Wall clock time and date at job start Tue Mar 31 2020 11:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00193 * 2 1 4 4 H 1.08002 * 119.99931 * 159.17731 * 3 2 1 5 5 C 1.38812 * 119.99920 * 338.90507 * 3 2 1 6 6 N 1.31614 * 120.00128 * 348.46935 * 5 3 2 7 7 Si 1.86797 * 119.99737 * 168.47428 * 5 3 2 8 8 H 1.48495 * 109.47353 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47354 * 119.99915 * 7 5 3 10 10 H 1.48499 * 109.47117 * 239.99602 * 7 5 3 11 11 C 1.46501 * 119.99576 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.47030 * 269.99723 * 11 2 1 13 13 O 1.21279 * 119.99922 * 0.02562 * 12 11 2 14 14 N 1.34777 * 119.99998 * 180.02562 * 12 11 2 15 15 C 1.46501 * 119.99789 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.47190 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.28417 * 305.70410 * 16 15 14 18 18 C 1.54260 * 110.32088 * 67.82450 * 16 15 14 19 19 C 1.54382 * 105.05717 * 118.89819 * 18 16 15 20 20 N 1.48560 * 104.59154 * 23.85422 * 19 18 16 21 21 C 1.39676 * 110.99442 * 200.95821 * 20 19 18 22 22 C 1.38915 * 120.07280 * 119.84865 * 21 20 19 23 23 C 1.38105 * 119.92267 * 179.76273 * 22 21 20 24 24 C 1.38290 * 120.07479 * 0.51633 * 23 22 21 25 25 C 1.38284 * 120.14740 * 359.73732 * 24 23 22 26 26 C 1.38094 * 120.07960 * 0.02562 * 25 24 23 27 27 C 1.48721 * 104.29151 * 320.56994 * 20 19 18 28 28 H 1.08997 * 109.47531 * 84.89376 * 1 2 3 29 29 H 1.08997 * 109.47099 * 204.90480 * 1 2 3 30 30 H 1.09004 * 109.46766 * 324.89889 * 1 2 3 31 31 H 0.97004 * 120.00357 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.47146 * 29.99826 * 11 2 1 33 33 H 1.08995 * 109.47112 * 149.99962 * 11 2 1 34 34 H 0.96992 * 120.00289 * 359.97438 * 14 12 11 35 35 H 1.09002 * 109.47327 * 299.99616 * 15 14 12 36 36 H 1.09000 * 109.47541 * 59.99845 * 15 14 12 37 37 H 1.09002 * 110.32201 * 237.79536 * 18 16 15 38 38 H 1.08998 * 110.32465 * 359.90005 * 18 16 15 39 39 H 1.09004 * 110.40737 * 142.62734 * 19 18 16 40 40 H 1.08996 * 110.41299 * 265.07597 * 19 18 16 41 41 H 1.07993 * 120.03711 * 0.02562 * 22 21 20 42 42 H 1.08005 * 119.96255 * 180.25220 * 23 22 21 43 43 H 1.07996 * 119.92212 * 179.76465 * 24 23 22 44 44 H 1.08008 * 119.95890 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.04494 * 179.97438 * 26 25 24 46 46 H 1.09000 * 110.38531 * 280.64455 * 27 20 19 47 47 H 1.08998 * 110.51097 * 158.14858 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1769 1.2164 0.3325 5 6 1.5255 2.3477 -0.4327 6 7 0.3658 2.2805 -1.0513 7 14 2.3315 4.0067 -0.1369 8 1 3.6206 3.8111 0.5738 9 1 2.5803 4.6754 -1.4393 10 1 1.4341 4.8526 0.6902 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7044 1.4200 13 8 2.0543 -1.0225 2.3421 14 7 3.1116 -2.8519 1.6658 15 6 3.3552 -3.2756 3.0469 16 6 4.1203 -4.6007 3.0464 17 1 3.5904 -5.3427 2.4491 18 6 5.5484 -4.3945 2.5010 19 6 6.4831 -4.7963 3.6623 20 7 5.6683 -5.7159 4.4974 21 6 6.1756 -5.7940 5.7965 22 6 5.3857 -5.4191 6.8760 23 6 5.8888 -5.5023 8.1594 24 6 7.1808 -5.9480 8.3699 25 6 7.9716 -6.3170 7.2971 26 6 7.4732 -6.2409 6.0114 27 6 4.3096 -5.1110 4.4910 28 1 -0.3634 0.0915 -1.0235 29 1 -0.3633 -0.9321 0.4327 30 1 -0.3633 0.8408 0.5910 31 1 -0.0707 3.0924 -1.3534 32 1 1.6083 -2.0282 -0.5147 33 1 3.1498 -1.1383 -0.5143 34 1 3.4266 -3.3975 0.9284 35 1 3.9438 -2.5161 3.5616 36 1 2.4026 -3.4067 3.5602 37 1 5.7202 -5.0367 1.6372 38 1 5.7038 -3.3497 2.2321 39 1 7.3648 -5.3106 3.2800 40 1 6.7740 -3.9174 4.2376 41 1 4.3780 -5.0671 6.7120 42 1 5.2738 -5.2148 8.9995 43 1 7.5730 -6.0084 9.3743 44 1 8.9802 -6.6650 7.4649 45 1 8.0914 -6.5289 5.1739 46 1 4.2598 -4.2819 5.1967 47 1 3.5564 -5.8615 4.7309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:38 Heat of formation + Delta-G solvation = 8.969558 kcal Electronic energy + Delta-G solvation = -25816.271872 eV Core-core repulsion = 22192.033852 eV Total energy + Delta-G solvation = -3624.238020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43739 -40.44326 -38.87376 -37.13241 -35.92258 -33.54919 -33.16662 -32.11924 -30.71612 -29.46971 -28.83752 -27.90693 -26.14101 -23.90720 -23.70844 -23.26095 -21.74246 -21.21682 -20.74181 -18.87411 -18.53838 -17.74300 -17.47120 -17.00909 -16.65109 -16.42627 -16.23660 -15.89058 -15.33620 -15.27640 -15.07101 -14.84481 -14.75398 -14.29456 -14.26953 -13.79042 -13.65856 -13.46149 -13.16794 -13.07674 -13.05230 -12.81786 -12.60344 -12.39827 -12.27922 -12.18160 -12.02338 -11.94825 -11.88032 -11.87866 -11.48358 -10.95402 -10.66981 -10.54900 -9.95598 -9.87758 -8.92363 -8.82884 -7.84835 -5.31408 0.41619 0.46654 1.42862 1.45945 1.55815 1.90768 2.28577 2.52472 2.70121 3.00234 3.31030 3.53863 3.58397 3.70539 3.81040 3.99940 4.05947 4.19771 4.25242 4.28482 4.32496 4.37590 4.53295 4.54540 4.57049 4.62148 4.67353 4.69409 4.72897 4.81224 4.84589 4.85405 4.97687 5.05741 5.13837 5.17210 5.34262 5.35013 5.49027 5.58019 5.61701 5.63865 5.69079 5.80189 5.88374 6.27333 6.30890 6.76254 7.11952 7.53097 7.83244 8.23561 9.19169 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.002208 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.513847 B =12678.778058 C =13052.727024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.600 5.600 3 C -0.253 4.253 4 H 0.063 0.937 5 C -0.056 4.056 6 N -0.937 5.937 7 Si 0.969 3.031 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.294 1.294 11 C 0.130 3.870 12 C 0.479 3.521 13 O -0.582 6.582 14 N -0.719 5.719 15 C 0.132 3.868 16 C -0.089 4.089 17 H 0.106 0.894 18 C -0.120 4.120 19 C 0.040 3.960 20 N -0.470 5.470 21 C 0.083 3.917 22 C -0.185 4.185 23 C -0.106 4.106 24 C -0.152 4.152 25 C -0.103 4.103 26 C -0.147 4.147 27 C 0.036 3.964 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.009 0.991 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.415 0.585 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.041 0.959 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.132 0.868 46 H 0.056 0.944 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.096 -22.645 12.619 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.320 5.320 3 C -0.383 4.383 4 H 0.081 0.919 5 C -0.250 4.250 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.196 1.196 9 H -0.209 1.209 10 H -0.221 1.221 11 C -0.001 4.001 12 C 0.265 3.735 13 O -0.460 6.460 14 N -0.375 5.375 15 C 0.007 3.993 16 C -0.109 4.109 17 H 0.124 0.876 18 C -0.157 4.157 19 C -0.085 4.085 20 N -0.186 5.186 21 C -0.015 4.015 22 C -0.205 4.205 23 C -0.125 4.125 24 C -0.171 4.171 25 C -0.122 4.122 26 C -0.167 4.167 27 C -0.091 4.091 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.028 0.972 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.252 0.748 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.060 0.940 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.074 0.926 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.690 -22.544 12.913 29.846 hybrid contribution 0.040 1.669 0.414 1.720 sum 14.730 -20.875 13.327 28.816 Atomic orbital electron populations 1.20518 0.82522 0.95382 0.97722 1.43782 1.02216 1.01286 1.84761 1.19414 0.96836 0.86746 1.35351 0.91926 1.25723 0.98408 1.01670 0.99203 1.70226 1.18405 1.27224 1.42577 0.85173 0.77811 0.80013 0.77245 1.19636 1.20938 1.22139 1.20960 0.99164 0.88945 0.90992 1.23067 0.76249 0.79964 0.94256 1.90627 1.52205 1.55223 1.47979 1.45985 1.58708 1.23971 1.08797 1.21255 0.99093 0.95162 0.83758 1.22037 0.96622 0.95532 0.96676 0.87580 1.22452 0.92547 1.02489 0.98261 1.23219 0.97376 0.93977 0.93947 1.62593 1.03458 1.44070 1.08444 1.19328 0.94513 0.98077 0.89546 1.21570 1.01649 1.04028 0.93301 1.21324 0.96307 0.98124 0.96725 1.21423 0.94399 1.01189 1.00078 1.21354 1.00673 0.98204 0.91934 1.21015 0.94499 1.02838 0.98331 1.23313 0.90787 0.98608 0.96430 0.96348 0.96163 0.97250 0.94175 0.88108 0.88670 0.74823 0.93894 0.92891 0.88492 0.90940 0.88283 0.94043 0.85225 0.84605 0.84185 0.83750 0.84998 0.92577 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.66 8.96 127.77 1.15 10.80 16 2 N -0.60 -31.29 2.42 -731.31 -1.77 -33.06 16 3 C -0.25 -14.57 9.68 84.03 0.81 -13.76 16 4 H 0.06 3.56 7.86 -2.91 -0.02 3.54 16 5 C -0.06 -3.24 5.14 84.86 0.44 -2.80 16 6 N -0.94 -56.87 10.52 21.65 0.23 -56.64 16 7 Si 0.97 47.15 29.57 68.60 2.03 49.18 16 8 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 11 C 0.13 4.99 6.12 85.63 0.52 5.52 16 12 C 0.48 18.04 7.90 87.66 0.69 18.73 16 13 O -0.58 -28.75 16.43 -3.03 -0.05 -28.80 16 14 N -0.72 -18.11 5.37 -463.05 -2.48 -20.60 16 15 C 0.13 3.07 4.74 86.38 0.41 3.48 16 16 C -0.09 -1.40 3.10 -9.90 -0.03 -1.43 16 17 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 18 C -0.12 -1.69 6.39 31.49 0.20 -1.49 16 19 C 0.04 0.62 5.92 86.45 0.51 1.13 16 20 N -0.47 -8.22 5.43 -680.91 -3.70 -11.92 16 21 C 0.08 1.55 5.48 38.22 0.21 1.76 16 22 C -0.19 -3.40 8.82 22.40 0.20 -3.20 16 23 C -0.11 -1.70 10.04 22.25 0.22 -1.48 16 24 C -0.15 -2.16 10.04 22.29 0.22 -1.94 16 25 C -0.10 -1.46 10.04 22.25 0.22 -1.23 16 26 C -0.15 -2.42 9.37 22.40 0.21 -2.21 16 27 C 0.04 0.60 4.82 86.42 0.42 1.02 16 28 H 0.02 1.00 7.40 -2.39 -0.02 0.99 16 29 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 30 H 0.01 0.52 7.17 -2.39 -0.02 0.50 16 31 H 0.25 14.58 8.31 -92.70 -0.77 13.80 16 32 H 0.10 3.19 8.07 -2.39 -0.02 3.17 16 33 H 0.10 3.31 8.04 -2.39 -0.02 3.29 16 34 H 0.41 7.21 8.36 -92.71 -0.78 6.44 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.18 7.67 -2.39 -0.02 1.17 16 39 H 0.10 1.26 8.03 -2.38 -0.02 1.25 16 40 H 0.04 0.74 7.97 -2.39 -0.02 0.72 16 41 H 0.13 2.23 5.79 -2.91 -0.02 2.21 16 42 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.13 1.83 7.89 -2.91 -0.02 1.81 16 46 H 0.06 1.03 6.01 -2.39 -0.01 1.01 16 47 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -76.77 379.10 0.84 -75.92 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.18 Total: 13.00 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.41 Total: 12.90 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -7.72 Total: -122.21 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -76.77 0.84 -75.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.890 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds