Wall clock time and date at job start Tue Mar 31 2020 11:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99752 * 2 1 4 4 C 1.39921 * 111.00123 * 123.95223 * 2 1 3 5 5 C 1.38706 * 120.09939 * 299.98258 * 4 2 1 6 6 C 1.38229 * 119.99164 * 180.02562 * 5 4 2 7 7 C 1.38274 * 120.19702 * 359.97438 * 6 5 4 8 8 C 1.38246 * 120.19118 * 0.02562 * 7 6 5 9 9 C 1.38651 * 120.00692 * 359.97438 * 8 7 6 10 10 N 1.40201 * 120.09999 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99862 * 24.77227 * 10 9 8 12 12 O 1.21602 * 119.99907 * 5.62704 * 11 10 9 13 13 N 1.34774 * 120.00455 * 185.63005 * 11 10 9 14 14 C 1.46497 * 120.00566 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47305 * 89.99719 * 14 13 11 16 16 H 1.08004 * 119.99718 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00231 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00225 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00118 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47070 * 90.00117 * 19 17 15 21 21 H 1.48503 * 109.47179 * 209.99968 * 19 17 15 22 22 H 1.48500 * 109.47118 * 329.99984 * 19 17 15 23 23 C 1.46503 * 119.99697 * 359.97438 * 13 11 10 24 24 C 1.52998 * 109.47464 * 89.99928 * 23 13 11 25 25 C 1.52998 * 117.49996 * 243.62346 * 24 23 13 26 26 C 1.52995 * 117.50224 * 174.99980 * 24 23 13 27 27 H 1.09002 * 109.47074 * 296.04501 * 1 2 3 28 28 H 1.08999 * 109.47417 * 56.04892 * 1 2 3 29 29 H 1.08998 * 109.47011 * 176.04671 * 1 2 3 30 30 H 1.09002 * 109.46838 * 183.95830 * 3 2 1 31 31 H 1.09002 * 109.46760 * 303.95371 * 3 2 1 32 32 H 1.08993 * 109.46711 * 63.95526 * 3 2 1 33 33 H 1.08000 * 120.00047 * 0.03800 * 5 4 2 34 34 H 1.08002 * 119.90408 * 179.97438 * 6 5 4 35 35 H 1.07993 * 119.90651 * 180.27376 * 7 6 5 36 36 H 1.07998 * 120.00271 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00985 * 204.76914 * 10 9 8 38 38 H 1.08999 * 109.47910 * 210.00070 * 14 13 11 39 39 H 1.09001 * 109.46711 * 330.00449 * 14 13 11 40 40 H 0.96990 * 120.00489 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.46855 * 209.99809 * 23 13 11 42 42 H 1.08998 * 109.46912 * 329.99540 * 23 13 11 43 43 H 1.09007 * 115.54707 * 29.32684 * 24 23 13 44 44 H 1.09003 * 117.49572 * 359.97438 * 25 24 23 45 45 H 1.09002 * 117.50109 * 145.01411 * 25 24 23 46 46 H 1.08999 * 117.50247 * 214.98120 * 26 24 23 47 47 H 1.08997 * 117.49769 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9705 -0.7295 1.0835 5 6 1.6599 -0.3501 2.3810 6 6 2.1570 -1.0721 3.4498 7 6 2.9636 -2.1735 3.2302 8 6 3.2781 -2.5587 1.9402 9 6 2.7840 -1.8404 0.8621 10 7 3.1013 -2.2296 -0.4469 11 6 3.4339 -3.5094 -0.7074 12 8 3.3600 -4.3476 0.1705 13 7 3.8484 -3.8603 -1.9409 14 6 4.2104 -5.2513 -2.2240 15 6 2.9913 -6.0020 -2.6945 16 1 2.0419 -5.4935 -2.7751 17 6 3.0880 -7.3377 -3.0222 18 7 2.0242 -7.9927 -3.4333 19 14 4.7300 -8.2172 -2.8822 20 1 4.8668 -8.7966 -1.5217 21 1 4.7971 -9.3040 -3.8920 22 1 5.8314 -7.2504 -3.1216 23 6 3.9368 -2.8506 -2.9987 24 6 5.3313 -2.2213 -2.9878 25 6 5.4302 -0.7284 -2.6679 26 6 5.6640 -1.2216 -4.0972 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0828 1.3433 -0.0709 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8723 0.9233 33 1 1.0297 0.5093 2.5561 34 1 1.9146 -0.7751 4.4595 35 1 3.3457 -2.7368 4.0685 36 1 3.9080 -3.4197 1.7722 37 1 3.0814 -1.5779 -1.1651 38 1 4.9750 -5.2771 -3.0004 39 1 4.5969 -5.7178 -1.3178 40 1 2.0921 -8.9324 -3.6635 41 1 3.7580 -3.3208 -3.9656 42 1 3.1879 -2.0776 -2.8266 43 1 6.1355 -2.8665 -2.6339 44 1 4.5016 -0.1945 -2.4657 45 1 6.2994 -0.3911 -2.1033 46 1 6.6871 -1.2089 -4.4730 47 1 4.8893 -1.0120 -4.8347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078476119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:54 Heat of formation + Delta-G solvation = 52.977576 kcal Electronic energy + Delta-G solvation = -27479.677592 eV Core-core repulsion = 23857.347903 eV Total energy + Delta-G solvation = -3622.329689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55788 -39.14182 -37.38869 -36.38724 -34.76274 -34.16121 -32.41513 -29.93466 -29.42484 -28.12295 -27.70579 -26.21151 -24.54874 -23.20249 -22.36050 -21.76284 -20.94601 -20.79792 -19.09904 -18.01214 -17.16489 -16.89110 -16.48266 -15.48514 -15.18760 -15.15121 -14.91041 -14.81355 -14.33935 -14.08430 -13.92286 -13.64550 -13.49605 -13.18764 -12.70808 -12.55755 -12.32309 -12.24212 -12.20103 -11.84510 -11.81667 -11.54576 -11.50862 -11.46061 -11.22746 -10.91561 -10.58645 -10.36661 -10.17583 -10.03598 -9.92055 -9.49502 -9.24907 -8.65565 -8.61009 -8.55847 -7.91829 -7.51588 -6.05560 -4.04090 1.40790 1.57645 3.15470 3.31926 3.37638 3.39599 3.64434 3.77424 3.82717 4.09468 4.38545 4.42293 4.85554 4.94661 4.96665 5.03219 5.10121 5.16842 5.18243 5.27027 5.29844 5.36301 5.37678 5.44498 5.63024 5.66010 5.69956 5.73931 5.78847 5.83168 5.91289 5.97898 6.06319 6.12408 6.32007 6.36742 6.43856 6.63160 6.68517 6.74774 6.82064 6.90668 7.05111 7.29664 7.47774 7.56727 7.66269 8.49998 8.51539 8.98130 9.18542 9.54737 11.07982 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.004408 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.358051 B = 6350.798223 C = 7388.907147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.507 5.507 3 C 0.027 3.973 4 C 0.035 3.965 5 C -0.126 4.126 6 C -0.146 4.146 7 C -0.098 4.098 8 C -0.132 4.132 9 C 0.213 3.787 10 N -0.677 5.677 11 C 0.702 3.298 12 O -0.569 6.569 13 N -0.598 5.598 14 C 0.231 3.769 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.876 3.124 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.142 3.858 24 C -0.168 4.168 25 C -0.182 4.182 26 C -0.175 4.175 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.409 0.591 38 H 0.032 0.968 39 H 0.038 0.962 40 H 0.264 0.736 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 20.711 6.068 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.228 5.228 3 C -0.120 4.120 4 C -0.062 4.062 5 C -0.147 4.147 6 C -0.166 4.166 7 C -0.117 4.117 8 C -0.153 4.153 9 C 0.114 3.886 10 N -0.324 5.324 11 C 0.404 3.596 12 O -0.446 6.446 13 N -0.331 5.331 14 C 0.110 3.890 15 C -0.567 4.567 16 H 0.092 0.908 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 C 0.018 3.982 24 C -0.188 4.188 25 C -0.219 4.219 26 C -0.212 4.212 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.171 0.829 37 H 0.247 0.753 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.320 19.602 6.049 20.781 hybrid contribution 0.324 0.187 0.322 0.493 sum 3.643 19.789 6.370 21.106 Atomic orbital electron populations 1.22430 0.85825 1.02958 1.00450 1.59487 1.08644 1.13624 1.41038 1.22467 1.00900 0.87960 1.00640 1.18373 1.00699 0.97873 0.89275 1.21218 1.00827 1.00208 0.92446 1.20868 1.00500 0.96982 0.98252 1.21074 0.97742 0.96237 0.96607 1.21548 1.01548 1.01388 0.90799 1.17464 0.93669 0.93171 0.84329 1.42854 1.70710 1.10407 1.08380 1.15888 0.78478 0.81482 0.83744 1.90852 1.59354 1.49397 1.44974 1.47166 1.67787 1.10651 1.07520 1.19608 0.96533 0.76212 0.96612 1.21353 0.95834 0.95160 1.44304 0.90765 1.24835 0.96448 0.97086 0.94569 1.69897 1.28719 1.09830 1.45200 0.86865 0.84589 0.79912 0.78382 1.19918 1.21137 1.19041 1.21010 0.92980 0.90880 0.93379 1.22960 1.00147 0.91986 1.03709 1.23020 1.03045 0.97033 0.98830 1.22905 1.02521 1.03966 0.91820 0.95196 0.91087 0.90949 0.91306 0.91091 0.95215 0.86600 0.86543 0.85969 0.82937 0.75311 0.94978 0.94420 0.92607 0.88853 0.91672 0.87415 0.88929 0.89185 0.88963 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.35 60.07 0.56 0.88 16 2 N -0.51 -5.97 4.33 -186.66 -0.81 -6.78 16 3 C 0.03 0.25 9.39 60.07 0.56 0.81 16 4 C 0.03 0.48 4.75 -83.54 -0.40 0.08 16 5 C -0.13 -1.54 8.58 -39.41 -0.34 -1.87 16 6 C -0.15 -1.76 10.04 -39.57 -0.40 -2.15 16 7 C -0.10 -1.33 10.04 -39.57 -0.40 -1.73 16 8 C -0.13 -2.20 8.72 -39.43 -0.34 -2.54 16 9 C 0.21 3.48 6.45 -83.42 -0.54 2.94 16 10 N -0.68 -11.54 5.16 -14.07 -0.07 -11.61 16 11 C 0.70 14.86 8.09 -86.92 -0.70 14.15 16 12 O -0.57 -14.13 13.09 5.28 0.07 -14.06 16 13 N -0.60 -12.34 2.46 -180.80 -0.44 -12.79 16 14 C 0.23 5.61 4.23 -5.20 -0.02 5.59 16 15 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 16 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 18 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 19 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 23 C 0.14 2.27 5.50 -4.04 -0.02 2.25 16 24 C -0.17 -2.24 6.01 -90.62 -0.54 -2.79 16 25 C -0.18 -1.97 10.18 -26.73 -0.27 -2.24 16 26 C -0.17 -1.85 10.25 -26.74 -0.27 -2.13 16 27 H 0.03 0.28 7.13 -51.93 -0.37 -0.09 16 28 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.03 0.25 7.35 -51.93 -0.38 -0.13 16 33 H 0.12 1.17 7.02 -52.49 -0.37 0.80 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.15 2.90 5.78 -52.49 -0.30 2.59 16 37 H 0.41 6.11 5.86 -40.82 -0.24 5.87 16 38 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 39 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 42 H 0.07 0.93 6.02 -51.93 -0.31 0.62 16 43 H 0.11 1.58 8.14 -51.92 -0.42 1.16 16 44 H 0.09 0.93 7.92 -51.93 -0.41 0.52 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -33.37 380.89 -10.32 -43.69 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.35 Total: 8.19 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.56 Total: -2.23 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.55 Total: -58.21 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.07 Total: -14.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.37 -10.32 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078476119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.668 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds