Wall clock time and date at job start Tue Mar 31 2020 11:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99901 * 2 1 4 4 C 1.50693 * 109.47265 * 270.00398 * 3 2 1 5 5 H 1.07993 * 120.00333 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99943 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99912 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99991 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47283 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47099 * 119.99898 * 8 6 4 11 11 H 1.48502 * 109.47132 * 239.99822 * 8 6 4 12 12 C 1.34770 * 119.99891 * 180.02562 * 2 1 3 13 13 O 1.21600 * 119.99678 * 184.80922 * 12 2 1 14 14 C 1.47536 * 120.00176 * 4.81665 * 12 2 1 15 15 C 1.40352 * 120.47168 * 321.61316 * 14 12 2 16 16 C 1.36860 * 118.49117 * 179.77352 * 15 14 12 17 17 C 1.39398 * 119.37508 * 0.49480 * 16 15 14 18 18 N 1.38462 * 119.53495 * 179.77187 * 17 16 15 19 19 C 1.48001 * 111.00378 * 51.00532 * 18 17 16 20 20 C 1.50449 * 112.83137 * 84.83202 * 19 18 17 21 21 C 1.54317 * 108.49647 * 93.72994 * 20 19 18 22 22 C 1.45876 * 112.17975 * 281.47843 * 21 20 19 23 23 C 1.54305 * 112.19433 * 61.11959 * 22 21 20 24 24 C 1.48001 * 111.00116 * 179.72868 * 18 17 16 25 25 N 1.32598 * 120.92764 * 359.49010 * 17 16 15 26 26 C 1.31678 * 121.63353 * 0.26037 * 25 17 16 27 27 H 1.08998 * 109.47062 * 264.94964 * 1 2 3 28 28 H 1.09006 * 109.46805 * 24.94317 * 1 2 3 29 29 H 1.09000 * 109.47019 * 144.94325 * 1 2 3 30 30 H 1.09003 * 109.46889 * 30.00736 * 3 2 1 31 31 H 1.08996 * 109.46773 * 149.99907 * 3 2 1 32 32 H 0.96996 * 120.00213 * 180.02562 * 7 6 4 33 33 H 1.07993 * 120.75452 * 359.97438 * 15 14 12 34 34 H 1.07995 * 120.30947 * 180.26683 * 16 15 14 35 35 H 1.09003 * 108.80640 * 323.97426 * 19 18 17 36 36 H 1.08999 * 108.81421 * 205.69999 * 19 18 17 37 37 H 1.08994 * 109.63668 * 334.02544 * 20 19 18 38 38 H 1.09002 * 109.62998 * 213.42633 * 20 19 18 39 39 H 1.08996 * 108.94151 * 42.17765 * 21 20 19 40 40 H 1.08999 * 108.93733 * 160.78472 * 21 20 19 41 41 H 1.09002 * 108.93830 * 181.81872 * 22 21 20 42 42 H 1.09009 * 108.93746 * 300.42242 * 22 21 20 43 43 H 1.08995 * 109.63244 * 41.15144 * 23 22 21 44 44 H 1.09001 * 109.63495 * 161.75196 * 23 22 21 45 45 H 1.08994 * 108.81140 * 70.47699 * 24 18 17 46 46 H 1.09004 * 108.81001 * 312.20772 * 24 18 17 47 47 H 1.08004 * 119.74223 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0981 1.0960 -2.2416 6 6 3.1268 2.8776 -1.6726 7 7 3.5542 3.6177 -0.6730 8 14 3.4387 3.4166 -3.4337 9 1 2.8606 2.4168 -4.3672 10 1 2.8016 4.7376 -3.6673 11 1 4.9014 3.5244 -3.6668 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1690 0.0878 14 6 1.4051 -2.4426 -0.1084 15 6 0.1768 -2.6148 0.5485 16 6 -0.4716 -3.8129 0.4170 17 6 0.1068 -4.8227 -0.3505 18 7 -0.5440 -6.0377 -0.4820 19 6 -1.9509 -5.8437 -0.8985 20 6 -2.1048 -5.7056 -2.3887 21 6 -2.4138 -7.0971 -2.9799 22 6 -1.2173 -7.9230 -3.0990 23 6 -0.5528 -8.1870 -1.7316 24 6 0.2303 -6.9644 -1.3376 25 7 1.2687 -4.6340 -0.9610 26 6 1.9226 -3.4952 -0.8645 27 1 -0.3633 -0.0905 1.0237 28 1 -0.3633 0.9319 -0.4334 29 1 -0.3633 -0.8412 -0.5903 30 1 1.6084 2.0284 0.5140 31 1 3.1499 1.1384 0.5138 32 1 4.0310 4.4436 -0.8501 33 1 -0.2487 -1.8188 1.1416 34 1 -1.4205 -3.9757 0.9062 35 1 -2.3380 -4.9438 -0.4204 36 1 -2.5381 -6.6981 -0.5621 37 1 -1.1794 -5.3224 -2.8185 38 1 -2.9252 -5.0231 -2.6104 39 1 -3.1311 -7.6044 -2.3347 40 1 -2.8566 -6.9713 -3.9679 41 1 -1.4895 -8.8772 -3.5501 42 1 -0.5020 -7.4179 -3.7483 43 1 -1.3203 -8.3869 -0.9840 44 1 0.1184 -9.0423 -1.8096 45 1 1.1236 -7.2779 -0.7975 46 1 0.5358 -6.4363 -2.2410 47 1 2.8667 -3.3746 -1.3750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075699034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:23 Heat of formation + Delta-G solvation = 19.690900 kcal Electronic energy + Delta-G solvation = -26773.499698 eV Core-core repulsion = 23149.726591 eV Total energy + Delta-G solvation = -3623.773107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03783 -39.45105 -38.12552 -34.97915 -34.93084 -33.12059 -32.61319 -32.01129 -30.34910 -27.91103 -27.04833 -25.89065 -25.63869 -23.74787 -22.99129 -22.27974 -20.86662 -20.19219 -19.17837 -17.56411 -16.94070 -16.55041 -16.48192 -15.98866 -15.56923 -15.23370 -14.83435 -14.50123 -14.41084 -14.29350 -14.02519 -13.55555 -13.34777 -13.23382 -13.20450 -12.77768 -12.52456 -12.34155 -12.20176 -12.01747 -11.81323 -11.65927 -11.36004 -11.21304 -11.02007 -10.92206 -10.90942 -10.62884 -10.57972 -10.18809 -9.94127 -9.78385 -9.62118 -9.56205 -8.97413 -8.45905 -8.06847 -7.68119 -6.06593 -4.11680 0.93617 1.32629 3.15927 3.28647 3.35886 3.38593 3.44101 3.83704 4.07384 4.27413 4.33104 4.42452 4.43613 4.65947 4.75212 4.84995 4.89346 4.96987 5.00390 5.07338 5.12487 5.23370 5.28119 5.32615 5.36481 5.44436 5.61120 5.64740 5.70976 5.72240 5.75557 5.78390 5.80448 5.92373 5.94717 5.97602 6.02984 6.14914 6.16668 6.42444 6.59932 7.00065 7.07277 7.41495 7.49244 7.89720 7.97210 8.20129 8.34219 8.85887 9.02304 9.53626 11.01516 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.002844 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.238748 B = 9843.663837 C =10215.444159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.594 5.594 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.554 3.446 13 O -0.536 6.536 14 C -0.199 4.199 15 C -0.031 4.031 16 C -0.201 4.201 17 C 0.327 3.673 18 N -0.486 5.486 19 C 0.061 3.939 20 C -0.151 4.151 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.123 4.123 24 C 0.069 3.931 25 N -0.525 5.525 26 C 0.179 3.821 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.657 -21.399 -0.779 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.325 5.325 3 C 0.125 3.875 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.340 3.660 13 O -0.414 6.414 14 C -0.205 4.205 15 C -0.057 4.057 16 C -0.223 4.223 17 C 0.094 3.906 18 N -0.203 5.203 19 C -0.064 4.064 20 C -0.190 4.190 21 C -0.154 4.154 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.057 4.057 25 N -0.240 5.240 26 C 0.021 3.979 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.640 -22.155 -0.771 26.566 hybrid contribution -0.154 1.414 -1.066 1.778 sum -14.794 -20.741 -1.837 25.543 Atomic orbital electron populations 1.21947 0.81718 1.03081 0.99750 1.48067 1.06113 1.07662 1.70696 1.19362 0.92750 0.77732 0.97667 1.21469 1.36602 1.06379 0.92232 0.92362 1.24941 0.95293 0.96362 0.97497 1.69942 1.38313 1.14329 1.30689 0.86434 0.78136 0.78309 0.84503 1.19795 1.20942 1.20801 1.17885 0.87067 0.83060 0.77980 1.90771 1.13442 1.87042 1.50169 1.21078 0.97480 0.97584 1.04390 1.21714 0.92178 0.96937 0.94855 1.21177 1.03069 0.93797 1.04291 1.19902 0.90800 0.88649 0.91299 1.58821 1.03211 1.08157 1.50077 1.22138 0.86133 1.03311 0.94867 1.21953 1.02883 0.97802 0.96324 1.20550 0.98228 0.95306 1.01309 1.20635 0.97971 1.00043 0.97499 1.21506 1.00129 0.97448 0.97041 1.21714 0.95657 0.91772 0.96545 1.67697 1.09468 1.24313 1.22490 1.22687 0.97254 0.85757 0.92240 0.93520 0.90523 0.92175 0.94777 0.93501 0.92712 0.83558 0.84501 0.90056 0.89688 0.91231 0.90660 0.91906 0.92096 0.92001 0.91969 0.90825 0.90702 0.90381 0.91974 0.81813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 8.87 59.85 0.53 1.77 16 2 N -0.59 -12.72 2.86 -184.19 -0.53 -13.24 16 3 C 0.24 6.38 5.17 -5.19 -0.03 6.35 16 4 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.55 11.96 7.37 -12.47 -0.09 11.87 16 13 O -0.54 -13.84 16.46 5.28 0.09 -13.75 16 14 C -0.20 -3.37 5.27 -104.82 -0.55 -3.93 16 15 C -0.03 -0.41 7.62 -39.29 -0.30 -0.71 16 16 C -0.20 -2.35 8.87 -39.65 -0.35 -2.70 16 17 C 0.33 4.20 6.30 -155.28 -0.98 3.22 16 18 N -0.49 -5.10 4.71 -174.43 -0.82 -5.92 16 19 C 0.06 0.48 5.02 -4.49 -0.02 0.46 16 20 C -0.15 -1.17 5.58 -27.32 -0.15 -1.33 16 21 C -0.12 -0.76 5.30 -29.41 -0.16 -0.91 16 22 C -0.12 -0.84 5.30 -29.42 -0.16 -1.00 16 23 C -0.12 -0.90 5.63 -27.32 -0.15 -1.06 16 24 C 0.07 0.69 4.28 -4.49 -0.02 0.67 16 25 N -0.53 -7.79 8.51 -12.14 -0.10 -7.90 16 26 C 0.18 2.92 10.80 -17.13 -0.18 2.74 16 27 H 0.05 0.60 6.86 -51.93 -0.36 0.24 16 28 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 29 H 0.06 0.83 5.83 -51.93 -0.30 0.53 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.15 1.69 5.30 -52.49 -0.28 1.41 16 34 H 0.14 1.21 6.94 -52.49 -0.36 0.85 16 35 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 36 H 0.08 0.56 6.59 -51.93 -0.34 0.22 16 37 H 0.07 0.71 6.93 -51.93 -0.36 0.35 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.36 7.52 -51.93 -0.39 -0.03 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.49 7.52 -51.92 -0.39 0.10 16 43 H 0.07 0.52 7.08 -51.93 -0.37 0.15 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.71 5.83 -51.93 -0.30 0.41 16 47 H 0.16 2.68 8.05 -52.48 -0.42 2.26 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -33.34 363.57 -10.27 -43.60 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.06 Total: -1.11 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.03 Total: 1.81 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.72 Total: -52.83 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.34 -10.27 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075699034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.295 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds