Wall clock time and date at job start Tue Mar 31 2020 11:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00193 * 2 1 4 4 H 1.08002 * 119.99931 * 159.17731 * 3 2 1 5 5 C 1.38812 * 119.99920 * 338.90507 * 3 2 1 6 6 N 1.31614 * 120.00128 * 348.46935 * 5 3 2 7 7 Si 1.86797 * 119.99737 * 168.47428 * 5 3 2 8 8 H 1.48495 * 109.47353 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47354 * 119.99915 * 7 5 3 10 10 H 1.48499 * 109.47117 * 239.99602 * 7 5 3 11 11 C 1.46501 * 119.99576 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.47030 * 269.99723 * 11 2 1 13 13 O 1.21279 * 119.99922 * 0.02562 * 12 11 2 14 14 N 1.34777 * 119.99998 * 180.02562 * 12 11 2 15 15 C 1.46501 * 119.99789 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.47190 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.28417 * 305.70410 * 16 15 14 18 18 C 1.54260 * 110.32088 * 67.82450 * 16 15 14 19 19 C 1.54382 * 105.05717 * 118.89819 * 18 16 15 20 20 N 1.48560 * 104.59154 * 23.85422 * 19 18 16 21 21 C 1.39676 * 110.99442 * 200.95821 * 20 19 18 22 22 C 1.38915 * 120.07280 * 119.84865 * 21 20 19 23 23 C 1.38105 * 119.92267 * 179.76273 * 22 21 20 24 24 C 1.38290 * 120.07479 * 0.51633 * 23 22 21 25 25 C 1.38284 * 120.14740 * 359.73732 * 24 23 22 26 26 C 1.38094 * 120.07960 * 0.02562 * 25 24 23 27 27 C 1.48721 * 104.29151 * 320.56994 * 20 19 18 28 28 H 1.08997 * 109.47531 * 84.89376 * 1 2 3 29 29 H 1.08997 * 109.47099 * 204.90480 * 1 2 3 30 30 H 1.09004 * 109.46766 * 324.89889 * 1 2 3 31 31 H 0.97004 * 120.00357 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.47146 * 29.99826 * 11 2 1 33 33 H 1.08995 * 109.47112 * 149.99962 * 11 2 1 34 34 H 0.96992 * 120.00289 * 359.97438 * 14 12 11 35 35 H 1.09002 * 109.47327 * 299.99616 * 15 14 12 36 36 H 1.09000 * 109.47541 * 59.99845 * 15 14 12 37 37 H 1.09002 * 110.32201 * 237.79536 * 18 16 15 38 38 H 1.08998 * 110.32465 * 359.90005 * 18 16 15 39 39 H 1.09004 * 110.40737 * 142.62734 * 19 18 16 40 40 H 1.08996 * 110.41299 * 265.07597 * 19 18 16 41 41 H 1.07993 * 120.03711 * 0.02562 * 22 21 20 42 42 H 1.08005 * 119.96255 * 180.25220 * 23 22 21 43 43 H 1.07996 * 119.92212 * 179.76465 * 24 23 22 44 44 H 1.08008 * 119.95890 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.04494 * 179.97438 * 26 25 24 46 46 H 1.09000 * 110.38531 * 280.64455 * 27 20 19 47 47 H 1.08998 * 110.51097 * 158.14858 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1769 1.2164 0.3325 5 6 1.5255 2.3477 -0.4327 6 7 0.3658 2.2805 -1.0513 7 14 2.3315 4.0067 -0.1369 8 1 3.6206 3.8111 0.5738 9 1 2.5803 4.6754 -1.4393 10 1 1.4341 4.8526 0.6902 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7044 1.4200 13 8 2.0543 -1.0225 2.3421 14 7 3.1116 -2.8519 1.6658 15 6 3.3552 -3.2756 3.0469 16 6 4.1203 -4.6007 3.0464 17 1 3.5904 -5.3427 2.4491 18 6 5.5484 -4.3945 2.5010 19 6 6.4831 -4.7963 3.6623 20 7 5.6683 -5.7159 4.4974 21 6 6.1756 -5.7940 5.7965 22 6 5.3857 -5.4191 6.8760 23 6 5.8888 -5.5023 8.1594 24 6 7.1808 -5.9480 8.3699 25 6 7.9716 -6.3170 7.2971 26 6 7.4732 -6.2409 6.0114 27 6 4.3096 -5.1110 4.4910 28 1 -0.3634 0.0915 -1.0235 29 1 -0.3633 -0.9321 0.4327 30 1 -0.3633 0.8408 0.5910 31 1 -0.0707 3.0924 -1.3534 32 1 1.6083 -2.0282 -0.5147 33 1 3.1498 -1.1383 -0.5143 34 1 3.4266 -3.3975 0.9284 35 1 3.9438 -2.5161 3.5616 36 1 2.4026 -3.4067 3.5602 37 1 5.7202 -5.0367 1.6372 38 1 5.7038 -3.3497 2.2321 39 1 7.3648 -5.3106 3.2800 40 1 6.7740 -3.9174 4.2376 41 1 4.3780 -5.0671 6.7120 42 1 5.2738 -5.2148 8.9995 43 1 7.5730 -6.0084 9.3743 44 1 8.9802 -6.6650 7.4649 45 1 8.0914 -6.5289 5.1739 46 1 4.2598 -4.2819 5.1967 47 1 3.5564 -5.8615 4.7309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:39 Heat of formation + Delta-G solvation = 31.798177 kcal Electronic energy + Delta-G solvation = -25815.281949 eV Core-core repulsion = 22192.033852 eV Total energy + Delta-G solvation = -3623.248097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.72457 -39.04336 -38.05107 -35.35043 -34.60852 -32.48000 -31.48950 -31.22264 -29.82353 -28.71373 -27.34324 -25.81244 -24.98715 -23.19638 -22.85593 -21.58124 -20.96586 -20.15676 -19.58275 -17.86582 -16.90182 -16.53568 -16.26071 -15.97721 -15.60357 -15.24735 -14.73463 -14.67780 -14.57230 -14.27653 -13.69885 -13.64398 -13.29511 -13.25027 -13.02544 -12.72988 -12.55307 -12.40391 -12.30817 -11.73670 -11.69137 -11.51670 -11.26008 -11.23430 -11.02921 -10.82567 -10.75899 -10.66089 -10.34149 -9.99954 -9.94011 -9.85940 -9.24146 -9.18022 -8.63899 -8.48275 -8.24853 -6.76426 -5.69009 -3.13527 1.06118 1.10316 3.31445 3.40977 3.45838 3.48718 3.51245 3.54235 3.73711 4.24945 4.34043 4.55078 4.58519 4.63109 4.66354 4.82924 4.90331 5.01462 5.13296 5.15911 5.21507 5.28563 5.40011 5.44285 5.47198 5.51983 5.55167 5.59705 5.67305 5.72134 5.78196 5.88596 5.99278 6.09731 6.10417 6.17771 6.25853 6.31545 6.43669 6.54352 6.81218 6.86483 6.97576 7.48572 7.74541 7.86563 8.01780 8.40264 8.99832 9.25750 9.87041 10.33452 11.36392 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.002208 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.513847 B =12678.778058 C =13052.727024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.577 5.577 3 C -0.246 4.246 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.909 5.909 7 Si 0.908 3.092 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.136 3.864 12 C 0.474 3.526 13 O -0.524 6.524 14 N -0.746 5.746 15 C 0.128 3.872 16 C -0.103 4.103 17 H 0.089 0.911 18 C -0.124 4.124 19 C 0.040 3.960 20 N -0.468 5.468 21 C 0.101 3.899 22 C -0.168 4.168 23 C -0.096 4.096 24 C -0.147 4.147 25 C -0.099 4.099 26 C -0.136 4.136 27 C 0.035 3.965 28 H 0.033 0.967 29 H -0.005 1.005 30 H 0.046 0.954 31 H 0.252 0.748 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.394 0.606 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.064 0.936 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.291 -20.792 12.470 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.297 5.297 3 C -0.375 4.375 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.555 5.555 7 Si 0.738 3.262 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.003 3.997 12 C 0.258 3.742 13 O -0.397 6.397 14 N -0.402 5.402 15 C 0.003 3.997 16 C -0.122 4.122 17 H 0.107 0.893 18 C -0.162 4.162 19 C -0.086 4.086 20 N -0.183 5.183 21 C 0.003 3.997 22 C -0.189 4.189 23 C -0.114 4.114 24 C -0.166 4.166 25 C -0.118 4.118 26 C -0.156 4.156 27 C -0.092 4.092 28 H 0.051 0.949 29 H 0.013 0.987 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.083 0.917 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.824 -20.599 12.777 27.423 hybrid contribution 0.531 1.234 0.379 1.396 sum 13.355 -19.365 13.156 26.953 Atomic orbital electron populations 1.20827 0.81903 0.95778 0.99230 1.43600 1.02113 0.99825 1.84177 1.19183 0.96836 0.85287 1.36224 0.91549 1.24955 0.97558 0.98443 0.98766 1.70091 1.17195 1.26770 1.41435 0.86125 0.78664 0.84070 0.77321 1.20375 1.21734 1.21588 1.20662 0.98333 0.90482 0.90247 1.23524 0.76199 0.79070 0.95360 1.90636 1.49358 1.53001 1.46698 1.46379 1.60997 1.25716 1.07153 1.21233 0.99283 0.93867 0.85331 1.22149 0.96484 0.97392 0.96194 0.89257 1.22462 0.93335 1.02626 0.97744 1.23195 0.96871 0.94343 0.94142 1.62537 1.03400 1.44016 1.08340 1.19138 0.93872 0.97295 0.89357 1.21412 1.01361 1.03379 0.92724 1.21049 0.95633 0.98176 0.96566 1.21098 0.94623 1.01907 0.98938 1.21028 0.99629 0.98816 0.92302 1.20800 0.94630 1.02751 0.97454 1.23330 0.90456 0.98654 0.96739 0.94876 0.98686 0.93508 0.93803 0.91438 0.90435 0.77282 0.92126 0.92005 0.90420 0.90028 0.89573 0.92783 0.85288 0.86013 0.86230 0.85959 0.85874 0.91743 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.35 8.96 59.85 0.54 4.88 16 2 N -0.58 -15.11 2.42 -182.50 -0.44 -15.55 16 3 C -0.25 -7.04 9.68 -15.06 -0.15 -7.18 16 4 H 0.07 1.89 7.86 -52.49 -0.41 1.47 16 5 C 0.00 0.01 5.14 -17.43 -0.09 -0.08 16 6 N -0.91 -27.10 10.52 55.49 0.58 -26.51 16 7 Si 0.91 22.70 29.57 -169.99 -5.03 17.67 16 8 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 C 0.14 2.72 6.12 -5.19 -0.03 2.69 16 12 C 0.47 9.20 7.90 -10.99 -0.09 9.11 16 13 O -0.52 -12.86 16.43 5.56 0.09 -12.77 16 14 N -0.75 -10.17 5.37 -60.29 -0.32 -10.49 16 15 C 0.13 1.56 4.74 -4.04 -0.02 1.54 16 16 C -0.10 -0.91 3.10 -89.24 -0.28 -1.19 16 17 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 18 C -0.12 -1.02 6.39 -25.35 -0.16 -1.18 16 19 C 0.04 0.34 5.92 -2.18 -0.01 0.32 16 20 N -0.47 -4.40 5.43 -166.57 -0.90 -5.31 16 21 C 0.10 0.99 5.48 -83.78 -0.46 0.53 16 22 C -0.17 -1.58 8.82 -39.38 -0.35 -1.93 16 23 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 24 C -0.15 -1.16 10.04 -39.55 -0.40 -1.56 16 25 C -0.10 -0.79 10.04 -39.62 -0.40 -1.18 16 26 C -0.14 -1.21 9.37 -39.38 -0.37 -1.58 16 27 C 0.04 0.32 4.82 -2.09 -0.01 0.31 16 28 H 0.03 0.89 7.40 -51.93 -0.38 0.51 16 29 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 30 H 0.05 1.34 7.17 -51.93 -0.37 0.96 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 33 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 34 H 0.39 4.09 8.36 -40.82 -0.34 3.75 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.75 7.67 -51.93 -0.40 0.35 16 39 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 40 H 0.05 0.50 7.97 -51.93 -0.41 0.08 16 41 H 0.13 1.10 5.79 -52.49 -0.30 0.80 16 42 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.95 7.89 -52.48 -0.41 0.54 16 46 H 0.06 0.59 6.01 -51.93 -0.31 0.28 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -34.92 379.10 -10.51 -45.43 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.54 Total: -0.49 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -2.67 Total: 2.30 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -1.09 Total: -57.86 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.92 -10.51 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.229 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds