Wall clock time and date at job start Tue Mar 31 2020 11:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00006 * 2 1 4 4 C 1.50694 * 109.47439 * 269.99877 * 3 2 1 5 5 H 1.08000 * 119.99759 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00279 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99922 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99840 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47085 * 90.00412 * 8 6 4 10 10 H 1.48497 * 109.46800 * 210.00277 * 8 6 4 11 11 H 1.48501 * 109.47216 * 330.00209 * 8 6 4 12 12 C 1.39672 * 120.00005 * 179.97438 * 2 1 3 13 13 C 1.38908 * 120.07325 * 179.72643 * 12 2 1 14 14 C 1.38113 * 119.92511 * 179.76959 * 13 12 2 15 15 C 1.38290 * 120.06963 * 0.50806 * 14 13 12 16 16 C 1.50702 * 119.92137 * 179.72101 * 15 14 13 17 17 N 1.46898 * 109.47389 * 270.02114 * 16 15 14 18 18 C 1.45558 * 111.00174 * 206.14015 * 17 16 15 19 19 C 1.53018 * 110.85968 * 300.53522 * 18 17 16 20 20 N 1.47257 * 108.58278 * 274.27716 * 19 18 17 21 21 C 1.33632 * 120.10478 * 70.66283 * 20 19 18 22 22 O 1.21281 * 120.05192 * 179.78250 * 21 20 19 23 23 C 1.51490 * 119.89713 * 359.76691 * 21 20 19 24 24 C 1.45588 * 110.99836 * 75.55403 * 17 16 15 25 25 C 1.38284 * 120.15338 * 359.74357 * 15 14 13 26 26 C 1.38111 * 120.07226 * 0.02562 * 25 15 14 27 27 H 1.09002 * 109.46922 * 90.00319 * 1 2 3 28 28 H 1.08999 * 109.47381 * 209.99832 * 1 2 3 29 29 H 1.09001 * 109.47746 * 329.99965 * 1 2 3 30 30 H 1.09003 * 109.47195 * 30.00099 * 3 2 1 31 31 H 1.09000 * 109.47292 * 149.99254 * 3 2 1 32 32 H 0.96997 * 120.00201 * 180.02562 * 7 6 4 33 33 H 1.07995 * 120.04042 * 0.02562 * 13 12 2 34 34 H 1.07992 * 119.96624 * 180.25391 * 14 13 12 35 35 H 1.09003 * 109.47204 * 30.02380 * 16 15 14 36 36 H 1.09003 * 109.46614 * 150.02126 * 16 15 14 37 37 H 1.09002 * 109.19555 * 60.89193 * 18 17 16 38 38 H 1.08999 * 109.20141 * 180.18009 * 18 17 16 39 39 H 1.08994 * 109.61009 * 154.55120 * 19 18 17 40 40 H 1.09004 * 109.76483 * 34.09480 * 19 18 17 41 41 H 0.97000 * 119.94824 * 250.69010 * 20 19 18 42 42 H 1.09004 * 109.68312 * 170.27499 * 23 21 20 43 43 H 1.09000 * 109.68515 * 49.71184 * 23 21 20 44 44 H 1.09001 * 109.23422 * 180.02562 * 24 17 16 45 45 H 1.08996 * 109.23603 * 299.38771 * 24 17 16 46 46 H 1.07992 * 119.96231 * 179.97438 * 25 15 14 47 47 H 1.07995 * 120.03447 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0974 1.0962 -2.2416 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4380 3.4169 -3.4339 9 1 2.3079 4.2591 -3.9014 10 1 4.6980 4.2003 -3.4960 11 1 3.5562 2.2195 -4.3043 12 6 2.1633 -1.2096 0.0005 13 6 3.5524 -1.2114 -0.0052 14 6 4.2399 -2.4092 0.0002 15 6 3.5468 -3.6059 0.0006 16 6 4.3004 -4.9110 0.0001 17 7 4.5448 -5.3349 -1.3850 18 6 4.6883 -6.7808 -1.4704 19 6 5.8534 -7.2648 -0.6046 20 7 7.0949 -7.1654 -1.3902 21 6 7.6113 -5.9672 -1.6790 22 8 8.6359 -5.8866 -2.3228 23 6 6.9145 -4.7097 -1.2013 24 6 5.6116 -4.5504 -1.9901 25 6 2.1640 -3.6078 0.0011 26 6 1.4703 -2.4135 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0284 0.5139 31 1 3.1498 1.1384 0.5139 32 1 4.0295 4.4444 -0.8503 33 1 4.0942 -0.2772 -0.0097 34 1 5.3198 -2.4114 -0.0001 35 1 5.2530 -4.7808 0.5137 36 1 3.7114 -5.6707 0.5141 37 1 3.7673 -7.2532 -1.1288 38 1 4.8713 -7.0622 -2.5074 39 1 5.6866 -8.3018 -0.3133 40 1 5.9336 -6.6426 0.2868 41 1 7.5384 -7.9710 -1.6990 42 1 7.5565 -3.8459 -1.3745 43 1 6.6917 -4.7949 -0.1377 44 1 5.7683 -4.8875 -3.0147 45 1 5.3235 -3.4992 -1.9990 46 1 1.6259 -4.5441 0.0010 47 1 0.3904 -2.4156 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:13 Heat of formation + Delta-G solvation = 11.815248 kcal Electronic energy + Delta-G solvation = -26713.901229 eV Core-core repulsion = 23089.786607 eV Total energy + Delta-G solvation = -3624.114621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75120 -39.06445 -37.85597 -35.77705 -34.64189 -32.72023 -31.80888 -30.48397 -30.41249 -27.86303 -27.73649 -26.30856 -24.68472 -24.36869 -22.58288 -21.55849 -20.76047 -20.02974 -19.45183 -17.61251 -17.04523 -16.61305 -16.46157 -15.90229 -15.65554 -15.38223 -15.02612 -14.58791 -14.22849 -14.05583 -13.75341 -13.67185 -13.20620 -13.06301 -12.90986 -12.83063 -12.68230 -12.14697 -12.07271 -11.90698 -11.61017 -11.53589 -11.48281 -11.39494 -11.24941 -10.92291 -10.76762 -10.69214 -10.26409 -9.96756 -9.90795 -9.74937 -9.64834 -8.84229 -8.51045 -8.29591 -8.19136 -6.47535 -6.02473 -4.17785 2.09309 2.19588 2.42959 3.00858 3.26569 3.33723 3.38418 3.76868 4.14274 4.25779 4.41143 4.52705 4.60280 4.70064 4.77111 4.87582 5.00059 5.06937 5.21136 5.24872 5.31571 5.35850 5.52929 5.56240 5.60679 5.67085 5.77706 5.82830 5.96332 5.99303 6.10820 6.28714 6.35747 6.40713 6.50359 6.62399 6.86542 6.90059 6.98048 7.02614 7.13496 7.19568 7.25953 7.34810 7.58814 7.80726 7.99342 8.14992 8.25452 8.47377 8.91299 9.49234 10.95120 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.003287 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.808788 B = 8516.905553 C = 9917.711625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.616 5.616 3 C 0.249 3.751 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.242 3.758 13 C -0.187 4.187 14 C -0.067 4.067 15 C -0.167 4.167 16 C 0.106 3.894 17 N -0.548 5.548 18 C 0.047 3.953 19 C 0.067 3.933 20 N -0.728 5.728 21 C 0.519 3.481 22 O -0.551 6.551 23 C -0.185 4.185 24 C 0.074 3.926 25 C -0.053 4.053 26 C -0.222 4.222 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.399 0.601 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -21.173 3.615 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.321 5.321 3 C 0.130 3.870 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.135 3.865 13 C -0.209 4.209 14 C -0.087 4.087 15 C -0.170 4.170 16 C -0.020 4.020 17 N -0.269 5.269 18 C -0.082 4.082 19 C -0.060 4.060 20 N -0.381 5.381 21 C 0.306 3.694 22 O -0.429 6.429 23 C -0.227 4.227 24 C -0.055 4.055 25 C -0.072 4.072 26 C -0.245 4.245 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.234 0.766 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.057 -20.447 3.124 20.684 hybrid contribution 0.968 -0.033 -0.691 1.190 sum 1.026 -20.480 2.433 20.650 Atomic orbital electron populations 1.21457 0.81505 1.00975 1.00449 1.47098 1.04391 1.04676 1.75973 1.19293 0.92055 0.78698 0.96993 1.21574 1.36324 1.06404 0.92678 0.92257 1.24954 0.95397 0.96294 0.97384 1.69923 1.38426 1.14331 1.30767 0.86534 0.77703 0.78741 0.84746 1.20640 1.21072 1.19740 1.17944 0.91489 0.85953 0.91134 1.20858 0.92707 0.98718 1.08653 1.20646 0.98361 0.91710 0.97965 1.19093 0.93484 0.93181 1.11205 1.20920 0.98019 0.95324 0.87720 1.59923 1.43681 1.03732 1.19597 1.22394 0.97277 0.87921 1.00656 1.22654 0.84774 1.03292 0.95231 1.46030 1.27473 1.08382 1.56258 1.20765 0.84077 0.85728 0.78809 1.90750 1.24650 1.87241 1.40263 1.22831 1.00358 0.96443 1.03046 1.21788 0.85838 1.00595 0.97247 1.20443 0.93168 0.96414 0.97167 1.20561 0.98998 0.91443 1.13546 0.94095 0.92809 0.92090 0.95263 0.94664 0.92646 0.85146 0.87494 0.93819 0.90739 0.89248 0.90255 0.89160 0.90318 0.76553 0.87710 0.88567 0.90766 0.88230 0.87467 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.23 59.85 0.61 2.33 16 2 N -0.62 -12.89 2.99 -181.01 -0.54 -13.43 16 3 C 0.25 6.16 4.95 -5.20 -0.03 6.13 16 4 C -0.53 -14.39 9.39 -34.44 -0.32 -14.71 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.24 4.71 6.55 -83.79 -0.55 4.16 16 13 C -0.19 -3.60 9.20 -39.38 -0.36 -3.96 16 14 C -0.07 -1.05 8.29 -39.61 -0.33 -1.38 16 15 C -0.17 -2.28 5.12 -104.59 -0.54 -2.82 16 16 C 0.11 1.06 3.99 -4.98 -0.02 1.04 16 17 N -0.55 -5.45 4.45 -238.19 -1.06 -6.51 16 18 C 0.05 0.33 5.54 -4.54 -0.03 0.31 16 19 C 0.07 0.39 6.37 -3.62 -0.02 0.37 16 20 N -0.73 -5.98 5.31 -59.75 -0.32 -6.29 16 21 C 0.52 6.10 7.10 -11.11 -0.08 6.02 16 22 O -0.55 -8.89 17.93 5.56 0.10 -8.79 16 23 C -0.18 -1.93 5.49 -27.42 -0.15 -2.08 16 24 C 0.07 0.81 5.40 -4.46 -0.02 0.79 16 25 C -0.05 -0.75 9.69 -39.61 -0.38 -1.14 16 26 C -0.22 -3.67 9.21 -39.38 -0.36 -4.04 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.77 6.20 -51.93 -0.32 0.45 16 29 H 0.06 1.00 7.89 -51.93 -0.41 0.59 16 30 H 0.03 0.76 7.89 -51.93 -0.41 0.35 16 31 H 0.04 0.92 6.21 -51.93 -0.32 0.59 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.13 2.82 6.15 -52.49 -0.32 2.50 16 34 H 0.11 1.47 7.92 -52.49 -0.42 1.06 16 35 H 0.04 0.41 4.80 -51.93 -0.25 0.16 16 36 H 0.07 0.62 7.72 -51.93 -0.40 0.22 16 37 H 0.09 0.51 8.05 -51.93 -0.42 0.10 16 38 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.48 5.43 -51.93 -0.28 0.20 16 41 H 0.40 2.82 8.92 -40.82 -0.36 2.46 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.10 0.88 4.68 -51.93 -0.24 0.64 16 44 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 45 H 0.10 1.27 6.40 -51.93 -0.33 0.94 16 46 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 47 H 0.11 1.68 6.14 -52.49 -0.32 1.36 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -31.77 365.76 -10.15 -41.91 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.88 Total: 3.46 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.68 Total: -7.37 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -1.18 Total: -51.00 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.10 Total: -8.79 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.77 -10.15 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.729 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds