Wall clock time and date at job start Tue Mar 31 2020 11:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99901 * 2 1 4 4 C 1.50693 * 109.47265 * 270.00398 * 3 2 1 5 5 H 1.07993 * 120.00333 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99943 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99912 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99991 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47283 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47099 * 119.99898 * 8 6 4 11 11 H 1.48502 * 109.47132 * 239.99822 * 8 6 4 12 12 C 1.34770 * 119.99891 * 180.02562 * 2 1 3 13 13 O 1.21600 * 119.99678 * 184.80922 * 12 2 1 14 14 C 1.47536 * 120.00176 * 4.81665 * 12 2 1 15 15 C 1.40352 * 120.47168 * 321.61316 * 14 12 2 16 16 C 1.36860 * 118.49117 * 179.77352 * 15 14 12 17 17 C 1.39398 * 119.37508 * 0.49480 * 16 15 14 18 18 N 1.38462 * 119.53495 * 179.77187 * 17 16 15 19 19 C 1.48001 * 111.00378 * 51.00532 * 18 17 16 20 20 C 1.50449 * 112.83137 * 84.83202 * 19 18 17 21 21 C 1.54317 * 108.49647 * 93.72994 * 20 19 18 22 22 C 1.45876 * 112.17975 * 281.47843 * 21 20 19 23 23 C 1.54305 * 112.19433 * 61.11959 * 22 21 20 24 24 C 1.48001 * 111.00116 * 179.72868 * 18 17 16 25 25 N 1.32598 * 120.92764 * 359.49010 * 17 16 15 26 26 C 1.31678 * 121.63353 * 0.26037 * 25 17 16 27 27 H 1.08998 * 109.47062 * 264.94964 * 1 2 3 28 28 H 1.09006 * 109.46805 * 24.94317 * 1 2 3 29 29 H 1.09000 * 109.47019 * 144.94325 * 1 2 3 30 30 H 1.09003 * 109.46889 * 30.00736 * 3 2 1 31 31 H 1.08996 * 109.46773 * 149.99907 * 3 2 1 32 32 H 0.96996 * 120.00213 * 180.02562 * 7 6 4 33 33 H 1.07993 * 120.75452 * 359.97438 * 15 14 12 34 34 H 1.07995 * 120.30947 * 180.26683 * 16 15 14 35 35 H 1.09003 * 108.80640 * 323.97426 * 19 18 17 36 36 H 1.08999 * 108.81421 * 205.69999 * 19 18 17 37 37 H 1.08994 * 109.63668 * 334.02544 * 20 19 18 38 38 H 1.09002 * 109.62998 * 213.42633 * 20 19 18 39 39 H 1.08996 * 108.94151 * 42.17765 * 21 20 19 40 40 H 1.08999 * 108.93733 * 160.78472 * 21 20 19 41 41 H 1.09002 * 108.93830 * 181.81872 * 22 21 20 42 42 H 1.09009 * 108.93746 * 300.42242 * 22 21 20 43 43 H 1.08995 * 109.63244 * 41.15144 * 23 22 21 44 44 H 1.09001 * 109.63495 * 161.75196 * 23 22 21 45 45 H 1.08994 * 108.81140 * 70.47699 * 24 18 17 46 46 H 1.09004 * 108.81001 * 312.20772 * 24 18 17 47 47 H 1.08004 * 119.74223 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0981 1.0960 -2.2416 6 6 3.1268 2.8776 -1.6726 7 7 3.5542 3.6177 -0.6730 8 14 3.4387 3.4166 -3.4337 9 1 2.8606 2.4168 -4.3672 10 1 2.8016 4.7376 -3.6673 11 1 4.9014 3.5244 -3.6668 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1690 0.0878 14 6 1.4051 -2.4426 -0.1084 15 6 0.1768 -2.6148 0.5485 16 6 -0.4716 -3.8129 0.4170 17 6 0.1068 -4.8227 -0.3505 18 7 -0.5440 -6.0377 -0.4820 19 6 -1.9509 -5.8437 -0.8985 20 6 -2.1048 -5.7056 -2.3887 21 6 -2.4138 -7.0971 -2.9799 22 6 -1.2173 -7.9230 -3.0990 23 6 -0.5528 -8.1870 -1.7316 24 6 0.2303 -6.9644 -1.3376 25 7 1.2687 -4.6340 -0.9610 26 6 1.9226 -3.4952 -0.8645 27 1 -0.3633 -0.0905 1.0237 28 1 -0.3633 0.9319 -0.4334 29 1 -0.3633 -0.8412 -0.5903 30 1 1.6084 2.0284 0.5140 31 1 3.1499 1.1384 0.5138 32 1 4.0310 4.4436 -0.8501 33 1 -0.2487 -1.8188 1.1416 34 1 -1.4205 -3.9757 0.9062 35 1 -2.3380 -4.9438 -0.4204 36 1 -2.5381 -6.6981 -0.5621 37 1 -1.1794 -5.3224 -2.8185 38 1 -2.9252 -5.0231 -2.6104 39 1 -3.1311 -7.6044 -2.3347 40 1 -2.8566 -6.9713 -3.9679 41 1 -1.4895 -8.8772 -3.5501 42 1 -0.5020 -7.4179 -3.7483 43 1 -1.3203 -8.3869 -0.9840 44 1 0.1184 -9.0423 -1.8096 45 1 1.1236 -7.2779 -0.7975 46 1 0.5358 -6.4363 -2.2410 47 1 2.8667 -3.3746 -1.3750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075699034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:22 Heat of formation + Delta-G solvation = -1.271320 kcal Electronic energy + Delta-G solvation = -26774.408688 eV Core-core repulsion = 23149.726591 eV Total energy + Delta-G solvation = -3624.682098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.08555 -40.71527 -39.29979 -36.74274 -35.77976 -34.85146 -33.83946 -32.95797 -31.48735 -29.71342 -28.03677 -27.31960 -26.42947 -25.38341 -23.99480 -23.71637 -21.47318 -21.01742 -20.65371 -18.72981 -18.46071 -18.21217 -17.78094 -17.11208 -16.84507 -16.37169 -16.25802 -15.86163 -15.57705 -15.37456 -14.95395 -14.61655 -14.55044 -14.33202 -14.21430 -13.98357 -13.72866 -13.52542 -13.45114 -13.41322 -13.09444 -12.93469 -12.82322 -12.56694 -12.41344 -12.23881 -12.03716 -11.72179 -11.57406 -11.47293 -11.25908 -11.04748 -10.83727 -10.73681 -10.65835 -10.44524 -9.51928 -9.04208 -8.24578 -6.39626 -0.23459 0.24881 1.35312 1.37950 1.49583 1.79274 2.19058 2.37978 2.48896 2.80109 3.05064 3.31376 3.63246 3.70295 3.82875 3.86316 3.98297 4.02520 4.07465 4.15275 4.28801 4.35063 4.40791 4.53631 4.59709 4.66441 4.70097 4.75687 4.79099 4.88480 4.89823 5.00481 5.01389 5.06301 5.10180 5.21267 5.21610 5.25556 5.27422 5.35227 5.39106 5.49064 5.52964 5.77564 5.79882 6.02980 6.10214 6.62895 6.70449 6.88842 7.22453 7.37746 8.82798 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020580 B = 0.002844 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.238748 B = 9843.663837 C =10215.444159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.267 1.267 11 H -0.281 1.281 12 C 0.549 3.451 13 O -0.596 6.596 14 C -0.220 4.220 15 C -0.021 4.021 16 C -0.186 4.186 17 C 0.327 3.673 18 N -0.483 5.483 19 C 0.057 3.943 20 C -0.149 4.149 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.116 4.116 24 C 0.071 3.929 25 N -0.539 5.539 26 C 0.170 3.830 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.032 0.968 31 H 0.001 0.999 32 H 0.268 0.732 33 H 0.170 0.830 34 H 0.179 0.821 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.040 0.960 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.376 -23.076 -1.098 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.330 5.330 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.192 1.192 11 H -0.207 1.207 12 C 0.338 3.662 13 O -0.478 6.478 14 C -0.227 4.227 15 C -0.046 4.046 16 C -0.208 4.208 17 C 0.093 3.907 18 N -0.200 5.200 19 C -0.067 4.067 20 C -0.188 4.188 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.054 4.054 25 N -0.254 5.254 26 C 0.012 3.988 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.188 0.812 34 H 0.196 0.804 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.431 -23.855 -1.090 30.166 hybrid contribution 0.930 1.787 -0.929 2.219 sum -17.501 -22.068 -2.019 28.237 Atomic orbital electron populations 1.22279 0.77972 1.03941 1.02631 1.48052 1.08456 1.06066 1.70408 1.18853 0.91366 0.79892 0.96236 1.21714 1.37069 1.06664 0.92922 0.93008 1.25849 0.94787 0.96359 1.02018 1.70051 1.38790 1.14818 1.32961 0.85361 0.77932 0.78440 0.79031 1.19302 1.19172 1.20695 1.18585 0.86657 0.84466 0.76497 1.90720 1.16233 1.88054 1.52842 1.20658 0.99321 0.95282 1.07391 1.21895 0.90426 0.98324 0.93957 1.21538 1.03987 0.92232 1.03012 1.20397 0.90143 0.89738 0.90423 1.58901 1.04376 1.06835 1.49856 1.22344 0.84282 1.05056 0.95044 1.21932 1.01852 0.98814 0.96158 1.20554 0.98271 0.94526 1.01886 1.20619 0.97765 1.00706 0.96874 1.21476 1.00217 0.96173 0.97516 1.21701 0.95809 0.92592 0.95341 1.67716 1.10733 1.23496 1.23470 1.22476 0.97164 0.86446 0.92748 0.89683 0.90920 0.89843 0.95053 0.98110 0.92288 0.81234 0.80358 0.88709 0.87431 0.94154 0.89460 0.90150 0.91745 0.90577 0.93682 0.89725 0.89892 0.92003 0.93856 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.19 8.87 127.77 1.13 3.32 16 2 N -0.60 -26.28 2.86 -854.91 -2.44 -28.72 16 3 C 0.26 14.11 5.17 85.63 0.44 14.56 16 4 C -0.55 -31.88 9.39 25.60 0.24 -31.64 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.53 5.46 84.66 0.46 0.99 16 7 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 8 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.55 24.76 7.37 86.70 0.64 25.39 16 13 O -0.60 -33.07 16.46 -4.03 -0.07 -33.14 16 14 C -0.22 -7.52 5.27 -19.99 -0.11 -7.63 16 15 C -0.02 -0.50 7.62 22.46 0.17 -0.32 16 16 C -0.19 -3.67 8.87 22.23 0.20 -3.47 16 17 C 0.33 7.77 6.30 133.25 0.84 8.61 16 18 N -0.48 -8.91 4.71 -705.79 -3.33 -12.24 16 19 C 0.06 0.68 5.02 85.27 0.43 1.10 16 20 C -0.15 -1.90 5.58 30.22 0.17 -1.73 16 21 C -0.12 -1.14 5.30 28.86 0.15 -0.99 16 22 C -0.12 -1.40 5.30 28.85 0.15 -1.25 16 23 C -0.12 -1.43 5.63 30.21 0.17 -1.26 16 24 C 0.07 1.35 4.28 85.26 0.37 1.72 16 25 N -0.54 -16.10 8.51 -192.32 -1.64 -17.73 16 26 C 0.17 5.79 10.80 85.03 0.92 6.70 16 27 H 0.09 1.90 6.86 -2.39 -0.02 1.88 16 28 H 0.07 2.23 8.03 -2.38 -0.02 2.21 16 29 H 0.08 2.11 5.83 -2.39 -0.01 2.09 16 30 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 31 H 0.00 0.05 7.36 -2.39 -0.02 0.03 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.17 3.25 5.30 -2.91 -0.02 3.23 16 34 H 0.18 2.08 6.94 -2.91 -0.02 2.06 16 35 H 0.09 0.90 5.93 -2.39 -0.01 0.89 16 36 H 0.11 0.87 6.59 -2.39 -0.02 0.86 16 37 H 0.04 0.77 6.93 -2.39 -0.02 0.75 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.55 7.52 -2.39 -0.02 0.54 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.04 0.67 7.52 -2.38 -0.02 0.65 16 43 H 0.08 0.89 7.08 -2.39 -0.02 0.87 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.04 1.00 5.83 -2.38 -0.01 0.98 16 47 H 0.15 5.31 8.05 -2.91 -0.02 5.29 16 Total: -1.00 -77.68 363.57 2.19 -75.49 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.97 Total: 10.91 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.38 Total: 14.10 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -7.12 Total: -114.71 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.07 Total: -33.14 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -77.68 2.19 -75.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075699034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.217 kcal (2) G-P(sol) polarization free energy of solvation -77.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds