Wall clock time and date at job start Tue Mar 31 2020 11:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99752 * 2 1 4 4 C 1.39921 * 111.00123 * 123.95223 * 2 1 3 5 5 C 1.38706 * 120.09939 * 299.98258 * 4 2 1 6 6 C 1.38229 * 119.99164 * 180.02562 * 5 4 2 7 7 C 1.38274 * 120.19702 * 359.97438 * 6 5 4 8 8 C 1.38246 * 120.19118 * 0.02562 * 7 6 5 9 9 C 1.38651 * 120.00692 * 359.97438 * 8 7 6 10 10 N 1.40201 * 120.09999 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99862 * 24.77227 * 10 9 8 12 12 O 1.21602 * 119.99907 * 5.62704 * 11 10 9 13 13 N 1.34774 * 120.00455 * 185.63005 * 11 10 9 14 14 C 1.46497 * 120.00566 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47305 * 89.99719 * 14 13 11 16 16 H 1.08004 * 119.99718 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00231 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00225 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00118 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47070 * 90.00117 * 19 17 15 21 21 H 1.48503 * 109.47179 * 209.99968 * 19 17 15 22 22 H 1.48500 * 109.47118 * 329.99984 * 19 17 15 23 23 C 1.46503 * 119.99697 * 359.97438 * 13 11 10 24 24 C 1.52998 * 109.47464 * 89.99928 * 23 13 11 25 25 C 1.52998 * 117.49996 * 243.62346 * 24 23 13 26 26 C 1.52995 * 117.50224 * 174.99980 * 24 23 13 27 27 H 1.09002 * 109.47074 * 296.04501 * 1 2 3 28 28 H 1.08999 * 109.47417 * 56.04892 * 1 2 3 29 29 H 1.08998 * 109.47011 * 176.04671 * 1 2 3 30 30 H 1.09002 * 109.46838 * 183.95830 * 3 2 1 31 31 H 1.09002 * 109.46760 * 303.95371 * 3 2 1 32 32 H 1.08993 * 109.46711 * 63.95526 * 3 2 1 33 33 H 1.08000 * 120.00047 * 0.03800 * 5 4 2 34 34 H 1.08002 * 119.90408 * 179.97438 * 6 5 4 35 35 H 1.07993 * 119.90651 * 180.27376 * 7 6 5 36 36 H 1.07998 * 120.00271 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00985 * 204.76914 * 10 9 8 38 38 H 1.08999 * 109.47910 * 210.00070 * 14 13 11 39 39 H 1.09001 * 109.46711 * 330.00449 * 14 13 11 40 40 H 0.96990 * 120.00489 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.46855 * 209.99809 * 23 13 11 42 42 H 1.08998 * 109.46912 * 329.99540 * 23 13 11 43 43 H 1.09007 * 115.54707 * 29.32684 * 24 23 13 44 44 H 1.09003 * 117.49572 * 359.97438 * 25 24 23 45 45 H 1.09002 * 117.50109 * 145.01411 * 25 24 23 46 46 H 1.08999 * 117.50247 * 214.98120 * 26 24 23 47 47 H 1.08997 * 117.49769 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9705 -0.7295 1.0835 5 6 1.6599 -0.3501 2.3810 6 6 2.1570 -1.0721 3.4498 7 6 2.9636 -2.1735 3.2302 8 6 3.2781 -2.5587 1.9402 9 6 2.7840 -1.8404 0.8621 10 7 3.1013 -2.2296 -0.4469 11 6 3.4339 -3.5094 -0.7074 12 8 3.3600 -4.3476 0.1705 13 7 3.8484 -3.8603 -1.9409 14 6 4.2104 -5.2513 -2.2240 15 6 2.9913 -6.0020 -2.6945 16 1 2.0419 -5.4935 -2.7751 17 6 3.0880 -7.3377 -3.0222 18 7 2.0242 -7.9927 -3.4333 19 14 4.7300 -8.2172 -2.8822 20 1 4.8668 -8.7966 -1.5217 21 1 4.7971 -9.3040 -3.8920 22 1 5.8314 -7.2504 -3.1216 23 6 3.9368 -2.8506 -2.9987 24 6 5.3313 -2.2213 -2.9878 25 6 5.4302 -0.7284 -2.6679 26 6 5.6640 -1.2216 -4.0972 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0828 1.3433 -0.0709 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8723 0.9233 33 1 1.0297 0.5093 2.5561 34 1 1.9146 -0.7751 4.4595 35 1 3.3457 -2.7368 4.0685 36 1 3.9080 -3.4197 1.7722 37 1 3.0814 -1.5779 -1.1651 38 1 4.9750 -5.2771 -3.0004 39 1 4.5969 -5.7178 -1.3178 40 1 2.0921 -8.9324 -3.6635 41 1 3.7580 -3.3208 -3.9656 42 1 3.1879 -2.0776 -2.8266 43 1 6.1355 -2.8665 -2.6339 44 1 4.5016 -0.1945 -2.4657 45 1 6.2994 -0.3911 -2.1033 46 1 6.6871 -1.2089 -4.4730 47 1 4.8893 -1.0120 -4.8347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078476119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:53 Heat of formation + Delta-G solvation = 32.463797 kcal Electronic energy + Delta-G solvation = -27480.567136 eV Core-core repulsion = 23857.347903 eV Total energy + Delta-G solvation = -3623.219233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.89976 -40.38715 -38.51852 -37.37926 -36.31142 -35.65560 -34.53640 -31.12993 -30.78443 -29.68925 -28.46101 -27.69181 -25.47560 -24.91432 -23.28946 -23.15905 -22.03842 -21.91398 -20.57024 -19.38842 -19.08123 -18.44309 -17.59058 -16.75079 -16.74106 -16.27729 -16.04779 -15.93000 -15.77187 -15.39058 -15.15911 -14.93096 -14.68408 -14.49857 -14.42363 -13.89331 -13.67583 -13.45276 -13.15604 -13.14302 -12.96087 -12.82419 -12.60570 -12.54598 -12.43571 -12.30061 -12.25383 -12.05631 -11.76093 -11.45392 -11.27945 -11.06557 -10.81665 -10.72284 -9.69600 -9.57697 -9.48517 -8.81847 -8.32655 -6.37646 0.33817 0.45258 1.33108 1.37873 1.45939 1.68946 2.16315 2.32053 2.77517 2.85346 2.94493 3.01595 3.11963 3.81474 3.97083 3.99351 4.10140 4.17975 4.21324 4.24693 4.39770 4.44564 4.48637 4.59342 4.62388 4.66359 4.71449 4.75105 4.81787 4.82804 4.90107 4.95638 4.99291 5.03055 5.06090 5.26352 5.28008 5.31947 5.40439 5.45446 5.56882 5.59772 5.67747 5.91249 5.96974 6.04239 6.27981 6.44280 6.63104 7.00752 7.23873 7.59262 8.84610 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.004408 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.358051 B = 6350.798223 C = 7388.907147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.523 5.523 3 C 0.028 3.972 4 C 0.043 3.957 5 C -0.123 4.123 6 C -0.133 4.133 7 C -0.104 4.104 8 C -0.157 4.157 9 C 0.176 3.824 10 N -0.660 5.660 11 C 0.696 3.304 12 O -0.616 6.616 13 N -0.605 5.605 14 C 0.244 3.756 15 C -0.535 4.535 16 H 0.025 0.975 17 C 0.013 3.987 18 N -0.946 5.946 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.274 1.274 22 H -0.237 1.237 23 C 0.142 3.858 24 C -0.192 4.192 25 C -0.168 4.168 26 C -0.155 4.155 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.418 0.582 38 H 0.053 0.947 39 H 0.021 0.979 40 H 0.268 0.732 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 23.906 6.579 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.245 5.245 3 C -0.118 4.118 4 C -0.054 4.054 5 C -0.144 4.144 6 C -0.153 4.153 7 C -0.123 4.123 8 C -0.179 4.179 9 C 0.078 3.922 10 N -0.308 5.308 11 C 0.398 3.602 12 O -0.497 6.497 13 N -0.338 5.338 14 C 0.121 3.879 15 C -0.574 4.574 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.586 5.586 19 Si 0.770 3.230 20 H -0.202 1.202 21 H -0.199 1.199 22 H -0.160 1.160 23 C 0.019 3.981 24 C -0.211 4.211 25 C -0.205 4.205 26 C -0.192 4.192 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.324 22.892 6.545 24.199 hybrid contribution -0.139 -0.683 0.229 0.733 sum 4.185 22.209 6.774 23.593 Atomic orbital electron populations 1.22438 0.85117 1.01799 1.02198 1.59457 1.09311 1.15222 1.40460 1.22532 1.00815 0.86347 1.02103 1.18502 0.99382 0.96796 0.90741 1.21580 1.00433 1.00779 0.91582 1.21273 0.98489 0.95448 1.00039 1.21295 0.98079 0.97161 0.95723 1.21423 1.02571 1.01172 0.92686 1.17766 0.95930 0.94940 0.83548 1.42523 1.70109 1.08835 1.09313 1.16102 0.78326 0.82451 0.83335 1.90816 1.61335 1.51104 1.46426 1.47110 1.67792 1.10256 1.08606 1.19240 0.94808 0.77892 0.95923 1.21556 0.95602 0.95805 1.44414 0.95618 1.25820 1.00897 0.97888 0.93905 1.70051 1.31532 1.10445 1.46584 0.85719 0.79926 0.79065 0.78247 1.20211 1.19933 1.16023 1.21177 0.95485 0.90082 0.91306 1.22688 0.97748 0.93260 1.07428 1.23100 1.03873 0.94417 0.99092 1.23021 1.03647 1.00902 0.91665 0.93621 0.89106 0.93627 0.91511 0.89241 0.94027 0.83607 0.83012 0.84293 0.86352 0.74233 0.92936 0.96121 0.92281 0.89976 0.90192 0.88949 0.87953 0.88303 0.87582 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.35 127.69 1.19 1.79 16 2 N -0.52 -11.25 4.33 -744.47 -3.22 -14.47 16 3 C 0.03 0.42 9.39 127.69 1.20 1.61 16 4 C 0.04 1.11 4.75 38.25 0.18 1.29 16 5 C -0.12 -2.63 8.58 22.38 0.19 -2.43 16 6 C -0.13 -2.82 10.04 22.28 0.22 -2.59 16 7 C -0.10 -2.77 10.04 22.28 0.22 -2.55 16 8 C -0.16 -5.47 8.72 22.37 0.20 -5.28 16 9 C 0.18 5.86 6.45 38.19 0.25 6.11 16 10 N -0.66 -23.28 5.16 -316.67 -1.63 -24.91 16 11 C 0.70 31.13 8.09 179.05 1.45 32.58 16 12 O -0.62 -32.85 13.09 -4.04 -0.05 -32.91 16 13 N -0.60 -26.08 2.46 -844.20 -2.07 -28.15 16 14 C 0.24 12.25 4.23 85.63 0.36 12.61 16 15 C -0.54 -32.30 9.94 25.60 0.25 -32.04 16 16 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 17 C 0.01 0.77 5.47 84.65 0.46 1.23 16 18 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 19 Si 0.95 45.17 27.47 68.60 1.88 47.05 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 23 C 0.14 4.61 5.50 86.38 0.48 5.09 16 24 C -0.19 -4.96 6.01 -10.80 -0.06 -5.02 16 25 C -0.17 -3.25 10.18 30.59 0.31 -2.94 16 26 C -0.15 -2.90 10.25 30.59 0.31 -2.59 16 27 H 0.05 0.72 7.13 -2.39 -0.02 0.70 16 28 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 32 H 0.04 0.52 7.35 -2.39 -0.02 0.51 16 33 H 0.15 2.25 7.02 -2.91 -0.02 2.23 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.12 4.92 5.78 -2.91 -0.02 4.90 16 37 H 0.42 12.54 5.86 -92.71 -0.54 12.00 16 38 H 0.05 2.42 7.13 -2.39 -0.02 2.40 16 39 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 40 H 0.27 16.00 8.31 -92.72 -0.77 15.23 16 41 H 0.08 2.80 8.07 -2.39 -0.02 2.78 16 42 H 0.08 2.29 6.02 -2.39 -0.01 2.27 16 43 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 44 H 0.10 1.79 7.92 -2.39 -0.02 1.77 16 45 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 47 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -78.52 380.89 2.79 -75.73 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.37 Total: 31.34 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 7.22 Total: 6.87 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -6.63 Total: -128.09 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.05 Total: -32.91 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Total: -78.52 2.79 -75.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078476119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.196 kcal (2) G-P(sol) polarization free energy of solvation -78.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds