Wall clock time and date at job start Tue Mar 31 2020 11:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00006 * 2 1 4 4 C 1.50694 * 109.47439 * 269.99877 * 3 2 1 5 5 H 1.08000 * 119.99759 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00279 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99922 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99840 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47085 * 90.00412 * 8 6 4 10 10 H 1.48497 * 109.46800 * 210.00277 * 8 6 4 11 11 H 1.48501 * 109.47216 * 330.00209 * 8 6 4 12 12 C 1.39672 * 120.00005 * 179.97438 * 2 1 3 13 13 C 1.38908 * 120.07325 * 179.72643 * 12 2 1 14 14 C 1.38113 * 119.92511 * 179.76959 * 13 12 2 15 15 C 1.38290 * 120.06963 * 0.50806 * 14 13 12 16 16 C 1.50702 * 119.92137 * 179.72101 * 15 14 13 17 17 N 1.46898 * 109.47389 * 270.02114 * 16 15 14 18 18 C 1.45558 * 111.00174 * 206.14015 * 17 16 15 19 19 C 1.53018 * 110.85968 * 300.53522 * 18 17 16 20 20 N 1.47257 * 108.58278 * 274.27716 * 19 18 17 21 21 C 1.33632 * 120.10478 * 70.66283 * 20 19 18 22 22 O 1.21281 * 120.05192 * 179.78250 * 21 20 19 23 23 C 1.51490 * 119.89713 * 359.76691 * 21 20 19 24 24 C 1.45588 * 110.99836 * 75.55403 * 17 16 15 25 25 C 1.38284 * 120.15338 * 359.74357 * 15 14 13 26 26 C 1.38111 * 120.07226 * 0.02562 * 25 15 14 27 27 H 1.09002 * 109.46922 * 90.00319 * 1 2 3 28 28 H 1.08999 * 109.47381 * 209.99832 * 1 2 3 29 29 H 1.09001 * 109.47746 * 329.99965 * 1 2 3 30 30 H 1.09003 * 109.47195 * 30.00099 * 3 2 1 31 31 H 1.09000 * 109.47292 * 149.99254 * 3 2 1 32 32 H 0.96997 * 120.00201 * 180.02562 * 7 6 4 33 33 H 1.07995 * 120.04042 * 0.02562 * 13 12 2 34 34 H 1.07992 * 119.96624 * 180.25391 * 14 13 12 35 35 H 1.09003 * 109.47204 * 30.02380 * 16 15 14 36 36 H 1.09003 * 109.46614 * 150.02126 * 16 15 14 37 37 H 1.09002 * 109.19555 * 60.89193 * 18 17 16 38 38 H 1.08999 * 109.20141 * 180.18009 * 18 17 16 39 39 H 1.08994 * 109.61009 * 154.55120 * 19 18 17 40 40 H 1.09004 * 109.76483 * 34.09480 * 19 18 17 41 41 H 0.97000 * 119.94824 * 250.69010 * 20 19 18 42 42 H 1.09004 * 109.68312 * 170.27499 * 23 21 20 43 43 H 1.09000 * 109.68515 * 49.71184 * 23 21 20 44 44 H 1.09001 * 109.23422 * 180.02562 * 24 17 16 45 45 H 1.08996 * 109.23603 * 299.38771 * 24 17 16 46 46 H 1.07992 * 119.96231 * 179.97438 * 25 15 14 47 47 H 1.07995 * 120.03447 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0974 1.0962 -2.2416 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4380 3.4169 -3.4339 9 1 2.3079 4.2591 -3.9014 10 1 4.6980 4.2003 -3.4960 11 1 3.5562 2.2195 -4.3043 12 6 2.1633 -1.2096 0.0005 13 6 3.5524 -1.2114 -0.0052 14 6 4.2399 -2.4092 0.0002 15 6 3.5468 -3.6059 0.0006 16 6 4.3004 -4.9110 0.0001 17 7 4.5448 -5.3349 -1.3850 18 6 4.6883 -6.7808 -1.4704 19 6 5.8534 -7.2648 -0.6046 20 7 7.0949 -7.1654 -1.3902 21 6 7.6113 -5.9672 -1.6790 22 8 8.6359 -5.8866 -2.3228 23 6 6.9145 -4.7097 -1.2013 24 6 5.6116 -4.5504 -1.9901 25 6 2.1640 -3.6078 0.0011 26 6 1.4703 -2.4135 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6084 2.0284 0.5139 31 1 3.1498 1.1384 0.5139 32 1 4.0295 4.4444 -0.8503 33 1 4.0942 -0.2772 -0.0097 34 1 5.3198 -2.4114 -0.0001 35 1 5.2530 -4.7808 0.5137 36 1 3.7114 -5.6707 0.5141 37 1 3.7673 -7.2532 -1.1288 38 1 4.8713 -7.0622 -2.5074 39 1 5.6866 -8.3018 -0.3133 40 1 5.9336 -6.6426 0.2868 41 1 7.5384 -7.9710 -1.6990 42 1 7.5565 -3.8459 -1.3745 43 1 6.6917 -4.7949 -0.1377 44 1 5.7683 -4.8875 -3.0147 45 1 5.3235 -3.4992 -1.9990 46 1 1.6259 -4.5441 0.0010 47 1 0.3904 -2.4156 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093101803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:12 Heat of formation + Delta-G solvation = -10.092404 kcal Electronic energy + Delta-G solvation = -26714.851216 eV Core-core repulsion = 23089.786607 eV Total energy + Delta-G solvation = -3625.064608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.58385 -40.32650 -38.86494 -37.12423 -35.54750 -34.70793 -32.66531 -31.77652 -31.61678 -29.61118 -28.59938 -27.39694 -26.08240 -25.35759 -24.05806 -22.90624 -21.71497 -20.95917 -20.54805 -18.63908 -18.41300 -18.10955 -17.69472 -16.98648 -16.53138 -16.46951 -16.25766 -16.01508 -15.56750 -15.28026 -14.89950 -14.84680 -14.45984 -14.25947 -14.11575 -13.98093 -13.64426 -13.50880 -13.21704 -13.15105 -13.02801 -12.70286 -12.66243 -12.52748 -12.47102 -12.38663 -12.15369 -12.10543 -11.83500 -11.72630 -11.32294 -10.91725 -10.63674 -10.44025 -10.32400 -9.57114 -8.95794 -8.35007 -7.75238 -6.36835 0.79202 0.93087 1.35880 1.37530 1.48280 1.53014 2.32488 2.34469 2.67895 2.91858 3.06329 3.37434 3.47365 3.93918 3.99381 4.06454 4.12224 4.20860 4.30595 4.34875 4.40331 4.47994 4.50566 4.54016 4.64651 4.69339 4.78933 4.88459 4.91402 4.95688 5.00869 5.03734 5.10453 5.16158 5.20342 5.21736 5.40415 5.62785 5.75094 5.76103 5.84344 5.96979 6.08693 6.11431 6.21659 6.31702 6.43411 6.53513 6.85098 6.99673 7.17500 7.35221 8.83259 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.003287 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.808788 B = 8516.905553 C = 9917.711625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.634 5.634 3 C 0.268 3.732 4 C -0.540 4.540 5 H 0.047 0.953 6 C 0.014 3.986 7 N -0.926 5.926 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.273 1.273 12 C 0.209 3.791 13 C -0.219 4.219 14 C -0.068 4.068 15 C -0.149 4.149 16 C 0.109 3.891 17 N -0.557 5.557 18 C 0.047 3.953 19 C 0.067 3.933 20 N -0.715 5.715 21 C 0.516 3.484 22 O -0.605 6.605 23 C -0.178 4.178 24 C 0.081 3.919 25 C -0.048 4.048 26 C -0.220 4.220 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.008 0.992 31 H 0.011 0.989 32 H 0.267 0.733 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.084 0.916 41 H 0.406 0.594 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.147 0.853 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 -24.969 3.810 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.342 5.342 3 C 0.146 3.854 4 C -0.579 4.579 5 H 0.065 0.935 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.198 1.198 12 C 0.105 3.895 13 C -0.242 4.242 14 C -0.087 4.087 15 C -0.152 4.152 16 C -0.017 4.017 17 N -0.279 5.279 18 C -0.082 4.082 19 C -0.058 4.058 20 N -0.366 5.366 21 C 0.303 3.697 22 O -0.487 6.487 23 C -0.220 4.220 24 C -0.048 4.048 25 C -0.067 4.067 26 C -0.242 4.242 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.102 0.898 41 H 0.242 0.758 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.164 0.836 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.098 -24.319 3.341 24.572 hybrid contribution 1.318 0.963 -0.714 1.782 sum 0.220 -23.356 2.627 23.505 Atomic orbital electron populations 1.21571 0.79518 1.02521 1.00640 1.46939 1.05566 1.03815 1.77914 1.18754 0.91077 0.80338 0.95236 1.21780 1.36260 1.06424 0.93464 0.93475 1.25746 0.95122 0.96365 1.01319 1.70026 1.39098 1.14763 1.32715 0.85548 0.77949 0.78248 0.79912 1.19547 1.20416 1.19795 1.18238 0.91642 0.86462 0.93171 1.20754 0.93228 0.98560 1.11648 1.20824 0.99101 0.91425 0.97367 1.19545 0.93814 0.94091 1.07788 1.20976 0.98594 0.93972 0.88183 1.59827 1.43199 1.05460 1.19399 1.22501 0.99046 0.85833 1.00775 1.22871 0.82736 1.05734 0.94461 1.46039 1.27865 1.07496 1.55188 1.20952 0.83474 0.86994 0.78256 1.90726 1.27081 1.88074 1.42867 1.22750 0.99656 0.95662 1.03883 1.21583 0.86499 0.99615 0.97115 1.20902 0.93465 0.97022 0.95263 1.20829 0.99985 0.90893 1.12532 0.94488 0.89606 0.92203 0.97364 0.97152 0.92410 0.89233 0.86296 0.92772 0.87363 0.86515 0.90992 0.85447 0.89825 0.75753 0.89016 0.86804 0.91742 0.90444 0.83570 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.47 10.23 127.77 1.31 4.78 16 2 N -0.63 -27.63 2.99 -726.58 -2.17 -29.80 16 3 C 0.27 14.12 4.95 85.63 0.42 14.55 16 4 C -0.54 -30.73 9.39 25.60 0.24 -30.48 16 5 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 6 C 0.01 0.78 5.46 84.66 0.46 1.24 16 7 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 8 Si 0.96 44.74 29.54 68.60 2.03 46.76 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 C 0.21 8.32 6.55 38.21 0.25 8.57 16 13 C -0.22 -8.90 9.20 22.40 0.21 -8.69 16 14 C -0.07 -2.12 8.29 22.25 0.18 -1.93 16 15 C -0.15 -3.65 5.12 -19.84 -0.10 -3.75 16 16 C 0.11 1.67 3.99 85.56 0.34 2.01 16 17 N -0.56 -9.07 4.45 -907.51 -4.04 -13.11 16 18 C 0.05 0.45 5.54 86.56 0.48 0.92 16 19 C 0.07 0.45 6.37 86.24 0.55 1.00 16 20 N -0.71 -9.71 5.31 -461.99 -2.45 -12.16 16 21 C 0.52 11.53 7.10 88.09 0.63 12.16 16 22 O -0.61 -19.70 17.93 -3.03 -0.05 -19.75 16 23 C -0.18 -3.50 5.49 30.15 0.17 -3.34 16 24 C 0.08 1.68 5.40 86.60 0.47 2.15 16 25 C -0.05 -1.18 9.69 22.25 0.22 -0.96 16 26 C -0.22 -6.82 9.21 22.40 0.21 -6.62 16 27 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 2.35 6.20 -2.39 -0.01 2.33 16 29 H 0.06 2.02 7.89 -2.39 -0.02 2.00 16 30 H 0.01 0.46 7.89 -2.39 -0.02 0.45 16 31 H 0.01 0.60 6.21 -2.39 -0.01 0.58 16 32 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 33 H 0.09 4.29 6.15 -2.91 -0.02 4.28 16 34 H 0.12 3.29 7.92 -2.91 -0.02 3.27 16 35 H 0.05 0.76 4.80 -2.39 -0.01 0.75 16 36 H 0.11 1.06 7.72 -2.39 -0.02 1.04 16 37 H 0.12 0.59 8.05 -2.39 -0.02 0.57 16 38 H 0.07 0.86 8.05 -2.39 -0.02 0.84 16 39 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.08 0.57 5.43 -2.39 -0.01 0.56 16 41 H 0.41 4.66 8.92 -92.71 -0.83 3.84 16 42 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.11 1.79 4.68 -2.39 -0.01 1.78 16 44 H 0.06 1.46 7.87 -2.39 -0.02 1.44 16 45 H 0.08 1.96 6.40 -2.39 -0.02 1.95 16 46 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 47 H 0.13 3.50 6.14 -2.91 -0.02 3.48 16 Total: -1.00 -74.24 365.76 -0.22 -74.47 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.17 Total: 16.48 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 6.02 Total: -8.41 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -8.39 Total: -109.55 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -74.24 -0.22 -74.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.373 kcal (2) G-P(sol) polarization free energy of solvation -74.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds