Wall clock time and date at job start Tue Mar 31 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99896 * 2 1 4 4 C 1.50705 * 109.47066 * 269.99622 * 3 2 1 5 5 H 1.08001 * 119.99987 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00127 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00059 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00144 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46966 * 59.99914 * 8 6 4 10 10 H 1.48498 * 109.47378 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47029 * 300.00164 * 8 6 4 12 12 C 1.34779 * 120.00050 * 179.97438 * 2 1 3 13 13 O 1.21273 * 120.00093 * 180.02562 * 12 2 1 14 14 C 1.50706 * 119.99767 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46735 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.46769 * 180.02562 * 15 14 12 17 17 C 1.47439 * 110.99961 * 69.87863 * 16 15 14 18 18 C 1.54322 * 107.23490 * 123.25626 * 17 16 15 19 19 C 1.55135 * 103.02006 * 22.28319 * 18 17 16 20 20 C 1.47853 * 110.99956 * 190.71917 * 16 15 14 21 21 H 1.09002 * 110.36766 * 332.46788 * 20 16 15 22 22 C 1.50692 * 110.37266 * 94.80864 * 20 16 15 23 23 C 1.38649 * 120.79439 * 39.71844 * 22 20 16 24 24 C 1.38201 * 119.16683 * 179.75608 * 23 22 20 25 25 N 1.31869 * 120.75878 * 0.52930 * 24 23 22 26 26 C 1.31871 * 121.73287 * 359.74631 * 25 24 23 27 27 C 1.38202 * 120.75937 * 359.97298 * 26 25 24 28 28 H 1.09003 * 109.46862 * 270.00235 * 1 2 3 29 29 H 1.08996 * 109.47101 * 30.00360 * 1 2 3 30 30 H 1.09003 * 109.46885 * 149.99968 * 1 2 3 31 31 H 1.08998 * 109.47205 * 29.99486 * 3 2 1 32 32 H 1.08997 * 109.47416 * 150.00347 * 3 2 1 33 33 H 0.97001 * 120.00292 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46797 * 60.00350 * 14 12 2 35 35 H 1.08992 * 109.47518 * 300.00347 * 14 12 2 36 36 H 1.09002 * 109.47398 * 300.00410 * 15 14 12 37 37 H 1.09001 * 109.47194 * 60.00591 * 15 14 12 38 38 H 1.09003 * 109.89080 * 242.65955 * 17 16 15 39 39 H 1.08997 * 109.89286 * 3.84786 * 17 16 15 40 40 H 1.09003 * 110.70500 * 140.67082 * 18 17 16 41 41 H 1.09004 * 110.70214 * 263.90079 * 18 17 16 42 42 H 1.08997 * 110.99015 * 82.43462 * 19 18 17 43 43 H 1.08995 * 110.99005 * 206.25890 * 19 18 17 44 44 H 1.08003 * 120.41341 * 0.02562 * 23 22 20 45 45 H 1.07997 * 119.62227 * 180.29992 * 24 23 22 46 46 H 1.07990 * 119.62012 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.41975 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6733 8 14 3.4368 3.4174 -3.4340 9 1 2.1391 3.5945 -4.1337 10 1 4.1783 4.7040 -3.4341 11 1 4.2395 2.3828 -4.1343 12 6 2.1390 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 6 2.3797 -3.6352 0.0027 16 7 1.6451 -4.9074 0.0032 17 6 0.9713 -5.1290 -1.2893 18 6 1.4736 -6.4798 -1.8412 19 6 1.9696 -7.2147 -0.5681 20 6 2.5546 -6.0443 0.2610 21 1 3.5635 -5.8071 -0.0767 22 6 2.5587 -6.3908 1.7275 23 6 1.3855 -6.3665 2.4659 24 6 1.4271 -6.6952 3.8076 25 7 2.5663 -7.0188 4.3876 26 6 3.7021 -7.0471 3.7181 27 6 3.7369 -6.7359 2.3720 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5138 33 1 4.0295 4.4443 -0.8505 34 1 0.7584 -2.5306 -0.8881 35 1 0.7590 -2.5295 0.8918 36 1 3.0064 -3.5783 -0.8873 37 1 3.0063 -3.5767 0.8927 38 1 -0.1082 -5.1666 -1.1431 39 1 1.2261 -4.3274 -1.9826 40 1 0.6592 -7.0307 -2.3117 41 1 2.2938 -6.3283 -2.5430 42 1 1.1405 -7.6889 -0.0431 43 1 2.7420 -7.9434 -0.8140 44 1 0.4501 -6.0982 1.9974 45 1 0.5168 -6.6834 4.3886 46 1 4.6154 -7.3166 4.2274 47 1 4.6703 -6.7605 1.8290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092807980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:39 Heat of formation + Delta-G solvation = -18.638595 kcal Electronic energy + Delta-G solvation = -26399.652993 eV Core-core repulsion = 22774.217794 eV Total energy + Delta-G solvation = -3625.435199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38275 -40.69458 -39.61200 -36.63531 -34.88265 -34.50197 -33.67911 -32.03570 -30.88597 -29.41344 -29.17498 -27.29520 -25.63032 -24.53149 -24.25008 -23.45613 -21.84306 -21.12968 -19.85514 -18.72153 -18.12889 -17.95246 -17.23153 -17.02884 -16.82585 -16.41868 -16.22589 -16.13972 -15.88988 -14.92347 -14.87953 -14.61910 -14.47936 -14.32864 -14.11899 -14.09704 -13.75562 -13.48882 -13.38864 -13.20571 -12.86667 -12.79596 -12.64205 -12.55200 -12.39602 -12.33543 -12.20897 -12.08217 -11.93679 -11.73231 -11.57484 -10.66356 -10.63938 -10.42726 -10.33123 -9.99038 -9.44957 -9.41268 -8.24122 -6.39748 0.28776 0.36145 1.34986 1.39407 1.46916 1.82940 2.26013 2.40365 2.83491 3.00856 3.05228 3.53995 3.67278 3.72398 3.79210 3.93329 3.96333 4.09334 4.09754 4.18314 4.30551 4.32584 4.39578 4.41755 4.58707 4.63642 4.71285 4.75740 4.80334 4.89226 4.91441 4.95304 4.96562 4.99641 5.02095 5.03854 5.09571 5.18001 5.21419 5.33779 5.46304 5.54079 5.82563 5.86154 5.97283 5.99113 6.03982 6.67447 6.77988 7.10133 7.26160 7.47065 8.82910 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.002808 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.670496 B = 9969.053813 C =10570.895187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.111 4.111 15 C 0.081 3.919 16 N -0.517 5.517 17 C 0.034 3.966 18 C -0.137 4.137 19 C -0.109 4.109 20 C 0.105 3.895 21 H 0.059 0.941 22 C -0.033 4.033 23 C -0.141 4.141 24 C 0.081 3.919 25 N -0.517 5.517 26 C 0.083 3.917 27 C -0.178 4.178 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.022 0.978 32 H -0.005 1.005 33 H 0.268 0.732 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.025 0.975 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.152 0.848 45 H 0.173 0.827 46 H 0.170 0.830 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 -24.894 0.986 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.151 4.151 15 C -0.048 4.048 16 N -0.241 5.241 17 C -0.093 4.093 18 C -0.175 4.175 19 C -0.147 4.147 20 C -0.003 4.003 21 H 0.077 0.923 22 C -0.042 4.042 23 C -0.161 4.161 24 C -0.075 4.075 25 N -0.227 5.227 26 C -0.073 4.073 27 C -0.198 4.198 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.040 0.960 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.169 0.831 45 H 0.190 0.810 46 H 0.188 0.812 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.227 -24.863 2.313 26.621 hybrid contribution 1.395 1.255 -2.024 2.760 sum -7.832 -23.609 0.289 24.875 Atomic orbital electron populations 1.21940 0.77710 1.04081 1.02580 1.48207 1.08522 1.06377 1.71135 1.18737 0.90996 0.80529 0.96050 1.21679 1.36997 1.06611 0.92989 0.92759 1.25904 0.94852 0.96403 1.02156 1.70050 1.38876 1.14795 1.33221 0.85444 0.78921 0.77355 0.78960 1.18276 1.20323 1.20278 1.21424 0.87798 0.86812 0.75787 1.90629 1.16844 1.88303 1.52741 1.21505 0.98716 0.88636 1.06236 1.21723 0.94213 0.88639 1.00239 1.63396 1.28010 1.00339 1.32399 1.23021 1.00577 0.97278 0.88469 1.22793 1.01837 0.95643 0.97228 1.22706 1.01282 0.95742 0.94963 1.21487 0.95970 0.91768 0.91124 0.92316 1.20267 0.93509 0.94878 0.95552 1.22112 0.99882 0.99247 0.94811 1.23166 0.96481 0.94742 0.93144 1.67660 0.99778 1.14560 1.40704 1.23023 0.96691 0.95891 0.91714 1.22255 0.99323 1.01792 0.96461 0.91241 0.91629 0.88513 0.95962 0.98731 0.92358 0.86927 0.86483 0.95646 0.92678 0.88362 0.92979 0.88469 0.91691 0.89687 0.89564 0.83077 0.81012 0.81242 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.24 127.77 1.31 3.63 16 2 N -0.61 -26.24 2.86 -851.12 -2.43 -28.67 16 3 C 0.26 14.27 5.16 85.64 0.44 14.72 16 4 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.34 5.46 84.65 0.46 0.80 16 7 N -0.93 -57.09 13.29 21.44 0.28 -56.80 16 8 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 9 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 C 0.49 20.64 7.67 87.66 0.67 21.31 16 13 O -0.60 -31.89 15.56 -3.01 -0.05 -31.94 16 14 C -0.11 -3.04 4.28 29.85 0.13 -2.91 16 15 C 0.08 2.21 3.83 86.30 0.33 2.54 16 16 N -0.52 -10.17 4.19 -864.96 -3.62 -13.79 16 17 C 0.03 0.52 6.20 86.65 0.54 1.06 16 18 C -0.14 -1.67 6.94 31.77 0.22 -1.45 16 19 C -0.11 -1.39 6.48 31.98 0.21 -1.19 16 20 C 0.10 1.90 2.62 44.64 0.12 2.02 16 21 H 0.06 1.20 7.73 -2.39 -0.02 1.19 16 22 C -0.03 -0.65 5.05 -19.67 -0.10 -0.75 16 23 C -0.14 -2.59 9.32 22.36 0.21 -2.38 16 24 C 0.08 1.57 11.18 84.68 0.95 2.52 16 25 N -0.52 -11.89 10.36 -195.86 -2.03 -13.92 16 26 C 0.08 1.67 11.18 84.68 0.95 2.62 16 27 C -0.18 -3.41 9.79 22.36 0.22 -3.19 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 30 H 0.10 2.09 6.44 -2.39 -0.02 2.07 16 31 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 32 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.11 2.52 6.40 -2.39 -0.02 2.50 16 35 H 0.12 2.70 8.11 -2.39 -0.02 2.68 16 36 H 0.03 0.79 7.92 -2.39 -0.02 0.78 16 37 H 0.05 1.78 8.03 -2.39 -0.02 1.76 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 0.93 6.91 -2.39 -0.02 0.91 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.01 7.95 -2.39 -0.02 1.00 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.15 2.37 7.83 -2.91 -0.02 2.35 16 45 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.17 2.56 8.06 -2.92 -0.02 2.54 16 47 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -78.20 383.80 2.01 -76.19 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.94 Total: 14.04 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 6.89 Total: 7.79 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -7.80 Total: -113.19 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.05 Total: -31.94 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.20 2.01 -76.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092807980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.550 kcal (2) G-P(sol) polarization free energy of solvation -78.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds