Wall clock time and date at job start Tue Mar 31 2020 11:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 120.00052 * 2 1 4 4 H 1.08003 * 120.00132 * 196.13401 * 3 2 1 5 5 C 1.38808 * 119.99993 * 16.12597 * 3 2 1 6 6 N 1.31621 * 120.00154 * 11.00189 * 5 3 2 7 7 Si 1.86802 * 120.00229 * 190.99465 * 5 3 2 8 8 H 1.48501 * 109.47211 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47153 * 120.00513 * 7 5 3 10 10 H 1.48503 * 109.47455 * 240.00556 * 7 5 3 11 11 C 1.46499 * 120.00259 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47406 * 270.00566 * 11 2 1 13 13 O 1.21280 * 119.99663 * 359.97438 * 12 11 2 14 14 N 1.34773 * 119.99896 * 179.97438 * 12 11 2 15 15 C 1.46505 * 119.99922 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47341 * 180.02562 * 15 14 12 17 17 H 1.08995 * 110.87210 * 57.38898 * 16 15 14 18 18 C 1.55142 * 110.98644 * 293.54864 * 16 15 14 19 19 C 1.54327 * 103.01628 * 206.21546 * 18 16 15 20 20 N 1.47439 * 107.23107 * 22.28369 * 19 18 16 21 21 C 1.39677 * 111.00285 * 123.25774 * 20 19 18 22 22 C 1.38919 * 120.07033 * 34.64179 * 21 20 19 23 23 C 1.38105 * 119.92170 * 179.97438 * 22 21 20 24 24 C 1.38279 * 120.07638 * 0.02562 * 23 22 21 25 25 C 1.38294 * 120.15231 * 0.27372 * 24 23 22 26 26 C 1.38110 * 120.06919 * 359.45251 * 25 24 23 27 27 C 1.47850 * 108.57067 * 0.98978 * 20 19 18 28 28 H 1.09000 * 109.47334 * 275.22152 * 1 2 3 29 29 H 1.08999 * 109.46936 * 35.22477 * 1 2 3 30 30 H 1.08999 * 109.47108 * 155.22417 * 1 2 3 31 31 H 0.96995 * 120.00440 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47413 * 149.99814 * 11 2 1 33 33 H 1.09007 * 109.46753 * 30.00372 * 11 2 1 34 34 H 0.96997 * 120.00221 * 0.02562 * 14 12 11 35 35 H 1.09001 * 109.46737 * 59.99904 * 15 14 12 36 36 H 1.08998 * 109.47201 * 300.00382 * 15 14 12 37 37 H 1.08997 * 110.70900 * 87.83733 * 18 16 15 38 38 H 1.08993 * 110.85741 * 324.66427 * 18 16 15 39 39 H 1.08998 * 109.88950 * 262.88260 * 19 18 16 40 40 H 1.08999 * 109.88863 * 141.68925 * 19 18 16 41 41 H 1.07996 * 120.03305 * 359.96092 * 22 21 20 42 42 H 1.07998 * 119.95758 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.92611 * 180.02562 * 24 23 22 44 44 H 1.07995 * 119.96330 * 179.70132 * 25 24 23 45 45 H 1.08001 * 120.03354 * 180.27475 * 26 25 24 46 46 H 1.08996 * 110.37387 * 94.73045 * 27 20 19 47 47 H 1.08994 * 110.37467 * 217.07497 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1978 1.2043 -0.2599 5 6 1.4966 2.3644 0.3339 6 7 0.2893 2.3225 0.8566 7 14 2.3311 4.0099 0.0416 8 1 3.6738 3.7855 -0.5517 9 1 1.5087 4.8236 -0.8893 10 1 2.4742 4.7287 1.3332 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4216 13 8 2.0549 -1.0201 2.3431 14 7 3.1107 -2.8509 1.6682 15 6 3.3553 -3.2730 3.0497 16 6 4.1203 -4.5981 3.0502 17 1 5.0572 -4.5058 2.5010 18 6 3.2479 -5.7435 2.4725 19 6 3.8361 -7.0017 3.1453 20 7 4.5266 -6.5593 4.3706 21 6 4.0198 -7.2145 5.4952 22 6 3.5954 -8.5339 5.3998 23 6 3.0953 -9.1789 6.5138 24 6 3.0161 -8.5129 7.7230 25 6 3.4319 -7.1975 7.8201 26 6 3.9384 -6.5483 6.7113 27 6 4.3710 -5.0944 4.4960 28 1 -0.3634 0.0935 1.0234 29 1 -0.3633 0.8395 -0.5927 30 1 -0.3633 -0.9331 -0.4307 31 1 -0.1669 3.1459 1.0902 32 1 3.1499 -1.1386 -0.5133 33 1 1.6084 -2.0286 -0.5130 34 1 3.4260 -3.3970 0.9312 35 1 2.4030 -3.4025 3.5640 36 1 3.9449 -2.5133 3.5628 37 1 3.3545 -5.8003 1.3892 38 1 2.2019 -5.6120 2.7491 39 1 4.5460 -7.4840 2.4734 40 1 3.0345 -7.6945 3.4010 41 1 3.6564 -9.0543 4.4555 42 1 2.7656 -10.2048 6.4404 43 1 2.6250 -9.0199 8.5928 44 1 3.3643 -6.6788 8.7649 45 1 4.2671 -5.5224 6.7889 46 1 3.5184 -4.8564 5.1321 47 1 5.2811 -4.6490 4.8976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:34 Heat of formation + Delta-G solvation = 9.762747 kcal Electronic energy + Delta-G solvation = -25897.617939 eV Core-core repulsion = 22273.414314 eV Total energy + Delta-G solvation = -3624.203624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51656 -40.40550 -38.81841 -37.12925 -35.90890 -33.51731 -33.12554 -32.25869 -30.63541 -29.55886 -28.79032 -27.91209 -26.17385 -23.98022 -23.60735 -23.05269 -21.71500 -21.17429 -20.94828 -18.86013 -18.61093 -17.72130 -17.53658 -17.01096 -16.58296 -16.20777 -16.10337 -15.94522 -15.34347 -15.30103 -15.09480 -14.77413 -14.67650 -14.39893 -14.15282 -13.97877 -13.76327 -13.61027 -13.28636 -13.04090 -12.84125 -12.70291 -12.54908 -12.35664 -12.25642 -12.17321 -11.99141 -11.88395 -11.83911 -11.78266 -11.64350 -10.90345 -10.74437 -10.51763 -9.93057 -9.84826 -8.87236 -8.77115 -7.80180 -5.25179 0.47373 0.47929 1.45025 1.46712 1.57083 1.97440 2.32792 2.53134 2.67050 3.04066 3.35772 3.48152 3.57817 3.72364 3.76718 3.99014 4.08304 4.21649 4.23930 4.29480 4.33320 4.36765 4.53408 4.57552 4.59305 4.63406 4.63729 4.73656 4.75530 4.81930 4.84345 4.88324 4.96337 5.02845 5.10781 5.22795 5.29690 5.39073 5.51870 5.58748 5.64278 5.66523 5.78991 5.84532 5.96201 6.28431 6.32377 6.81123 7.14328 7.60104 7.87293 8.25291 9.23872 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.002188 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.908569 B =12792.608756 C =13060.600344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.080 0.920 5 C -0.065 4.065 6 N -0.942 5.942 7 Si 0.974 3.026 8 H -0.260 1.260 9 H -0.287 1.287 10 H -0.301 1.301 11 C 0.127 3.873 12 C 0.471 3.529 13 O -0.581 6.581 14 N -0.720 5.720 15 C 0.135 3.865 16 C -0.093 4.093 17 H 0.108 0.892 18 C -0.132 4.132 19 C 0.037 3.963 20 N -0.483 5.483 21 C 0.096 3.904 22 C -0.169 4.169 23 C -0.098 4.098 24 C -0.162 4.162 25 C -0.102 4.102 26 C -0.183 4.183 27 C 0.047 3.953 28 H -0.015 1.015 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.244 0.756 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.414 0.586 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.125 0.875 46 H 0.056 0.944 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.924 -26.900 5.903 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.098 0.902 5 C -0.258 4.258 6 N -0.590 5.590 7 Si 0.802 3.198 8 H -0.184 1.184 9 H -0.213 1.213 10 H -0.228 1.228 11 C -0.004 4.004 12 C 0.256 3.744 13 O -0.458 6.458 14 N -0.377 5.377 15 C 0.010 3.990 16 C -0.113 4.113 17 H 0.126 0.874 18 C -0.170 4.170 19 C -0.088 4.088 20 N -0.196 5.196 21 C -0.003 4.003 22 C -0.190 4.190 23 C -0.116 4.116 24 C -0.180 4.180 25 C -0.120 4.120 26 C -0.204 4.204 27 C -0.079 4.079 28 H 0.004 0.996 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.251 0.749 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.155 0.845 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.142 0.858 46 H 0.074 0.926 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.081 -26.341 6.445 28.598 hybrid contribution -0.447 1.251 0.425 1.395 sum 8.634 -25.090 6.870 27.409 Atomic orbital electron populations 1.20604 0.82299 0.96441 0.97043 1.44121 1.02425 1.01305 1.83949 1.19662 0.95220 0.85271 1.38287 0.90187 1.25851 0.98040 1.02036 0.99908 1.70356 1.15178 1.26090 1.47338 0.85093 0.78423 0.79640 0.76622 1.18395 1.21336 1.22839 1.21267 0.99323 0.88966 0.90804 1.23437 0.76270 0.79831 0.94819 1.90689 1.51903 1.55058 1.48200 1.46060 1.59051 1.24074 1.08476 1.21051 0.98512 0.95227 0.84187 1.22414 0.99815 0.92576 0.96446 0.87397 1.22864 0.98761 0.92980 1.02413 1.23208 0.97743 0.97726 0.90123 1.60593 1.51277 1.05413 1.02327 1.19392 0.94618 0.94571 0.91696 1.21131 1.03545 0.93910 1.00420 1.21328 0.97457 1.00578 0.92239 1.21373 1.02801 0.95105 0.98767 1.21292 0.97015 0.95293 0.98439 1.21211 1.05263 1.00714 0.93163 1.23198 1.02019 0.85815 0.96875 0.99646 0.94804 0.94791 0.94648 0.88305 0.87504 0.74890 0.93934 0.93528 0.87803 0.91987 0.88286 0.90773 0.84470 0.83822 0.84355 0.84682 0.85752 0.92566 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.52 9.01 127.77 1.15 10.67 16 2 N -0.60 -30.84 2.42 -731.32 -1.77 -32.61 16 3 C -0.25 -14.43 9.74 84.03 0.82 -13.61 16 4 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 5 C -0.06 -3.82 5.18 84.86 0.44 -3.38 16 6 N -0.94 -59.64 10.21 21.65 0.22 -59.42 16 7 Si 0.97 47.15 29.57 68.60 2.03 49.18 16 8 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 9 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 10 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 11 C 0.13 4.79 6.19 85.63 0.53 5.32 16 12 C 0.47 18.66 7.90 87.66 0.69 19.36 16 13 O -0.58 -31.22 16.43 -3.03 -0.05 -31.27 16 14 N -0.72 -19.16 5.41 -463.05 -2.50 -21.66 16 15 C 0.14 3.43 5.12 86.38 0.44 3.87 16 16 C -0.09 -1.56 3.10 -9.41 -0.03 -1.59 16 17 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 18 C -0.13 -1.84 6.11 31.78 0.19 -1.65 16 19 C 0.04 0.51 6.19 86.65 0.54 1.04 16 20 N -0.48 -8.58 5.27 -685.17 -3.61 -12.19 16 21 C 0.10 1.85 5.79 38.21 0.22 2.07 16 22 C -0.17 -2.80 8.60 22.40 0.19 -2.61 16 23 C -0.10 -1.43 10.04 22.25 0.22 -1.20 16 24 C -0.16 -2.44 10.04 22.29 0.22 -2.21 16 25 C -0.10 -1.73 10.04 22.25 0.22 -1.51 16 26 C -0.18 -3.55 8.66 22.40 0.19 -3.35 16 27 C 0.05 0.85 4.91 86.77 0.43 1.28 16 28 H -0.01 -0.91 7.55 -2.39 -0.02 -0.93 16 29 H 0.03 1.90 6.79 -2.39 -0.02 1.88 16 30 H 0.03 1.46 7.83 -2.39 -0.02 1.44 16 31 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.10 3.23 8.02 -2.39 -0.02 3.21 16 33 H 0.11 3.17 7.86 -2.38 -0.02 3.15 16 34 H 0.41 7.38 8.34 -92.71 -0.77 6.60 16 35 H 0.04 1.25 8.11 -2.39 -0.02 1.23 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.06 8.02 -2.39 -0.02 1.04 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 0.99 5.83 -2.39 -0.01 0.97 16 41 H 0.14 1.80 6.66 -2.91 -0.02 1.78 16 42 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.12 2.31 6.50 -2.91 -0.02 2.29 16 46 H 0.06 1.13 6.49 -2.39 -0.02 1.12 16 47 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -81.14 376.29 0.98 -80.16 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.19 Total: 15.32 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.48 Total: 12.50 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -7.67 Total: -125.89 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -81.14 0.98 -80.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.921 kcal (2) G-P(sol) polarization free energy of solvation -81.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds