Wall clock time and date at job start Tue Mar 31 2020 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99860 * 2 1 4 4 C 1.50699 * 109.47217 * 270.00220 * 3 2 1 5 5 H 1.07999 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99787 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99505 * 179.97438 * 6 4 3 8 8 Si 1.86791 * 120.00046 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47356 * 89.99945 * 8 6 4 10 10 H 1.48502 * 109.47068 * 209.99861 * 8 6 4 11 11 H 1.48502 * 109.47414 * 329.99318 * 8 6 4 12 12 C 1.34777 * 120.00015 * 180.02562 * 2 1 3 13 13 O 1.21593 * 119.99950 * 179.72193 * 12 2 1 14 14 N 1.34782 * 119.99901 * 359.97438 * 12 2 1 15 15 C 1.40192 * 120.00024 * 174.36269 * 14 12 2 16 16 C 1.38843 * 119.99495 * 326.56918 * 15 14 12 17 17 C 1.38071 * 120.00695 * 179.72331 * 16 15 14 18 18 C 1.38879 * 119.99044 * 0.55016 * 17 16 15 19 19 N 1.39922 * 120.00256 * 179.69922 * 18 17 16 20 20 C 1.46845 * 110.99717 * 124.23221 * 19 18 17 21 21 C 1.53040 * 109.52445 * 174.16107 * 20 19 18 22 22 C 1.53120 * 109.27527 * 59.17713 * 21 20 19 23 23 C 1.53118 * 109.16479 * 302.34738 * 22 21 20 24 24 C 1.46845 * 111.00067 * 0.02593 * 19 18 17 25 25 C 1.38879 * 119.99222 * 359.72343 * 18 17 16 26 26 C 1.38071 * 119.99668 * 359.97438 * 25 18 17 27 27 H 1.08999 * 109.46955 * 269.99710 * 1 2 3 28 28 H 1.09000 * 109.47213 * 29.99500 * 1 2 3 29 29 H 1.08998 * 109.46957 * 149.99842 * 1 2 3 30 30 H 1.08997 * 109.46904 * 30.00778 * 3 2 1 31 31 H 1.09003 * 109.46825 * 150.00237 * 3 2 1 32 32 H 0.97006 * 119.99371 * 179.97438 * 7 6 4 33 33 H 0.97001 * 119.99694 * 354.36017 * 14 12 2 34 34 H 1.08001 * 119.99436 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.00623 * 180.25132 * 17 16 15 36 36 H 1.08998 * 109.46564 * 294.17856 * 20 19 18 37 37 H 1.09005 * 109.46736 * 54.14561 * 20 19 18 38 38 H 1.08997 * 109.50360 * 299.23855 * 21 20 19 39 39 H 1.08991 * 109.50204 * 179.12093 * 21 20 19 40 40 H 1.09002 * 109.52260 * 182.44005 * 22 21 20 41 41 H 1.09006 * 109.52126 * 62.25421 * 22 21 20 42 42 H 1.09007 * 109.49943 * 297.71640 * 23 22 21 43 43 H 1.08998 * 109.50388 * 177.59664 * 23 22 21 44 44 H 1.09002 * 109.45668 * 305.84926 * 24 19 18 45 45 H 1.08999 * 109.46344 * 65.81490 * 24 19 18 46 46 H 1.07999 * 120.00146 * 180.02562 * 25 18 17 47 47 H 1.08001 * 120.00197 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8776 -1.6727 7 7 3.3464 3.2570 -2.9126 8 14 3.7350 3.9280 -0.2529 9 1 5.1083 3.5057 0.1226 10 1 3.7509 5.3548 -0.6641 11 1 2.8293 3.7586 0.9117 12 6 2.1389 -1.1672 -0.0005 13 8 3.3549 -1.1672 -0.0056 14 7 1.4650 -2.3344 -0.0005 15 6 2.1608 -3.5456 -0.1203 16 6 3.3157 -3.6096 -0.8884 17 6 4.0043 -4.8009 -1.0019 18 6 3.5354 -5.9380 -0.3570 19 7 4.2296 -7.1469 -0.4770 20 6 4.5860 -7.6823 0.8431 21 6 5.2121 -9.0693 0.6805 22 6 6.4595 -8.9606 -0.2008 23 6 6.0692 -8.3555 -1.5521 24 6 5.4183 -6.9893 -1.3247 25 6 2.3771 -5.8751 0.4066 26 6 1.6922 -4.6821 0.5249 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1384 0.5138 32 1 3.8233 4.0829 -3.0898 33 1 0.4986 -2.3364 0.0824 34 1 3.6781 -2.7262 -1.3931 35 1 4.9049 -4.8497 -1.5961 36 1 5.3011 -7.0153 1.3246 37 1 3.6895 -7.7584 1.4584 38 1 4.4926 -9.7406 0.2117 39 1 5.4907 -9.4597 1.6592 40 1 6.8841 -9.9526 -0.3549 41 1 7.1950 -8.3203 0.2863 42 1 5.3631 -9.0157 -2.0560 43 1 6.9602 -8.2361 -2.1684 44 1 5.1261 -6.5620 -2.2839 45 1 6.1294 -6.3254 -0.8331 46 1 2.0125 -6.7592 0.9085 47 1 0.7912 -4.6332 1.1184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085546570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:41 Heat of formation + Delta-G solvation = -7.084575 kcal Electronic energy + Delta-G solvation = -26294.720503 eV Core-core repulsion = 22669.786324 eV Total energy + Delta-G solvation = -3624.934179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79026 -40.92308 -38.86308 -36.75037 -35.96686 -34.72698 -33.76850 -32.57440 -31.32348 -30.58649 -28.96805 -27.38160 -25.54335 -25.02173 -24.36379 -22.88973 -22.31464 -20.85311 -20.65219 -19.28341 -19.15574 -18.57115 -17.97185 -16.85293 -16.64642 -16.29620 -15.95117 -15.86245 -15.45649 -15.05637 -15.03902 -14.89044 -14.63467 -14.49145 -14.43238 -14.14811 -13.97432 -13.68972 -13.63128 -13.32615 -13.15434 -12.99725 -12.81514 -12.43740 -12.27523 -12.10268 -12.04410 -11.80953 -11.75636 -11.46088 -11.31340 -11.29673 -11.11364 -10.83529 -10.07150 -9.89613 -9.45380 -8.42720 -8.34372 -6.39739 0.34207 0.44825 1.32449 1.37526 1.45546 1.69296 2.15364 2.30910 2.68819 2.95671 2.99224 3.05751 3.78653 3.83843 3.98468 4.03954 4.04620 4.20725 4.26666 4.36345 4.40922 4.50284 4.51640 4.55489 4.61242 4.63505 4.73264 4.79899 4.84292 4.87653 4.91076 4.95679 4.95817 5.09570 5.15646 5.20296 5.25880 5.34082 5.40826 5.44132 5.46071 5.56109 5.57812 5.88357 6.02335 6.08984 6.25966 6.35209 6.61362 7.00554 7.22062 7.59052 8.82796 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.002661 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.852615 B =10518.116341 C =11290.353431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.618 5.618 3 C 0.240 3.760 4 C -0.536 4.536 5 H 0.025 0.975 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.234 1.234 12 C 0.692 3.308 13 O -0.621 6.621 14 N -0.674 5.674 15 C 0.129 3.871 16 C -0.121 4.121 17 C -0.159 4.159 18 C 0.086 3.914 19 N -0.486 5.486 20 C 0.052 3.948 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.114 4.114 24 C 0.045 3.955 25 C -0.114 4.114 26 C -0.113 4.113 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.268 0.732 33 H 0.420 0.580 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.030 0.970 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.158 0.842 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 -25.665 10.669 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.353 5.353 3 C 0.117 3.883 4 C -0.575 4.575 5 H 0.043 0.957 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.157 1.157 12 C 0.394 3.606 13 O -0.501 6.501 14 N -0.325 5.325 15 C 0.034 3.966 16 C -0.142 4.142 17 C -0.180 4.180 18 C -0.012 4.012 19 N -0.201 5.201 20 C -0.073 4.073 21 C -0.151 4.151 22 C -0.161 4.161 23 C -0.151 4.151 24 C -0.083 4.083 25 C -0.135 4.135 26 C -0.134 4.134 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.260 0.740 34 H 0.112 0.888 35 H 0.144 0.856 36 H 0.049 0.951 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.053 0.947 46 H 0.175 0.825 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.633 -25.833 10.338 27.949 hybrid contribution 0.690 1.792 -0.167 1.927 sum -1.944 -24.041 10.172 26.176 Atomic orbital electron populations 1.21956 0.77567 1.03969 1.03152 1.47113 1.08063 1.04457 1.75624 1.19284 0.92577 0.81153 0.95257 1.21574 1.36804 1.06660 0.92443 0.95696 1.25880 0.95261 0.98984 0.98737 1.70063 1.42751 1.24511 1.21391 0.85682 0.79550 0.77656 0.79832 1.20390 1.19947 1.15699 1.16130 0.85091 0.81268 0.78085 1.90861 1.13904 1.86566 1.58815 1.42583 1.10633 1.02440 1.76883 1.17730 0.95035 0.85620 0.98256 1.20969 0.96824 0.97640 0.98788 1.21191 1.00939 0.91479 1.04380 1.19055 0.95834 0.88092 0.98180 1.59292 1.23267 1.22806 1.14773 1.22372 1.00643 0.96509 0.87740 1.21619 0.97270 0.95194 1.01015 1.21628 0.97537 1.01655 0.95317 1.21605 1.00484 0.94798 0.98240 1.22328 0.90060 0.98650 0.97212 1.20817 0.93913 0.98273 1.00497 1.20988 1.02288 0.90676 0.99409 0.89753 0.90851 0.90074 0.92434 0.96270 0.92268 0.73986 0.88754 0.85558 0.95111 0.88924 0.90686 0.89595 0.90123 0.92534 0.90903 0.90293 0.90755 0.94657 0.82474 0.82167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 10.15 127.77 1.30 3.42 16 2 N -0.62 -25.69 2.86 -869.28 -2.48 -28.18 16 3 C 0.24 11.86 4.23 85.63 0.36 12.22 16 4 C -0.54 -32.15 9.94 25.60 0.25 -31.90 16 5 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 6 C 0.01 0.55 5.47 84.65 0.46 1.01 16 7 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 8 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 9 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.23 -9.78 6.54 99.48 0.65 -9.13 16 12 C 0.69 30.02 8.01 179.05 1.44 31.46 16 13 O -0.62 -33.21 13.62 -4.01 -0.05 -33.26 16 14 N -0.67 -21.68 5.18 -317.01 -1.64 -23.33 16 15 C 0.13 4.10 6.28 38.09 0.24 4.34 16 16 C -0.12 -4.48 8.65 22.38 0.19 -4.29 16 17 C -0.16 -4.87 8.82 22.38 0.20 -4.68 16 18 C 0.09 2.16 5.65 38.16 0.22 2.37 16 19 N -0.49 -9.98 4.71 -695.20 -3.27 -13.26 16 20 C 0.05 0.85 5.26 86.33 0.45 1.31 16 21 C -0.11 -1.34 6.09 30.65 0.19 -1.16 16 22 C -0.12 -1.51 6.00 30.67 0.18 -1.32 16 23 C -0.11 -1.64 6.09 30.65 0.19 -1.45 16 24 C 0.04 0.88 4.15 86.33 0.36 1.24 16 25 C -0.11 -2.42 9.16 22.38 0.20 -2.22 16 26 C -0.11 -2.56 9.95 22.37 0.22 -2.34 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 29 H 0.08 1.81 6.45 -2.39 -0.02 1.80 16 30 H 0.06 2.55 7.13 -2.39 -0.02 2.53 16 31 H 0.02 1.02 6.85 -2.39 -0.02 1.01 16 32 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 33 H 0.42 9.74 6.63 -92.71 -0.62 9.13 16 34 H 0.09 4.35 6.42 -2.91 -0.02 4.33 16 35 H 0.13 3.69 5.80 -2.91 -0.02 3.67 16 36 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.09 1.27 6.70 -2.38 -0.02 1.25 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 42 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.57 6.98 -2.39 -0.02 1.56 16 45 H 0.04 0.76 7.74 -2.39 -0.02 0.74 16 46 H 0.16 2.32 7.15 -2.91 -0.02 2.30 16 47 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -81.57 367.93 1.49 -80.08 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.30 Total: 23.72 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.45 Total: 8.02 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -7.10 Total: -125.33 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.05 Total: -33.26 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -81.57 1.49 -80.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085546570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.997 kcal (2) G-P(sol) polarization free energy of solvation -81.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds