Wall clock time and date at job start Tue Mar 31 2020 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99860 * 2 1 4 4 C 1.50699 * 109.47217 * 270.00220 * 3 2 1 5 5 H 1.07999 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99787 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99505 * 179.97438 * 6 4 3 8 8 Si 1.86791 * 120.00046 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47356 * 89.99945 * 8 6 4 10 10 H 1.48502 * 109.47068 * 209.99861 * 8 6 4 11 11 H 1.48502 * 109.47414 * 329.99318 * 8 6 4 12 12 C 1.34777 * 120.00015 * 180.02562 * 2 1 3 13 13 O 1.21593 * 119.99950 * 179.72193 * 12 2 1 14 14 N 1.34782 * 119.99901 * 359.97438 * 12 2 1 15 15 C 1.40192 * 120.00024 * 174.36269 * 14 12 2 16 16 C 1.38843 * 119.99495 * 326.56918 * 15 14 12 17 17 C 1.38071 * 120.00695 * 179.72331 * 16 15 14 18 18 C 1.38879 * 119.99044 * 0.55016 * 17 16 15 19 19 N 1.39922 * 120.00256 * 179.69922 * 18 17 16 20 20 C 1.46845 * 110.99717 * 124.23221 * 19 18 17 21 21 C 1.53040 * 109.52445 * 174.16107 * 20 19 18 22 22 C 1.53120 * 109.27527 * 59.17713 * 21 20 19 23 23 C 1.53118 * 109.16479 * 302.34738 * 22 21 20 24 24 C 1.46845 * 111.00067 * 0.02593 * 19 18 17 25 25 C 1.38879 * 119.99222 * 359.72343 * 18 17 16 26 26 C 1.38071 * 119.99668 * 359.97438 * 25 18 17 27 27 H 1.08999 * 109.46955 * 269.99710 * 1 2 3 28 28 H 1.09000 * 109.47213 * 29.99500 * 1 2 3 29 29 H 1.08998 * 109.46957 * 149.99842 * 1 2 3 30 30 H 1.08997 * 109.46904 * 30.00778 * 3 2 1 31 31 H 1.09003 * 109.46825 * 150.00237 * 3 2 1 32 32 H 0.97006 * 119.99371 * 179.97438 * 7 6 4 33 33 H 0.97001 * 119.99694 * 354.36017 * 14 12 2 34 34 H 1.08001 * 119.99436 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.00623 * 180.25132 * 17 16 15 36 36 H 1.08998 * 109.46564 * 294.17856 * 20 19 18 37 37 H 1.09005 * 109.46736 * 54.14561 * 20 19 18 38 38 H 1.08997 * 109.50360 * 299.23855 * 21 20 19 39 39 H 1.08991 * 109.50204 * 179.12093 * 21 20 19 40 40 H 1.09002 * 109.52260 * 182.44005 * 22 21 20 41 41 H 1.09006 * 109.52126 * 62.25421 * 22 21 20 42 42 H 1.09007 * 109.49943 * 297.71640 * 23 22 21 43 43 H 1.08998 * 109.50388 * 177.59664 * 23 22 21 44 44 H 1.09002 * 109.45668 * 305.84926 * 24 19 18 45 45 H 1.08999 * 109.46344 * 65.81490 * 24 19 18 46 46 H 1.07999 * 120.00146 * 180.02562 * 25 18 17 47 47 H 1.08001 * 120.00197 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8776 -1.6727 7 7 3.3464 3.2570 -2.9126 8 14 3.7350 3.9280 -0.2529 9 1 5.1083 3.5057 0.1226 10 1 3.7509 5.3548 -0.6641 11 1 2.8293 3.7586 0.9117 12 6 2.1389 -1.1672 -0.0005 13 8 3.3549 -1.1672 -0.0056 14 7 1.4650 -2.3344 -0.0005 15 6 2.1608 -3.5456 -0.1203 16 6 3.3157 -3.6096 -0.8884 17 6 4.0043 -4.8009 -1.0019 18 6 3.5354 -5.9380 -0.3570 19 7 4.2296 -7.1469 -0.4770 20 6 4.5860 -7.6823 0.8431 21 6 5.2121 -9.0693 0.6805 22 6 6.4595 -8.9606 -0.2008 23 6 6.0692 -8.3555 -1.5521 24 6 5.4183 -6.9893 -1.3247 25 6 2.3771 -5.8751 0.4066 26 6 1.6922 -4.6821 0.5249 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1384 0.5138 32 1 3.8233 4.0829 -3.0898 33 1 0.4986 -2.3364 0.0824 34 1 3.6781 -2.7262 -1.3931 35 1 4.9049 -4.8497 -1.5961 36 1 5.3011 -7.0153 1.3246 37 1 3.6895 -7.7584 1.4584 38 1 4.4926 -9.7406 0.2117 39 1 5.4907 -9.4597 1.6592 40 1 6.8841 -9.9526 -0.3549 41 1 7.1950 -8.3203 0.2863 42 1 5.3631 -9.0157 -2.0560 43 1 6.9602 -8.2361 -2.1684 44 1 5.1261 -6.5620 -2.2839 45 1 6.1294 -6.3254 -0.8331 46 1 2.0125 -6.7592 0.9085 47 1 0.7912 -4.6332 1.1184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085546570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:41 Heat of formation + Delta-G solvation = 15.717270 kcal Electronic energy + Delta-G solvation = -26293.731741 eV Core-core repulsion = 22669.786324 eV Total energy + Delta-G solvation = -3623.945417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57030 -39.71315 -37.77082 -35.20021 -34.61573 -33.01124 -32.31604 -31.69063 -30.39010 -28.82542 -27.72440 -25.93402 -24.53162 -24.10339 -22.68256 -21.87320 -21.16093 -19.90734 -19.35901 -17.95604 -17.38622 -16.96197 -16.72842 -15.58695 -15.17688 -15.03735 -14.78899 -14.61465 -14.28003 -14.15523 -13.85723 -13.70446 -13.39356 -13.37519 -13.28753 -12.80927 -12.50283 -12.45208 -12.31241 -12.06409 -12.02640 -11.51663 -11.48228 -11.16844 -11.09736 -10.95200 -10.71785 -10.56157 -10.52979 -10.31800 -10.12368 -9.59578 -9.40582 -8.94483 -8.75637 -8.58937 -7.80701 -7.28969 -6.08741 -4.07485 1.46937 1.58041 3.12418 3.29751 3.35634 3.37603 3.53722 3.74485 4.10457 4.38766 4.41686 4.48980 4.55772 4.64480 4.89661 5.00583 5.05786 5.11368 5.22708 5.23778 5.33080 5.39015 5.44620 5.47357 5.52289 5.57568 5.59696 5.71811 5.74369 5.76581 5.81169 5.84998 6.04667 6.05376 6.11645 6.17237 6.36390 6.45434 6.67036 6.73546 6.88760 7.00196 7.04402 7.24276 7.41906 7.49321 7.62222 8.45447 8.47699 8.94461 9.15273 9.51501 11.04701 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.002661 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.852615 B =10518.116341 C =11290.353431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.609 5.609 3 C 0.230 3.770 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.700 3.300 13 O -0.569 6.569 14 N -0.695 5.695 15 C 0.157 3.843 16 C -0.093 4.093 17 C -0.147 4.147 18 C 0.081 3.919 19 N -0.486 5.486 20 C 0.057 3.943 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.118 4.118 24 C 0.049 3.951 25 C -0.121 4.121 26 C -0.132 4.132 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.141 0.859 35 H 0.126 0.874 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.123 0.877 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -23.400 7.700 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.110 3.890 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.402 3.598 13 O -0.445 6.445 14 N -0.344 5.344 15 C 0.061 3.939 16 C -0.114 4.114 17 C -0.168 4.168 18 C -0.017 4.017 19 N -0.202 5.202 20 C -0.069 4.069 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.078 4.078 25 C -0.141 4.141 26 C -0.154 4.154 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.238 0.762 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.141 0.859 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.030 -23.507 7.360 24.654 hybrid contribution 0.211 1.271 0.866 1.553 sum -0.819 -22.236 8.226 23.723 Atomic orbital electron populations 1.21627 0.81157 1.02966 1.00404 1.47128 1.05829 1.05745 1.75671 1.19613 0.92257 0.78806 0.98372 1.21347 1.36952 1.07129 0.91323 0.90773 1.24852 0.95246 0.97352 0.95590 1.69904 1.41480 1.23564 1.18651 0.86845 0.80172 0.79728 0.82887 1.19888 1.21080 1.19066 1.15878 0.85517 0.80074 0.78373 1.90900 1.11366 1.85617 1.56618 1.42939 1.09918 1.03735 1.77848 1.17508 0.94761 0.84859 0.96788 1.21202 0.94917 0.98255 0.97009 1.21177 1.00791 0.91424 1.03412 1.18835 0.95406 0.88149 0.99282 1.59206 1.23005 1.24332 1.13685 1.22231 1.00130 0.95700 0.88857 1.21622 0.97431 0.96554 0.99990 1.21607 0.97517 1.00973 0.96022 1.21617 1.00300 0.96288 0.97362 1.22275 0.90379 0.97326 0.97864 1.20408 0.94881 0.97374 1.01481 1.20665 1.01708 0.92164 1.00850 0.93597 0.90058 0.92695 0.95042 0.94403 0.92563 0.76245 0.84092 0.85581 0.94060 0.90169 0.91005 0.91341 0.91727 0.92125 0.91018 0.91225 0.89841 0.93687 0.85867 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.15 59.85 0.61 1.85 16 2 N -0.61 -12.62 2.86 -188.73 -0.54 -13.16 16 3 C 0.23 5.64 4.23 -5.19 -0.02 5.62 16 4 C -0.53 -15.21 9.94 -34.44 -0.34 -15.55 16 5 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 8 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 9 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 12 C 0.70 14.76 8.01 -86.91 -0.70 14.07 16 13 O -0.57 -14.32 13.62 5.28 0.07 -14.25 16 14 N -0.69 -11.30 5.18 -14.17 -0.07 -11.37 16 15 C 0.16 2.50 6.28 -83.59 -0.53 1.98 16 16 C -0.09 -1.60 8.65 -39.42 -0.34 -1.94 16 17 C -0.15 -2.15 8.82 -39.41 -0.35 -2.49 16 18 C 0.08 1.05 5.65 -83.69 -0.47 0.57 16 19 N -0.49 -5.35 4.71 -171.09 -0.80 -6.16 16 20 C 0.06 0.53 5.26 -3.83 -0.02 0.51 16 21 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 22 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 23 C -0.12 -0.93 6.09 -26.65 -0.16 -1.09 16 24 C 0.05 0.48 4.15 -3.83 -0.02 0.47 16 25 C -0.12 -1.46 9.16 -39.41 -0.36 -1.82 16 26 C -0.13 -1.69 9.95 -39.42 -0.39 -2.08 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.05 0.67 6.45 -51.93 -0.34 0.34 16 30 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 31 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.40 5.08 6.63 -40.82 -0.27 4.81 16 34 H 0.14 2.88 6.42 -52.49 -0.34 2.54 16 35 H 0.13 1.67 5.80 -52.49 -0.30 1.36 16 36 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.69 6.70 -51.93 -0.35 0.35 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.85 6.98 -51.93 -0.36 0.49 16 45 H 0.04 0.47 7.74 -51.93 -0.40 0.07 16 46 H 0.12 1.22 7.15 -52.49 -0.38 0.84 16 47 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -34.46 367.93 -10.48 -44.94 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.27 Total: 4.50 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -3.51 Total: -0.01 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.64 Total: -57.64 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.07 Total: -14.25 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.46 -10.48 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085546570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.662 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds