Wall clock time and date at job start Tue Mar 31 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99896 * 2 1 4 4 C 1.50705 * 109.47066 * 269.99622 * 3 2 1 5 5 H 1.08001 * 119.99987 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00127 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00059 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00144 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46966 * 59.99914 * 8 6 4 10 10 H 1.48498 * 109.47378 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47029 * 300.00164 * 8 6 4 12 12 C 1.34779 * 120.00050 * 179.97438 * 2 1 3 13 13 O 1.21273 * 120.00093 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99767 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46735 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.46769 * 180.02562 * 15 14 12 17 17 C 1.47439 * 110.99961 * 69.87863 * 16 15 14 18 18 C 1.54322 * 107.23490 * 123.25626 * 17 16 15 19 19 C 1.55135 * 103.02006 * 22.28319 * 18 17 16 20 20 C 1.47853 * 110.99956 * 190.71917 * 16 15 14 21 21 H 1.09002 * 110.36766 * 332.46788 * 20 16 15 22 22 C 1.50692 * 110.37266 * 94.80864 * 20 16 15 23 23 C 1.38649 * 120.79439 * 39.71844 * 22 20 16 24 24 C 1.38201 * 119.16683 * 179.75608 * 23 22 20 25 25 N 1.31869 * 120.75878 * 0.52930 * 24 23 22 26 26 C 1.31871 * 121.73287 * 359.74631 * 25 24 23 27 27 C 1.38202 * 120.75937 * 359.97298 * 26 25 24 28 28 H 1.09003 * 109.46862 * 270.00235 * 1 2 3 29 29 H 1.08996 * 109.47101 * 30.00360 * 1 2 3 30 30 H 1.09003 * 109.46885 * 149.99968 * 1 2 3 31 31 H 1.08998 * 109.47205 * 29.99486 * 3 2 1 32 32 H 1.08997 * 109.47416 * 150.00347 * 3 2 1 33 33 H 0.97001 * 120.00292 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46797 * 60.00350 * 14 12 2 35 35 H 1.08992 * 109.47518 * 300.00347 * 14 12 2 36 36 H 1.09002 * 109.47398 * 300.00410 * 15 14 12 37 37 H 1.09001 * 109.47194 * 60.00591 * 15 14 12 38 38 H 1.09003 * 109.89080 * 242.65955 * 17 16 15 39 39 H 1.08997 * 109.89286 * 3.84786 * 17 16 15 40 40 H 1.09003 * 110.70500 * 140.67082 * 18 17 16 41 41 H 1.09004 * 110.70214 * 263.90079 * 18 17 16 42 42 H 1.08997 * 110.99015 * 82.43462 * 19 18 17 43 43 H 1.08995 * 110.99005 * 206.25890 * 19 18 17 44 44 H 1.08003 * 120.41341 * 0.02562 * 23 22 20 45 45 H 1.07997 * 119.62227 * 180.29992 * 24 23 22 46 46 H 1.07990 * 119.62012 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.41975 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6733 8 14 3.4368 3.4174 -3.4340 9 1 2.1391 3.5945 -4.1337 10 1 4.1783 4.7040 -3.4341 11 1 4.2395 2.3828 -4.1343 12 6 2.1390 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 6 2.3797 -3.6352 0.0027 16 7 1.6451 -4.9074 0.0032 17 6 0.9713 -5.1290 -1.2893 18 6 1.4736 -6.4798 -1.8412 19 6 1.9696 -7.2147 -0.5681 20 6 2.5546 -6.0443 0.2610 21 1 3.5635 -5.8071 -0.0767 22 6 2.5587 -6.3908 1.7275 23 6 1.3855 -6.3665 2.4659 24 6 1.4271 -6.6952 3.8076 25 7 2.5663 -7.0188 4.3876 26 6 3.7021 -7.0471 3.7181 27 6 3.7369 -6.7359 2.3720 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5138 33 1 4.0295 4.4443 -0.8505 34 1 0.7584 -2.5306 -0.8881 35 1 0.7590 -2.5295 0.8918 36 1 3.0064 -3.5783 -0.8873 37 1 3.0063 -3.5767 0.8927 38 1 -0.1082 -5.1666 -1.1431 39 1 1.2261 -4.3274 -1.9826 40 1 0.6592 -7.0307 -2.3117 41 1 2.2938 -6.3283 -2.5430 42 1 1.1405 -7.6889 -0.0431 43 1 2.7420 -7.9434 -0.8140 44 1 0.4501 -6.0982 1.9974 45 1 0.5168 -6.6834 4.3886 46 1 4.6154 -7.3166 4.2274 47 1 4.6703 -6.7605 1.8290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092807980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:40 Heat of formation + Delta-G solvation = 3.531458 kcal Electronic energy + Delta-G solvation = -26398.691627 eV Core-core repulsion = 22774.217794 eV Total energy + Delta-G solvation = -3624.473833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58212 -39.31015 -38.56364 -34.85050 -33.66563 -32.92480 -32.54499 -31.29054 -29.59156 -28.56598 -27.57344 -25.76331 -24.22876 -23.67802 -23.17925 -22.19645 -21.02558 -20.28697 -18.28926 -17.19680 -16.95495 -16.53490 -16.12013 -15.76870 -15.64318 -15.24103 -15.11521 -14.90329 -14.32192 -14.05208 -13.85289 -13.65212 -13.62786 -13.33802 -12.95717 -12.59281 -12.22263 -12.18083 -11.93472 -11.84270 -11.72620 -11.62269 -11.53596 -11.41594 -11.14046 -11.03061 -10.92527 -10.75824 -10.55042 -10.16682 -9.65514 -9.64899 -9.55892 -9.23779 -8.89925 -8.54474 -8.44082 -7.63530 -6.04747 -4.09805 1.04147 1.13561 3.30372 3.34868 3.36424 3.46055 3.51359 3.73812 4.08167 4.28797 4.36256 4.41782 4.44827 4.65719 4.70978 4.75606 5.01339 5.03994 5.11995 5.14585 5.19701 5.23852 5.28260 5.36536 5.46436 5.51220 5.53655 5.58100 5.62392 5.69005 5.73781 5.83379 5.89878 5.90685 5.95527 6.04304 6.08681 6.22060 6.25811 6.59889 6.79645 6.91554 7.06545 7.44595 7.54494 7.86679 7.91467 8.23149 8.42977 8.89442 9.10202 9.55213 11.03323 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.002808 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.670496 B = 9969.053813 C =10570.895187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.132 4.132 15 C 0.069 3.931 16 N -0.524 5.524 17 C 0.039 3.961 18 C -0.142 4.142 19 C -0.117 4.117 20 C 0.107 3.893 21 H 0.070 0.930 22 C -0.024 4.024 23 C -0.139 4.139 24 C 0.090 3.910 25 N -0.490 5.490 26 C 0.094 3.906 27 C -0.170 4.170 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.140 0.860 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -23.334 2.457 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.172 4.172 15 C -0.059 4.059 16 N -0.248 5.248 17 C -0.089 4.089 18 C -0.180 4.180 19 C -0.155 4.155 20 C -0.001 4.001 21 H 0.088 0.912 22 C -0.033 4.033 23 C -0.159 4.159 24 C -0.066 4.066 25 N -0.200 5.200 26 C -0.063 4.063 27 C -0.190 4.190 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.158 0.842 45 H 0.170 0.830 46 H 0.170 0.830 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.987 -23.279 3.781 24.597 hybrid contribution 0.712 0.790 -2.542 2.755 sum -6.276 -22.489 1.239 23.381 Atomic orbital electron populations 1.21631 0.81434 1.02496 1.00423 1.48158 1.06190 1.07879 1.71294 1.19272 0.92557 0.78168 0.97427 1.21392 1.36614 1.06276 0.92287 0.92603 1.24940 0.95367 0.96391 0.97428 1.69922 1.38336 1.14336 1.30793 0.86558 0.78347 0.77833 0.84673 1.20252 1.21133 1.20214 1.20307 0.88069 0.85197 0.77437 1.90661 1.14022 1.87378 1.50379 1.21599 0.99139 0.92559 1.03937 1.21975 0.94591 0.86938 1.02367 1.63379 1.28638 1.01574 1.31246 1.22890 0.99800 0.96646 0.89542 1.22806 1.01336 0.96451 0.97441 1.22724 1.00899 0.96469 0.95401 1.21434 0.96451 0.91251 0.90945 0.91205 1.20099 0.93143 0.94799 0.95227 1.21992 0.99588 0.99436 0.94896 1.22782 0.96089 0.95129 0.92642 1.67638 0.98965 1.13526 1.39835 1.22667 0.96251 0.96023 0.91328 1.22046 0.98685 1.01942 0.96376 0.93742 0.90869 0.92435 0.95051 0.93894 0.92641 0.89666 0.88968 0.93525 0.90220 0.90202 0.92016 0.90481 0.91248 0.90345 0.90609 0.84195 0.82992 0.82998 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.95 16 2 N -0.60 -12.91 2.86 -182.95 -0.52 -13.44 16 3 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 4 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.50 10.46 7.67 -10.98 -0.08 10.38 16 13 O -0.55 -13.79 15.56 5.56 0.09 -13.70 16 14 C -0.13 -1.92 4.28 -27.88 -0.12 -2.04 16 15 C 0.07 0.96 3.83 -3.82 -0.01 0.95 16 16 N -0.52 -5.63 4.19 -224.75 -0.94 -6.57 16 17 C 0.04 0.36 6.20 -2.84 -0.02 0.34 16 18 C -0.14 -1.07 6.94 -24.91 -0.17 -1.24 16 19 C -0.12 -0.89 6.48 -24.59 -0.16 -1.05 16 20 C 0.11 1.04 2.62 -67.34 -0.18 0.87 16 21 H 0.07 0.72 7.73 -51.93 -0.40 0.32 16 22 C -0.02 -0.24 5.05 -104.32 -0.53 -0.77 16 23 C -0.14 -1.39 9.32 -39.44 -0.37 -1.76 16 24 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 25 N -0.49 -5.78 10.36 -13.26 -0.14 -5.92 16 26 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 27 C -0.17 -1.67 9.79 -39.44 -0.39 -2.06 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 1.10 6.40 -51.93 -0.33 0.77 16 35 H 0.09 1.22 8.11 -51.93 -0.42 0.79 16 36 H 0.05 0.71 7.92 -51.93 -0.41 0.30 16 37 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.62 6.91 -51.93 -0.36 0.27 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.59 7.95 -51.93 -0.41 0.18 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.14 1.27 7.83 -52.48 -0.41 0.86 16 45 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -34.32 383.80 -9.92 -44.24 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.65 Total: -0.99 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.25 Total: -0.21 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.87 Total: -52.04 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.32 -9.92 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092807980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.767 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds