0.90891 0.91508 0.77630 0.92207 0.91891 0.89960 0.90657 0.89782 0.91058 0.85756 0.86088 0.86310 0.85998 0.85585 0.91456 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.29 9.01 59.85 0.54 4.83 16 2 N -0.58 -15.02 2.42 -182.50 -0.44 -15.47 16 3 C -0.25 -7.14 9.74 -15.06 -0.15 -7.28 16 4 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 5 C 0.00 0.04 5.18 -17.43 -0.09 -0.05 16 6 N -0.90 -27.60 10.21 55.49 0.57 -27.03 16 7 Si 0.91 22.60 29.57 -169.99 -5.03 17.58 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 C 0.13 2.68 6.19 -5.19 -0.03 2.64 16 12 C 0.47 9.54 7.90 -10.99 -0.09 9.45 16 13 O -0.51 -13.47 16.43 5.56 0.09 -13.38 16 14 N -0.75 -10.75 5.41 -60.29 -0.33 -11.07 16 15 C 0.13 1.71 5.12 -4.04 -0.02 1.69 16 16 C -0.11 -1.00 3.10 -88.48 -0.27 -1.27 16 17 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.14 -1.13 6.11 -24.90 -0.15 -1.28 16 19 C 0.04 0.30 6.19 -2.83 -0.02 0.28 16 20 N -0.48 -4.59 5.27 -167.92 -0.89 -5.47 16 21 C 0.11 1.15 5.79 -83.78 -0.49 0.66 16 22 C -0.16 -1.46 8.60 -39.38 -0.34 -1.79 16 23 C -0.09 -0.76 10.04 -39.62 -0.40 -1.16 16 24 C -0.16 -1.28 10.04 -39.55 -0.40 -1.68 16 25 C -0.09 -0.80 10.04 -39.61 -0.40 -1.19 16 26 C -0.16 -1.60 8.66 -39.38 -0.34 -1.94 16 27 C 0.05 0.43 4.91 -2.30 -0.01 0.42 16 28 H 0.03 0.84 7.55 -51.93 -0.39 0.45 16 29 H 0.06 1.62 6.79 -51.93 -0.35 1.26 16 30 H -0.01 -0.16 7.83 -51.93 -0.41 -0.57 16 31 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 33 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 34 H 0.39 4.24 8.34 -40.82 -0.34 3.90 16 35 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.71 8.02 -51.93 -0.42 0.29 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.55 5.83 -51.93 -0.30 0.25 16 41 H 0.12 0.95 6.66 -52.49 -0.35 0.60 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.13 1.13 6.50 -52.49 -0.34 0.79 16 46 H 0.07 0.66 6.49 -51.93 -0.34 0.33 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -35.77 376.29 -10.41 -46.19 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.41 Total: 0.67 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -2.65 Total: 2.33 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -1.09 Total: -59.04 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.77 -10.41 -46.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.051 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds